Wall clock time and date at job start Tue Mar 31 2020 18:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.58554 * 2 1 4 4 C 1.53194 * 109.58568 * 120.43994 * 2 1 3 5 5 C 1.53045 * 109.30955 * 174.43761 * 4 2 1 6 6 H 1.08998 * 109.45953 * 58.62863 * 5 4 2 7 7 N 1.46500 * 109.45566 * 178.60148 * 5 4 2 8 8 C 1.36936 * 119.99855 * 205.02702 * 7 5 4 9 9 H 1.08004 * 119.99814 * 359.72322 * 8 7 5 10 10 C 1.38806 * 120.00219 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00038 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00173 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47361 * 59.99881 * 12 10 8 14 14 H 1.48499 * 109.47338 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47132 * 299.99582 * 12 10 8 16 16 C 1.53036 * 109.52678 * 298.61449 * 5 4 2 17 17 C 1.53193 * 109.31342 * 61.37467 * 16 5 4 18 18 N 1.46921 * 108.77533 * 305.36319 * 17 16 5 19 19 C 1.34779 * 120.63205 * 233.63254 * 18 17 16 20 20 O 1.21732 * 119.99936 * 175.31071 * 19 18 17 21 21 C 1.46412 * 120.00024 * 355.30375 * 19 18 17 22 22 C 1.35782 * 124.95955 * 151.39756 * 21 19 18 23 23 C 1.38872 * 115.18544 * 179.82942 * 22 21 19 24 24 N 1.39735 * 139.91328 * 180.08959 * 23 22 21 25 25 H 0.97000 * 125.63353 * 0.37553 * 24 23 22 26 26 C 1.36217 * 108.73252 * 180.34920 * 24 23 22 27 27 C 1.34500 * 109.29838 * 359.97438 * 26 24 23 28 28 C 1.38248 * 113.38835 * 0.45748 * 23 22 21 29 29 S 1.75620 * 124.95748 * 331.70350 * 21 19 18 30 30 H 1.08999 * 109.46701 * 179.50612 * 1 2 3 31 31 H 1.09001 * 109.46959 * 299.50647 * 1 2 3 32 32 H 1.08996 * 109.46975 * 59.51312 * 1 2 3 33 33 H 1.08999 * 109.50494 * 54.48402 * 4 2 1 34 34 H 1.08994 * 109.48422 * 294.38248 * 4 2 1 35 35 H 0.96994 * 120.00305 * 25.02539 * 7 5 4 36 36 H 0.97002 * 120.00165 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.49788 * 181.32526 * 16 5 4 38 38 H 1.08998 * 109.49949 * 301.42002 * 16 5 4 39 39 H 1.08993 * 109.58678 * 65.15450 * 17 16 5 40 40 H 1.09001 * 109.58539 * 185.43182 * 17 16 5 41 41 H 1.07996 * 122.40190 * 0.02562 * 22 21 19 42 42 H 1.08004 * 125.35163 * 179.97438 * 26 24 23 43 43 H 1.07996 * 126.07899 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7312 1.2444 5 6 3.5676 -0.8493 1.1690 6 1 4.0060 0.1462 1.0993 7 7 4.0653 -1.5186 2.3734 8 6 5.3495 -1.3014 2.7963 9 1 5.9968 -0.6402 2.2393 10 6 5.8213 -1.9359 3.9371 11 7 5.0344 -2.7468 4.6123 12 14 7.5729 -1.6391 4.5143 13 1 7.7608 -0.1947 4.8035 14 1 7.8288 -2.4284 5.7459 15 1 8.5220 -2.0589 3.4520 16 6 3.9570 -1.6655 -0.0656 17 6 3.4651 -0.9451 -1.3249 18 7 2.0227 -0.6980 -1.1954 19 6 1.1674 -1.1042 -2.1546 20 8 -0.0322 -0.9703 -1.9970 21 6 1.6812 -1.7065 -3.3862 22 6 1.0164 -2.6165 -4.1435 23 6 1.6938 -3.0517 -5.2750 24 7 1.5214 -3.9195 -6.3565 25 1 0.7368 -4.4647 -6.5242 26 6 2.6369 -3.8729 -7.1369 27 6 3.5186 -3.0102 -6.6009 28 6 2.9433 -2.4784 -5.4209 29 16 3.2506 -1.3629 -4.0957 30 1 -0.3633 -1.0276 -0.0089 31 1 -0.3633 0.5062 0.8944 32 1 -0.3633 0.5214 -0.8856 33 1 1.6032 -1.7273 1.2888 34 1 1.7658 -0.1699 2.1364 35 1 3.4852 -2.1155 2.8714 36 1 5.3642 -3.1905 5.4093 37 1 5.0413 -1.7693 -0.1059 38 1 3.4985 -2.6527 -0.0086 39 1 3.9904 0.0039 -1.4317 40 1 3.6543 -1.5678 -2.1994 41 1 0.0302 -2.9737 -3.8860 42 1 2.7895 -4.4398 -8.0435 43 1 4.4924 -2.7663 -6.9993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044841503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:10 Heat of formation + Delta-G solvation = 70.443145 kcal Electronic energy + Delta-G solvation = -26160.245296 eV Core-core repulsion = 22526.910555 eV Total energy + Delta-G solvation = -3633.334741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.36153 -40.35800 -37.44514 -35.28956 -34.50486 -32.72934 -31.92032 -31.10012 -29.38738 -28.22300 -26.94776 -24.61524 -23.95343 -22.99311 -22.18155 -21.26866 -20.64741 -19.94277 -18.65600 -18.45040 -17.11021 -16.74989 -15.94083 -15.59998 -15.42225 -14.82894 -14.70272 -14.49478 -14.33636 -13.96173 -13.70239 -13.62519 -13.23791 -13.09250 -12.76512 -12.55586 -12.34012 -12.16702 -11.98436 -11.69008 -11.59225 -11.33205 -10.93137 -10.88841 -10.76317 -10.73005 -10.39359 -10.25625 -9.83966 -9.82019 -9.68807 -9.08141 -8.90448 -8.45744 -8.20961 -7.73360 -6.96856 -5.76746 -3.06021 0.46194 1.31495 1.85639 2.26932 2.46477 2.69118 3.06682 3.25094 3.43757 3.48295 3.49274 4.45364 4.57954 4.67919 4.77651 4.99222 5.09966 5.17692 5.26750 5.30714 5.37739 5.49612 5.57329 5.58195 5.66248 5.74595 5.81726 5.83932 5.93954 6.03798 6.16624 6.28342 6.30239 6.39096 6.47533 6.50040 6.53282 6.56873 6.77329 6.91918 7.06248 7.16452 7.49522 7.68698 8.20862 8.41442 9.52608 10.10084 10.44914 11.45730 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.003069 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.549218 B = 9121.156079 C =10387.459570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.149 3.851 3 H 0.074 0.926 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.049 0.951 7 N -0.723 5.723 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.933 5.933 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.146 4.146 17 C 0.091 3.909 18 N -0.595 5.595 19 C 0.590 3.410 20 O -0.529 6.529 21 C -0.234 4.234 22 C -0.037 4.037 23 C 0.024 3.976 24 N -0.559 5.559 25 H 0.418 0.582 26 C 0.053 3.947 27 C -0.171 4.171 28 C -0.207 4.207 29 S 0.189 5.811 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.145 0.855 42 H 0.176 0.824 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.100 0.416 -23.965 24.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.092 0.908 4 C -0.174 4.174 5 C 0.068 3.932 6 H 0.067 0.933 7 N -0.363 5.363 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.581 5.581 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.187 4.187 17 C -0.034 4.034 18 N -0.327 5.327 19 C 0.377 3.623 20 O -0.408 6.408 21 C -0.354 4.354 22 C -0.073 4.073 23 C -0.090 4.090 24 N -0.160 5.160 25 H 0.256 0.744 26 C -0.080 4.080 27 C -0.201 4.201 28 C -0.328 4.328 29 S 0.453 5.547 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.163 0.837 42 H 0.193 0.807 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.475 1.412 -23.419 24.339 hybrid contribution -0.496 -1.505 -0.068 1.586 sum -6.971 -0.092 -23.487 24.500 Atomic orbital electron populations 1.22240 0.92751 1.03413 1.00948 1.21366 0.95525 0.95024 0.83468 0.90799 1.22310 0.97579 1.01029 0.96505 1.20174 0.90929 0.94996 0.87066 0.93340 1.42418 1.12941 1.54252 1.26712 1.19192 0.89082 1.22335 1.06516 0.91178 1.24746 0.98137 0.99776 0.98232 1.69655 1.35485 1.33320 1.19624 0.86283 0.84610 0.77458 0.77916 1.21260 1.21749 1.21257 1.22649 1.01849 1.00036 0.94207 1.22370 0.79483 1.01225 1.00351 1.48054 1.07627 1.56972 1.20054 1.16926 0.85889 0.77946 0.81516 1.90877 1.14798 1.55922 1.79246 1.23886 1.00336 1.08282 1.02893 1.19149 1.00295 0.96642 0.91212 1.17993 0.96610 1.00271 0.94101 1.41904 1.17143 1.36966 1.19981 0.74443 1.21851 0.86535 1.01929 0.97688 1.20137 1.01283 1.02728 0.95926 1.23714 0.99110 1.06873 1.03131 1.84156 1.13236 1.44243 1.13019 0.91477 0.93718 0.90827 0.91691 0.90471 0.78242 0.93456 0.90373 0.92064 0.90949 0.89457 0.83708 0.80665 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 7.60 37.16 0.28 -1.70 16 2 C 0.15 2.20 3.49 -67.59 -0.24 1.96 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.28 4.84 -26.61 -0.13 -2.40 16 5 C 0.18 3.43 2.73 -67.89 -0.19 3.25 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 N -0.72 -17.76 5.12 -53.39 -0.27 -18.04 16 8 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 9 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 11 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 12 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 C -0.15 -2.52 5.66 -26.61 -0.15 -2.67 16 17 C 0.09 1.27 5.53 -3.71 -0.02 1.25 16 18 N -0.59 -8.80 2.97 -166.84 -0.50 -9.29 16 19 C 0.59 9.03 7.50 -12.97 -0.10 8.94 16 20 O -0.53 -9.02 12.34 5.16 0.06 -8.95 16 21 C -0.23 -3.16 5.79 -37.17 -0.22 -3.38 16 22 C -0.04 -0.46 9.98 -40.23 -0.40 -0.86 16 23 C 0.02 0.26 7.67 -84.02 -0.64 -0.38 16 24 N -0.56 -4.36 6.21 -10.90 -0.07 -4.42 16 25 H 0.42 1.95 8.96 -40.82 -0.37 1.58 16 26 C 0.05 0.37 11.85 -16.93 -0.20 0.17 16 27 C -0.17 -1.56 10.84 -39.61 -0.43 -1.99 16 28 C -0.21 -2.40 7.31 -38.28 -0.28 -2.68 16 29 S 0.19 2.22 19.22 -107.50 -2.07 0.15 16 30 H 0.07 1.08 7.00 -51.93 -0.36 0.71 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.12 6.48 -51.93 -0.34 0.78 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.38 10.16 7.80 -40.82 -0.32 9.85 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.15 3.66 -22.62 -0.08 1.07 16 41 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 42 H 0.18 0.50 8.06 -52.48 -0.42 0.07 16 43 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -32.78 355.29 -10.40 -43.17 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.66 Total: 9.81 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.95 Total: -7.61 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.11 Total: -59.04 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.06 Total: -8.95 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.07 Total: 0.15 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.78 -10.40 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044841503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.615 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds