Wall clock time and date at job start Tue Mar 31 2020 18:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.70510 * 2 1 4 4 C 1.53200 * 109.58456 * 120.35206 * 2 1 3 5 5 C 1.53040 * 109.31323 * 174.42333 * 4 2 1 6 6 H 1.08997 * 109.46066 * 178.62517 * 5 4 2 7 7 N 1.46506 * 109.46057 * 58.65244 * 5 4 2 8 8 C 1.36931 * 119.99748 * 154.99811 * 7 5 4 9 9 H 1.07993 * 120.00532 * 359.73040 * 8 7 5 10 10 C 1.38817 * 119.99857 * 179.72324 * 8 7 5 11 11 N 1.31618 * 119.99934 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00172 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.46821 * 90.00002 * 12 10 8 14 14 H 1.48495 * 109.47217 * 210.00550 * 12 10 8 15 15 H 1.48504 * 109.47131 * 330.00367 * 12 10 8 16 16 C 1.53039 * 109.53704 * 298.63370 * 5 4 2 17 17 C 1.53195 * 109.31337 * 61.36319 * 16 5 4 18 18 N 1.46923 * 108.77681 * 305.36697 * 17 16 5 19 19 C 1.34776 * 120.63163 * 233.58399 * 18 17 16 20 20 O 1.21729 * 120.00141 * 185.61319 * 19 18 17 21 21 C 1.46413 * 119.99785 * 5.61925 * 19 18 17 22 22 C 1.35781 * 124.95638 * 217.66444 * 21 19 18 23 23 C 1.38871 * 115.18460 * 179.82457 * 22 21 19 24 24 N 1.39740 * 139.91617 * 180.09336 * 23 22 21 25 25 H 0.97003 * 125.63291 * 0.36558 * 24 23 22 26 26 C 1.36219 * 108.73710 * 180.34804 * 24 23 22 27 27 C 1.34504 * 109.29171 * 359.97438 * 26 24 23 28 28 C 1.38241 * 113.39233 * 0.45441 * 23 22 21 29 29 S 1.75617 * 124.95996 * 37.96314 * 21 19 18 30 30 H 1.08995 * 109.47126 * 292.28930 * 1 2 3 31 31 H 1.08997 * 109.46721 * 52.28907 * 1 2 3 32 32 H 1.09002 * 109.46802 * 172.28933 * 1 2 3 33 33 H 1.08997 * 109.49834 * 54.46697 * 4 2 1 34 34 H 1.09006 * 109.52149 * 294.38715 * 4 2 1 35 35 H 0.96999 * 119.99899 * 334.72893 * 7 5 4 36 36 H 0.96996 * 119.99936 * 180.02562 * 11 10 8 37 37 H 1.08999 * 109.49683 * 181.31517 * 16 5 4 38 38 H 1.08995 * 109.49694 * 301.41537 * 16 5 4 39 39 H 1.09002 * 109.58408 * 185.57587 * 17 16 5 40 40 H 1.09007 * 109.69962 * 65.22097 * 17 16 5 41 41 H 1.07997 * 122.40979 * 359.97438 * 22 21 19 42 42 H 1.07997 * 125.35116 * 179.97438 * 26 24 23 43 43 H 1.07999 * 126.07105 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0436 -0.7294 1.2455 5 6 3.5675 -0.8480 1.1703 6 1 3.9377 -1.3449 2.0670 7 7 4.1571 0.4898 1.0750 8 6 5.4414 0.7038 1.4991 9 1 6.0182 -0.1126 1.9079 10 6 6.0020 1.9701 1.4035 11 7 5.2989 2.9652 0.9057 12 14 7.7542 2.2619 1.9814 13 1 8.6921 2.0328 0.8531 14 1 7.8905 3.6602 2.4623 15 1 8.0731 1.3245 3.0882 16 6 3.9569 -1.6658 -0.0632 17 6 3.4651 -0.9471 -1.3235 18 7 2.0226 -0.6997 -1.1944 19 6 1.1675 -1.1063 -2.1535 20 8 -0.0104 -0.8068 -2.0856 21 6 1.6554 -1.9085 -3.2769 22 6 1.2241 -1.7946 -4.5594 23 6 1.8291 -2.6562 -5.4650 24 7 1.7957 -2.9726 -6.8257 25 1 1.2301 -2.5496 -7.4906 26 6 2.6890 -3.9729 -7.0644 27 6 3.2952 -4.3116 -5.9124 28 6 2.7662 -3.4914 -4.8860 29 16 2.8783 -3.1636 -3.1612 30 1 -0.3633 0.3898 0.9508 31 1 -0.3632 0.6286 -0.8130 32 1 -0.3633 -1.0184 -0.1379 33 1 1.6029 -1.7252 1.2915 34 1 1.7660 -0.1671 2.1372 35 1 3.6390 1.2231 0.7079 36 1 5.6908 3.8499 0.8386 37 1 5.0412 -1.7697 -0.1034 38 1 3.4983 -2.6528 -0.0049 39 1 3.6519 -1.5720 -2.1969 40 1 3.9902 0.0017 -1.4340 41 1 0.4669 -1.0833 -4.8544 42 1 2.8804 -4.4232 -8.0271 43 1 4.0509 -5.0736 -5.7916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044841505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:14 Heat of formation + Delta-G solvation = 71.211949 kcal Electronic energy + Delta-G solvation = -26652.142660 eV Core-core repulsion = 23018.841257 eV Total energy + Delta-G solvation = -3633.301403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.28584 -40.23290 -37.47947 -35.19886 -34.17066 -32.55585 -31.88979 -31.02978 -29.13687 -28.20582 -26.89749 -24.52378 -23.81345 -23.37717 -22.07923 -21.33258 -20.70659 -19.35938 -18.61745 -17.98143 -17.19650 -16.58443 -15.89272 -15.53530 -15.25128 -14.80628 -14.65388 -14.35519 -13.96601 -13.86998 -13.70175 -13.51991 -13.33857 -13.09956 -12.71985 -12.60289 -12.06659 -12.02850 -11.98014 -11.55542 -11.36740 -11.14072 -10.97328 -10.84193 -10.76838 -10.56311 -10.35951 -10.22447 -9.93865 -9.72998 -9.62211 -8.98076 -8.92371 -8.24258 -8.04753 -7.64481 -6.97341 -5.77538 -3.06411 0.58394 1.38745 1.95535 2.36264 2.55359 2.79318 3.21509 3.37673 3.42976 3.48674 3.50048 4.58615 4.59508 4.74107 4.86171 5.10157 5.27138 5.33085 5.34176 5.41419 5.55617 5.62388 5.65797 5.74040 5.78796 5.84005 5.90064 5.92003 6.03883 6.19181 6.20222 6.33432 6.37628 6.47210 6.52994 6.59948 6.62501 6.75259 6.80151 6.87132 7.07723 7.23547 7.70025 7.71547 8.36960 8.40839 9.52331 10.09034 10.43987 11.44918 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014376 B = 0.003532 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.241485 B = 7926.474066 C = 9015.425143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.147 3.853 3 H 0.083 0.917 4 C -0.133 4.133 5 C 0.173 3.827 6 H 0.052 0.948 7 N -0.722 5.722 8 C -0.238 4.238 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.290 1.290 14 H -0.293 1.293 15 H -0.282 1.282 16 C -0.148 4.148 17 C 0.100 3.900 18 N -0.589 5.589 19 C 0.587 3.413 20 O -0.532 6.532 21 C -0.227 4.227 22 C -0.046 4.046 23 C 0.026 3.974 24 N -0.559 5.559 25 H 0.418 0.582 26 C 0.051 3.949 27 C -0.170 4.170 28 C -0.208 4.208 29 S 0.193 5.807 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.144 0.856 42 H 0.176 0.824 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.480 -14.302 -14.145 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.045 3.955 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.063 3.937 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.218 1.218 14 H -0.219 1.219 15 H -0.208 1.208 16 C -0.189 4.189 17 C -0.024 4.024 18 N -0.321 5.321 19 C 0.374 3.626 20 O -0.412 6.412 21 C -0.347 4.347 22 C -0.081 4.081 23 C -0.087 4.087 24 N -0.160 5.160 25 H 0.255 0.745 26 C -0.082 4.082 27 C -0.200 4.200 28 C -0.329 4.329 29 S 0.457 5.543 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.161 0.839 42 H 0.193 0.807 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.166 -14.644 -12.897 20.787 hybrid contribution 0.004 1.201 -1.484 1.909 sum -7.161 -13.443 -14.380 20.947 Atomic orbital electron populations 1.22188 0.93181 1.03283 1.00636 1.21296 0.94856 0.96148 0.83245 0.89939 1.22258 0.97447 1.00290 0.97250 1.20206 0.90413 0.88118 0.94985 0.92966 1.42515 1.13872 1.04750 1.75300 1.19233 0.89782 0.94247 1.33702 0.91157 1.24720 0.98221 0.95935 1.01938 1.69652 1.36435 1.00719 1.51243 0.86226 0.84867 0.77061 0.78242 1.21788 1.21898 1.20813 1.22528 1.01630 0.97882 0.96879 1.22218 0.78985 1.02384 0.98785 1.48059 1.07763 1.56407 1.19830 1.16933 0.85570 0.79192 0.80953 1.90861 1.16486 1.57688 1.76188 1.23918 1.06447 1.06648 0.97701 1.19108 1.00207 0.99092 0.89712 1.17983 1.03427 1.02574 0.84732 1.41887 1.35594 1.32117 1.06447 0.74497 1.21823 0.93787 0.92760 0.99865 1.20120 1.05741 1.04266 0.89849 1.23587 1.05021 1.04691 0.99577 1.84164 1.37715 1.32203 1.00190 0.93739 0.90928 0.91885 0.92021 0.90557 0.78138 0.93531 0.90517 0.93192 0.90253 0.89280 0.83854 0.80723 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 7.61 37.16 0.28 -1.91 16 2 C 0.15 2.53 3.19 -67.59 -0.22 2.32 16 3 H 0.08 1.60 6.64 -51.93 -0.34 1.25 16 4 C -0.13 -2.22 5.07 -26.61 -0.13 -2.36 16 5 C 0.17 3.27 3.10 -67.89 -0.21 3.06 16 6 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 7 N -0.72 -16.98 4.31 -53.38 -0.23 -17.21 16 8 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 11 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 12 Si 0.90 21.90 29.55 -169.99 -5.02 16.88 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 16 C -0.15 -2.49 5.78 -26.61 -0.15 -2.65 16 17 C 0.10 1.69 5.72 -3.71 -0.02 1.67 16 18 N -0.59 -9.99 2.97 -166.84 -0.50 -10.49 16 19 C 0.59 9.95 7.33 -12.97 -0.10 9.86 16 20 O -0.53 -9.89 12.59 5.16 0.06 -9.83 16 21 C -0.23 -3.38 5.58 -37.17 -0.21 -3.59 16 22 C -0.05 -0.61 10.04 -40.23 -0.40 -1.02 16 23 C 0.03 0.32 7.67 -84.02 -0.64 -0.32 16 24 N -0.56 -4.76 6.21 -10.90 -0.07 -4.82 16 25 H 0.42 2.22 8.96 -40.82 -0.37 1.85 16 26 C 0.05 0.38 11.85 -16.92 -0.20 0.18 16 27 C -0.17 -1.69 10.84 -39.61 -0.43 -2.12 16 28 C -0.21 -2.61 7.31 -38.29 -0.28 -2.89 16 29 S 0.19 2.55 19.81 -107.50 -2.13 0.42 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.25 6.71 -51.93 -0.35 0.91 16 32 H 0.06 1.05 6.78 -51.93 -0.35 0.70 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.38 9.67 6.06 -40.82 -0.25 9.42 16 36 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.22 3.58 -25.26 -0.09 1.13 16 40 H 0.09 1.77 7.74 -51.92 -0.40 1.36 16 41 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -31.77 351.92 -10.31 -42.08 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.50 Total: 10.96 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.96 Total: -6.63 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.07 Total: -59.18 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.06 Total: -9.83 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.13 Total: 0.42 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.77 -10.31 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044841505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.290 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds