Wall clock time and date at job start Tue Mar 31 2020 18:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.70806 * 2 1 4 4 C 1.53165 * 109.58818 * 239.63730 * 2 1 3 5 5 C 1.53036 * 109.33071 * 185.57258 * 4 2 1 6 6 H 1.08996 * 109.46405 * 181.38834 * 5 4 2 7 7 N 1.46503 * 109.46076 * 301.35708 * 5 4 2 8 8 C 1.36932 * 120.00382 * 205.02650 * 7 5 4 9 9 H 1.07999 * 119.99915 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00108 * 180.02562 * 8 7 5 11 11 N 1.31623 * 120.00111 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00111 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.47280 * 90.00312 * 12 10 8 14 14 H 1.48495 * 109.47324 * 330.00767 * 12 10 8 15 15 H 1.48497 * 109.47510 * 210.00113 * 12 10 8 16 16 C 1.53039 * 109.52570 * 61.37039 * 5 4 2 17 17 C 1.53184 * 109.31597 * 298.64184 * 16 5 4 18 18 N 1.46925 * 108.77291 * 54.63509 * 17 16 5 19 19 C 1.34778 * 120.63207 * 126.40989 * 18 17 16 20 20 O 1.21733 * 120.00093 * 175.38582 * 19 18 17 21 21 C 1.46412 * 119.99896 * 355.39509 * 19 18 17 22 22 C 1.35781 * 124.95983 * 222.67160 * 21 19 18 23 23 C 1.38867 * 115.18474 * 180.02562 * 22 21 19 24 24 N 1.39745 * 139.91467 * 180.02562 * 23 22 21 25 25 H 0.97004 * 125.62861 * 359.97438 * 24 23 22 26 26 C 1.36213 * 108.73670 * 179.97438 * 24 23 22 27 27 C 1.34507 * 109.29741 * 0.02562 * 26 24 23 28 28 C 1.38245 * 113.39392 * 359.97438 * 23 22 21 29 29 S 1.75621 * 124.95841 * 42.36950 * 21 19 18 30 30 H 1.09000 * 109.46801 * 305.71745 * 1 2 3 31 31 H 1.08997 * 109.47164 * 65.71135 * 1 2 3 32 32 H 1.08994 * 109.47171 * 185.71531 * 1 2 3 33 33 H 1.09004 * 109.48072 * 65.62070 * 4 2 1 34 34 H 1.09006 * 109.50137 * 305.53821 * 4 2 1 35 35 H 0.97009 * 119.99525 * 25.02867 * 7 5 4 36 36 H 0.97007 * 119.99943 * 180.02562 * 11 10 8 37 37 H 1.08998 * 109.49617 * 58.60054 * 16 5 4 38 38 H 1.09004 * 109.49340 * 178.69087 * 16 5 4 39 39 H 1.08994 * 109.59092 * 174.42013 * 17 16 5 40 40 H 1.08997 * 109.58808 * 294.71140 * 17 16 5 41 41 H 1.07997 * 122.40615 * 0.02562 * 22 21 19 42 42 H 1.08004 * 125.34943 * 179.97438 * 26 24 23 43 43 H 1.07994 * 126.07655 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 -1.2451 5 6 3.5674 -0.8481 -1.1702 6 1 3.9375 -1.3450 -2.0670 7 7 4.1570 0.4897 -1.0751 8 6 5.4411 0.7038 -1.4999 9 1 6.0193 -0.1136 -1.9048 10 6 5.9999 1.9712 -1.4093 11 7 7.2339 2.1771 -1.8181 12 14 5.0001 3.3848 -0.7084 13 1 5.2091 3.4588 0.7600 14 1 3.5598 3.1612 -0.9925 15 1 5.4364 4.6584 -1.3351 16 6 3.9568 -1.6658 0.0634 17 6 3.4651 -0.9471 1.3236 18 7 2.0226 -0.6996 1.1944 19 6 1.1675 -1.1063 2.1535 20 8 -0.0137 -0.8221 2.0762 21 6 1.6592 -1.8896 3.2885 22 6 1.0346 -2.9748 3.8138 23 6 1.6816 -3.5649 4.8915 24 7 1.5254 -4.6344 5.7774 25 1 0.7867 -5.2632 5.7794 26 6 2.5815 -4.6480 6.6375 27 6 3.4096 -3.6305 6.3406 28 6 2.8607 -2.9316 5.2377 29 16 3.1469 -1.5675 4.1644 30 1 -0.3633 0.6000 0.8344 31 1 -0.3633 0.4227 -0.9367 32 1 -0.3633 -1.0225 0.1023 33 1 1.7657 -0.1668 -2.1364 34 1 1.6028 -1.7253 -1.2910 35 1 3.6378 1.2238 -0.7111 36 1 7.6246 3.0628 -1.7544 37 1 3.4982 -2.6529 0.0051 38 1 5.0411 -1.7697 0.1035 39 1 3.6518 -1.5719 2.1970 40 1 3.9921 0.0007 1.4329 41 1 0.1016 -3.3517 3.4217 42 1 2.7301 -5.3629 7.4333 43 1 4.3298 -3.3896 6.8520 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044841501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:05 Heat of formation + Delta-G solvation = 54.790026 kcal Electronic energy + Delta-G solvation = -26755.763244 eV Core-core repulsion = 23121.749733 eV Total energy + Delta-G solvation = -3634.013511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.11893 -41.61902 -39.01925 -36.23569 -35.97863 -34.03484 -33.71283 -31.81335 -31.47951 -29.33964 -28.29660 -25.89183 -25.25490 -24.82719 -23.28919 -22.41441 -21.60339 -20.79466 -19.79340 -19.50453 -19.28895 -17.76065 -17.22356 -16.79228 -16.48837 -16.44601 -15.91321 -15.42279 -15.41011 -15.37041 -15.28839 -14.87912 -14.51731 -14.37008 -14.19637 -13.79916 -13.63668 -13.29273 -13.23503 -13.01736 -12.91920 -12.84867 -12.58868 -12.38162 -12.11236 -12.08719 -12.01583 -11.77372 -11.64688 -11.47968 -10.95853 -10.59941 -10.31745 -9.67213 -9.28079 -9.04253 -8.58235 -7.98826 -5.30574 -0.39841 0.35997 0.96387 1.37421 1.38511 1.45307 1.45757 1.71826 1.74699 2.06408 2.24619 2.49073 3.32978 3.42590 3.59161 3.83938 3.91642 3.97251 4.00955 4.18055 4.22240 4.24850 4.27097 4.41040 4.53922 4.57579 4.68639 4.72909 4.82579 4.88827 5.00512 5.00896 5.06482 5.08384 5.19547 5.20432 5.25986 5.37745 5.57646 5.64863 5.81736 5.83425 6.25028 6.31479 6.64352 7.01093 7.11404 7.87809 8.05956 9.22818 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.003739 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.474648 B = 7486.522932 C = 8360.295150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.141 3.859 3 H 0.057 0.943 4 C -0.125 4.125 5 C 0.171 3.829 6 H 0.056 0.944 7 N -0.747 5.747 8 C -0.217 4.217 9 H 0.064 0.936 10 C -0.059 4.059 11 N -0.983 5.983 12 Si 0.937 3.063 13 H -0.282 1.282 14 H -0.256 1.256 15 H -0.298 1.298 16 C -0.137 4.137 17 C 0.103 3.897 18 N -0.593 5.593 19 C 0.590 3.410 20 O -0.551 6.551 21 C -0.262 4.262 22 C -0.027 4.027 23 C 0.001 3.999 24 N -0.545 5.545 25 H 0.435 0.565 26 C 0.088 3.912 27 C -0.202 4.202 28 C -0.212 4.212 29 S 0.162 5.838 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.362 0.638 36 H 0.256 0.744 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.154 0.846 42 H 0.226 0.774 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.219 -16.999 17.292 28.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.039 3.961 3 H 0.075 0.925 4 C -0.163 4.163 5 C 0.063 3.937 6 H 0.074 0.926 7 N -0.391 5.391 8 C -0.348 4.348 9 H 0.082 0.918 10 C -0.250 4.250 11 N -0.634 5.634 12 Si 0.766 3.234 13 H -0.208 1.208 14 H -0.181 1.181 15 H -0.225 1.225 16 C -0.178 4.178 17 C -0.021 4.021 18 N -0.324 5.324 19 C 0.379 3.621 20 O -0.433 6.433 21 C -0.382 4.382 22 C -0.063 4.063 23 C -0.112 4.112 24 N -0.147 5.147 25 H 0.276 0.724 26 C -0.047 4.047 27 C -0.231 4.231 28 C -0.334 4.334 29 S 0.426 5.574 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.196 0.804 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.171 0.829 42 H 0.243 0.757 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.656 -15.895 16.984 26.974 hybrid contribution -1.138 0.146 0.238 1.171 sum -14.794 -15.749 17.221 27.631 Atomic orbital electron populations 1.22057 0.91765 1.03035 1.01209 1.21314 0.95995 0.94835 0.84001 0.92488 1.22189 0.95071 1.02005 0.97065 1.20411 0.91888 0.85203 0.96151 0.92618 1.42878 1.12743 1.07122 1.76369 1.19030 0.89272 0.94814 1.31680 0.91835 1.25313 0.97085 0.99773 1.02839 1.69857 1.15529 1.22380 1.55611 0.85670 0.79565 0.79880 0.78276 1.20812 1.18084 1.22466 1.22325 1.01257 0.98893 0.95329 1.22125 0.78781 1.01203 1.00014 1.48092 1.07785 1.56524 1.20031 1.17151 0.85255 0.78622 0.81095 1.90850 1.17087 1.57581 1.77734 1.23615 1.03174 1.05494 1.05925 1.19215 0.99904 0.93784 0.93377 1.17956 0.98396 0.95885 0.99001 1.42002 1.22676 1.24464 1.25554 0.72404 1.22632 0.86302 0.99982 0.95768 1.20545 1.04089 0.99020 0.99454 1.23827 1.01437 1.03116 1.05070 1.84239 1.19079 1.30069 1.24003 0.92148 0.91894 0.92012 0.89858 0.89332 0.80434 0.93547 0.90390 0.91592 0.88178 0.92261 0.82893 0.75745 0.82344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.55 7.60 71.98 0.55 -3.00 16 2 C 0.14 4.41 3.20 44.96 0.14 4.55 16 3 H 0.06 1.97 6.64 -2.39 -0.02 1.96 16 4 C -0.12 -3.67 5.07 30.66 0.16 -3.52 16 5 C 0.17 6.11 3.10 45.02 0.14 6.24 16 6 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 7 N -0.75 -33.22 4.11 -322.83 -1.33 -34.55 16 8 C -0.22 -11.87 10.41 84.03 0.87 -10.99 16 9 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 10 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 11 N -0.98 -62.32 13.97 21.65 0.30 -62.02 16 12 Si 0.94 45.61 27.73 68.60 1.90 47.51 16 13 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 14 H -0.26 -11.38 6.52 99.48 0.65 -10.73 16 15 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 16 C -0.14 -4.43 5.78 30.67 0.18 -4.25 16 17 C 0.10 3.28 5.60 86.36 0.48 3.77 16 18 N -0.59 -18.69 2.97 -800.06 -2.38 -21.07 16 19 C 0.59 18.72 7.35 86.37 0.63 19.35 16 20 O -0.55 -19.24 12.59 -4.45 -0.06 -19.30 16 21 C -0.26 -7.32 5.55 23.83 0.13 -7.18 16 22 C -0.03 -0.64 10.08 21.85 0.22 -0.42 16 23 C 0.00 0.02 7.67 38.03 0.29 0.31 16 24 N -0.54 -6.45 6.21 -188.39 -1.17 -7.62 16 25 H 0.44 2.16 8.96 -92.71 -0.83 1.32 16 26 C 0.09 0.84 11.85 83.16 0.99 1.82 16 27 C -0.20 -3.30 10.85 22.26 0.24 -3.05 16 28 C -0.21 -4.84 7.31 23.11 0.17 -4.67 16 29 S 0.16 4.25 19.78 -56.49 -1.12 3.14 16 30 H 0.06 1.93 6.59 -2.39 -0.02 1.91 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.81 6.90 -2.39 -0.02 1.79 16 33 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.36 15.96 3.92 -92.70 -0.36 15.59 16 36 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 39 H 0.10 2.93 3.72 -18.89 -0.07 2.86 16 40 H 0.06 2.18 7.74 -2.39 -0.02 2.16 16 41 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 42 H 0.23 -0.14 8.06 -2.91 -0.02 -0.16 16 43 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -73.26 348.82 1.57 -71.69 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -0.25 Total: 26.20 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 5.66 Total: -3.98 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -4.57 Total: -125.26 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.06 Total: -19.30 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.12 Total: 3.14 kcal Total: -73.26 1.57 -71.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044841501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.476 kcal (2) G-P(sol) polarization free energy of solvation -73.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds