Wall clock time and date at job start Tue Mar 31 2020 18:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.58554 * 2 1 4 4 C 1.53194 * 109.58568 * 120.43994 * 2 1 3 5 5 C 1.53045 * 109.30955 * 174.43761 * 4 2 1 6 6 H 1.08998 * 109.45953 * 58.62863 * 5 4 2 7 7 N 1.46500 * 109.45566 * 178.60148 * 5 4 2 8 8 C 1.36936 * 119.99855 * 205.02702 * 7 5 4 9 9 H 1.08004 * 119.99814 * 359.72322 * 8 7 5 10 10 C 1.38806 * 120.00219 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00038 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00173 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47361 * 59.99881 * 12 10 8 14 14 H 1.48499 * 109.47338 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47132 * 299.99582 * 12 10 8 16 16 C 1.53036 * 109.52678 * 298.61449 * 5 4 2 17 17 C 1.53193 * 109.31342 * 61.37467 * 16 5 4 18 18 N 1.46921 * 108.77533 * 305.36319 * 17 16 5 19 19 C 1.34779 * 120.63205 * 233.63254 * 18 17 16 20 20 O 1.21732 * 119.99936 * 175.31071 * 19 18 17 21 21 C 1.46412 * 120.00024 * 355.30375 * 19 18 17 22 22 C 1.35782 * 124.95955 * 151.39756 * 21 19 18 23 23 C 1.38872 * 115.18544 * 179.82942 * 22 21 19 24 24 N 1.39735 * 139.91328 * 180.08959 * 23 22 21 25 25 H 0.97000 * 125.63353 * 0.37553 * 24 23 22 26 26 C 1.36217 * 108.73252 * 180.34920 * 24 23 22 27 27 C 1.34500 * 109.29838 * 359.97438 * 26 24 23 28 28 C 1.38248 * 113.38835 * 0.45748 * 23 22 21 29 29 S 1.75620 * 124.95748 * 331.70350 * 21 19 18 30 30 H 1.08999 * 109.46701 * 179.50612 * 1 2 3 31 31 H 1.09001 * 109.46959 * 299.50647 * 1 2 3 32 32 H 1.08996 * 109.46975 * 59.51312 * 1 2 3 33 33 H 1.08999 * 109.50494 * 54.48402 * 4 2 1 34 34 H 1.08994 * 109.48422 * 294.38248 * 4 2 1 35 35 H 0.96994 * 120.00305 * 25.02539 * 7 5 4 36 36 H 0.97002 * 120.00165 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.49788 * 181.32526 * 16 5 4 38 38 H 1.08998 * 109.49949 * 301.42002 * 16 5 4 39 39 H 1.08993 * 109.58678 * 65.15450 * 17 16 5 40 40 H 1.09001 * 109.58539 * 185.43182 * 17 16 5 41 41 H 1.07996 * 122.40190 * 0.02562 * 22 21 19 42 42 H 1.08004 * 125.35163 * 179.97438 * 26 24 23 43 43 H 1.07996 * 126.07899 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7312 1.2444 5 6 3.5676 -0.8493 1.1690 6 1 4.0060 0.1462 1.0993 7 7 4.0653 -1.5186 2.3734 8 6 5.3495 -1.3014 2.7963 9 1 5.9968 -0.6402 2.2393 10 6 5.8213 -1.9359 3.9371 11 7 5.0344 -2.7468 4.6123 12 14 7.5729 -1.6391 4.5143 13 1 7.7608 -0.1947 4.8035 14 1 7.8288 -2.4284 5.7459 15 1 8.5220 -2.0589 3.4520 16 6 3.9570 -1.6655 -0.0656 17 6 3.4651 -0.9451 -1.3249 18 7 2.0227 -0.6980 -1.1954 19 6 1.1674 -1.1042 -2.1546 20 8 -0.0322 -0.9703 -1.9970 21 6 1.6812 -1.7065 -3.3862 22 6 1.0164 -2.6165 -4.1435 23 6 1.6938 -3.0517 -5.2750 24 7 1.5214 -3.9195 -6.3565 25 1 0.7368 -4.4647 -6.5242 26 6 2.6369 -3.8729 -7.1369 27 6 3.5186 -3.0102 -6.6009 28 6 2.9433 -2.4784 -5.4209 29 16 3.2506 -1.3629 -4.0957 30 1 -0.3633 -1.0276 -0.0089 31 1 -0.3633 0.5062 0.8944 32 1 -0.3633 0.5214 -0.8856 33 1 1.6032 -1.7273 1.2888 34 1 1.7658 -0.1699 2.1364 35 1 3.4852 -2.1155 2.8714 36 1 5.3642 -3.1905 5.4093 37 1 5.0413 -1.7693 -0.1059 38 1 3.4985 -2.6527 -0.0086 39 1 3.9904 0.0039 -1.4317 40 1 3.6543 -1.5678 -2.1994 41 1 0.0302 -2.9737 -3.8860 42 1 2.7895 -4.4398 -8.0435 43 1 4.4924 -2.7663 -6.9993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044841503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:09 Heat of formation + Delta-G solvation = 49.747832 kcal Electronic energy + Delta-G solvation = -26161.142712 eV Core-core repulsion = 22526.910555 eV Total energy + Delta-G solvation = -3634.232157 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.09771 -41.54887 -38.80931 -36.28889 -36.09511 -34.01698 -33.66155 -31.79582 -31.08400 -29.22566 -28.24740 -26.09918 -25.19827 -24.52209 -23.19269 -22.22118 -21.60361 -21.29405 -19.66768 -19.43499 -19.03288 -17.76424 -17.13625 -16.73440 -16.56663 -16.44242 -15.66659 -15.54208 -15.45035 -15.38557 -15.25364 -14.76733 -14.49491 -14.29445 -13.94338 -13.67267 -13.57688 -13.28663 -13.11280 -12.97529 -12.89543 -12.78759 -12.63738 -12.33866 -12.20763 -12.06621 -12.02301 -11.81804 -11.57803 -11.36602 -10.87887 -10.57675 -10.28005 -9.67766 -9.08570 -8.96864 -8.52925 -7.91069 -5.20121 -0.44071 0.43339 0.98178 1.43177 1.49793 1.52559 1.58340 1.73594 1.76409 2.13676 2.25641 2.58737 3.41338 3.44016 3.73358 3.83554 3.97964 4.00946 4.07672 4.18687 4.21852 4.26622 4.31430 4.51681 4.57976 4.61192 4.69469 4.71359 4.76305 4.85992 4.98212 5.00435 5.05579 5.08762 5.15908 5.25511 5.41027 5.49249 5.55111 5.59683 5.67194 5.82704 6.29648 6.32103 6.63534 7.03996 7.36265 8.11326 8.34981 9.32426 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.003069 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.549218 B = 9121.156079 C =10387.459570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.152 3.848 3 H 0.093 0.907 4 C -0.123 4.123 5 C 0.174 3.826 6 H 0.054 0.946 7 N -0.737 5.737 8 C -0.236 4.236 9 H 0.080 0.920 10 C -0.078 4.078 11 N -0.973 5.973 12 Si 0.972 3.028 13 H -0.277 1.277 14 H -0.300 1.300 15 H -0.277 1.277 16 C -0.135 4.135 17 C 0.099 3.901 18 N -0.597 5.597 19 C 0.589 3.411 20 O -0.554 6.554 21 C -0.270 4.270 22 C -0.029 4.029 23 C -0.005 4.005 24 N -0.548 5.548 25 H 0.434 0.566 26 C 0.086 3.914 27 C -0.200 4.200 28 C -0.217 4.217 29 S 0.192 5.808 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.146 0.854 42 H 0.225 0.775 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.245 0.584 -27.000 27.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.049 3.951 3 H 0.111 0.889 4 C -0.162 4.162 5 C 0.066 3.934 6 H 0.072 0.928 7 N -0.376 5.376 8 C -0.368 4.368 9 H 0.098 0.902 10 C -0.270 4.270 11 N -0.624 5.624 12 Si 0.801 3.199 13 H -0.203 1.203 14 H -0.226 1.226 15 H -0.203 1.203 16 C -0.176 4.176 17 C -0.026 4.026 18 N -0.329 5.329 19 C 0.378 3.622 20 O -0.436 6.436 21 C -0.390 4.390 22 C -0.065 4.065 23 C -0.118 4.118 24 N -0.150 5.150 25 H 0.274 0.726 26 C -0.049 4.049 27 C -0.229 4.229 28 C -0.339 4.339 29 S 0.457 5.543 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.202 0.798 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.164 0.836 42 H 0.241 0.759 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.639 1.609 -26.500 27.141 hybrid contribution -0.810 -1.639 0.649 1.940 sum -6.449 -0.030 -25.850 26.642 Atomic orbital electron populations 1.22090 0.92425 1.02258 1.01437 1.21360 0.95697 0.95535 0.82486 0.88904 1.22162 0.95804 1.00500 0.97784 1.20401 0.92306 0.94821 0.85872 0.92835 1.42639 1.12209 1.54428 1.28290 1.19615 0.90031 1.21124 1.05980 0.90170 1.25558 1.02051 1.00414 0.98970 1.69826 1.37298 1.35082 1.20157 0.85237 0.80209 0.77428 0.77056 1.20316 1.22642 1.20262 1.22419 1.01204 0.99104 0.94913 1.22343 0.79165 1.02071 0.98989 1.48079 1.07848 1.57004 1.19990 1.17167 0.85597 0.77438 0.82039 1.90854 1.15744 1.56950 1.80003 1.23698 1.01956 1.10172 1.03130 1.19284 1.00169 0.95752 0.91272 1.17984 0.96745 1.01999 0.95099 1.42042 1.18116 1.36034 1.18842 0.72610 1.22660 0.84737 0.99831 0.97691 1.20555 1.02851 1.03881 0.95644 1.24062 0.99651 1.06483 1.03657 1.83871 1.12213 1.44578 1.13669 0.93442 0.92194 0.91267 0.93272 0.90584 0.79849 0.94201 0.91132 0.93900 0.88908 0.88237 0.83595 0.75897 0.81995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.62 7.60 71.98 0.55 -3.07 16 2 C 0.15 4.42 3.49 44.98 0.16 4.58 16 3 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 4 C -0.12 -4.20 4.84 30.67 0.15 -4.05 16 5 C 0.17 6.72 2.73 45.02 0.12 6.84 16 6 H 0.05 2.02 8.08 -2.39 -0.02 2.01 16 7 N -0.74 -36.84 5.12 -322.82 -1.65 -38.49 16 8 C -0.24 -12.82 9.93 84.03 0.83 -11.99 16 9 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 10 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 11 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 12 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 C -0.14 -4.68 5.66 30.67 0.17 -4.50 16 17 C 0.10 2.71 5.53 86.36 0.48 3.18 16 18 N -0.60 -17.51 2.97 -799.97 -2.38 -19.88 16 19 C 0.59 18.17 7.50 86.37 0.65 18.82 16 20 O -0.55 -19.25 12.34 -4.45 -0.05 -19.31 16 21 C -0.27 -7.29 5.79 23.83 0.14 -7.15 16 22 C -0.03 -0.70 9.98 21.85 0.22 -0.48 16 23 C -0.01 -0.11 7.67 38.04 0.29 0.18 16 24 N -0.55 -6.85 6.21 -188.39 -1.17 -8.02 16 25 H 0.43 2.65 8.96 -92.71 -0.83 1.82 16 26 C 0.09 0.81 11.85 83.16 0.99 1.80 16 27 C -0.20 -3.04 10.84 22.25 0.24 -2.80 16 28 C -0.22 -4.65 7.31 23.11 0.17 -4.48 16 29 S 0.19 4.36 19.22 -56.49 -1.09 3.27 16 30 H 0.05 1.55 7.00 -2.39 -0.02 1.54 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 2.09 6.48 -2.39 -0.02 2.07 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.37 20.29 7.80 -92.71 -0.72 19.56 16 36 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.07 2.53 8.14 -2.38 -0.02 2.52 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.10 2.56 3.66 -21.02 -0.08 2.49 16 41 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 42 H 0.22 -0.11 8.06 -2.91 -0.02 -0.13 16 43 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -72.34 355.29 1.03 -71.31 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.56 Total: 30.01 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 5.62 Total: -7.13 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -4.92 Total: -125.96 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.31 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.09 Total: 3.27 kcal Total: -72.34 1.03 -71.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044841503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.061 kcal (2) G-P(sol) polarization free energy of solvation -72.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds