Wall clock time and date at job start Tue Mar 31 2020 18:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.70510 * 2 1 4 4 C 1.53200 * 109.58456 * 120.35206 * 2 1 3 5 5 C 1.53040 * 109.31323 * 174.42333 * 4 2 1 6 6 H 1.08997 * 109.46066 * 178.62517 * 5 4 2 7 7 N 1.46506 * 109.46057 * 58.65244 * 5 4 2 8 8 C 1.36931 * 119.99748 * 154.99811 * 7 5 4 9 9 H 1.07993 * 120.00532 * 359.73040 * 8 7 5 10 10 C 1.38817 * 119.99857 * 179.72324 * 8 7 5 11 11 N 1.31618 * 119.99934 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00172 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.46821 * 90.00002 * 12 10 8 14 14 H 1.48495 * 109.47217 * 210.00550 * 12 10 8 15 15 H 1.48504 * 109.47131 * 330.00367 * 12 10 8 16 16 C 1.53039 * 109.53704 * 298.63370 * 5 4 2 17 17 C 1.53195 * 109.31337 * 61.36319 * 16 5 4 18 18 N 1.46923 * 108.77681 * 305.36697 * 17 16 5 19 19 C 1.34776 * 120.63163 * 233.58399 * 18 17 16 20 20 O 1.21729 * 120.00141 * 185.61319 * 19 18 17 21 21 C 1.46413 * 119.99785 * 5.61925 * 19 18 17 22 22 C 1.35781 * 124.95638 * 217.66444 * 21 19 18 23 23 C 1.38871 * 115.18460 * 179.82457 * 22 21 19 24 24 N 1.39740 * 139.91617 * 180.09336 * 23 22 21 25 25 H 0.97003 * 125.63291 * 0.36558 * 24 23 22 26 26 C 1.36219 * 108.73710 * 180.34804 * 24 23 22 27 27 C 1.34504 * 109.29171 * 359.97438 * 26 24 23 28 28 C 1.38241 * 113.39233 * 0.45441 * 23 22 21 29 29 S 1.75617 * 124.95996 * 37.96314 * 21 19 18 30 30 H 1.08995 * 109.47126 * 292.28930 * 1 2 3 31 31 H 1.08997 * 109.46721 * 52.28907 * 1 2 3 32 32 H 1.09002 * 109.46802 * 172.28933 * 1 2 3 33 33 H 1.08997 * 109.49834 * 54.46697 * 4 2 1 34 34 H 1.09006 * 109.52149 * 294.38715 * 4 2 1 35 35 H 0.96999 * 119.99899 * 334.72893 * 7 5 4 36 36 H 0.96996 * 119.99936 * 180.02562 * 11 10 8 37 37 H 1.08999 * 109.49683 * 181.31517 * 16 5 4 38 38 H 1.08995 * 109.49694 * 301.41537 * 16 5 4 39 39 H 1.09002 * 109.58408 * 185.57587 * 17 16 5 40 40 H 1.09007 * 109.69962 * 65.22097 * 17 16 5 41 41 H 1.07997 * 122.40979 * 359.97438 * 22 21 19 42 42 H 1.07997 * 125.35116 * 179.97438 * 26 24 23 43 43 H 1.07999 * 126.07105 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0436 -0.7294 1.2455 5 6 3.5675 -0.8480 1.1703 6 1 3.9377 -1.3449 2.0670 7 7 4.1571 0.4898 1.0750 8 6 5.4414 0.7038 1.4991 9 1 6.0182 -0.1126 1.9079 10 6 6.0020 1.9701 1.4035 11 7 5.2989 2.9652 0.9057 12 14 7.7542 2.2619 1.9814 13 1 8.6921 2.0328 0.8531 14 1 7.8905 3.6602 2.4623 15 1 8.0731 1.3245 3.0882 16 6 3.9569 -1.6658 -0.0632 17 6 3.4651 -0.9471 -1.3235 18 7 2.0226 -0.6997 -1.1944 19 6 1.1675 -1.1063 -2.1535 20 8 -0.0104 -0.8068 -2.0856 21 6 1.6554 -1.9085 -3.2769 22 6 1.2241 -1.7946 -4.5594 23 6 1.8291 -2.6562 -5.4650 24 7 1.7957 -2.9726 -6.8257 25 1 1.2301 -2.5496 -7.4906 26 6 2.6890 -3.9729 -7.0644 27 6 3.2952 -4.3116 -5.9124 28 6 2.7662 -3.4914 -4.8860 29 16 2.8783 -3.1636 -3.1612 30 1 -0.3633 0.3898 0.9508 31 1 -0.3632 0.6286 -0.8130 32 1 -0.3633 -1.0184 -0.1379 33 1 1.6029 -1.7252 1.2915 34 1 1.7660 -0.1671 2.1372 35 1 3.6390 1.2231 0.7079 36 1 5.6908 3.8499 0.8386 37 1 5.0412 -1.7697 -0.1034 38 1 3.4983 -2.6528 -0.0049 39 1 3.6519 -1.5720 -2.1969 40 1 3.9902 0.0017 -1.4340 41 1 0.4669 -1.0833 -4.8544 42 1 2.8804 -4.4232 -8.0271 43 1 4.0509 -5.0736 -5.7916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044841505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:13 Heat of formation + Delta-G solvation = 51.731233 kcal Electronic energy + Delta-G solvation = -26652.987407 eV Core-core repulsion = 23018.841257 eV Total energy + Delta-G solvation = -3634.146150 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.10191 -41.56506 -38.91882 -36.20715 -35.86880 -33.96016 -33.62360 -31.79707 -30.89234 -29.27236 -28.24815 -25.85303 -25.48351 -24.83389 -23.21723 -22.39305 -21.61082 -20.65689 -19.67424 -19.26143 -19.06840 -17.75638 -17.25083 -16.75230 -16.49069 -16.19783 -15.73906 -15.64900 -15.54807 -15.32000 -14.99351 -14.69686 -14.51293 -14.29655 -14.25335 -13.58686 -13.53097 -13.33633 -13.00032 -12.93474 -12.87382 -12.68635 -12.55042 -12.41420 -12.13053 -12.08253 -11.97883 -11.69363 -11.56698 -11.39894 -10.89775 -10.58155 -10.30168 -9.60153 -9.02787 -8.94663 -8.54654 -7.88196 -5.15591 -0.41319 0.39902 0.98561 1.46001 1.50945 1.51340 1.59531 1.75159 1.78082 2.10020 2.26778 2.60723 3.44485 3.46937 3.87433 3.90304 3.98792 4.01291 4.08138 4.18818 4.23837 4.29095 4.36162 4.47457 4.57750 4.62097 4.73376 4.76392 4.85991 4.91781 5.00587 5.05887 5.08059 5.12401 5.23768 5.25765 5.34077 5.40308 5.59418 5.59807 5.69262 5.82590 6.33434 6.38048 6.64299 7.04748 7.40501 8.16095 8.39683 9.35237 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014376 B = 0.003532 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.241485 B = 7926.474066 C = 9015.425143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.147 3.853 3 H 0.054 0.946 4 C -0.122 4.122 5 C 0.166 3.834 6 H 0.054 0.946 7 N -0.731 5.731 8 C -0.230 4.230 9 H 0.078 0.922 10 C -0.075 4.075 11 N -0.970 5.970 12 Si 0.967 3.033 13 H -0.290 1.290 14 H -0.302 1.302 15 H -0.269 1.269 16 C -0.138 4.138 17 C 0.108 3.892 18 N -0.591 5.591 19 C 0.587 3.413 20 O -0.556 6.556 21 C -0.267 4.267 22 C -0.032 4.032 23 C -0.003 4.003 24 N -0.547 5.547 25 H 0.434 0.566 26 C 0.087 3.913 27 C -0.200 4.200 28 C -0.213 4.213 29 S 0.186 5.814 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.373 0.627 36 H 0.247 0.753 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.147 0.853 42 H 0.226 0.774 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 -16.981 -16.015 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.044 3.956 3 H 0.072 0.928 4 C -0.161 4.161 5 C 0.058 3.942 6 H 0.072 0.928 7 N -0.372 5.372 8 C -0.362 4.362 9 H 0.096 0.904 10 C -0.267 4.267 11 N -0.622 5.622 12 Si 0.797 3.203 13 H -0.217 1.217 14 H -0.229 1.229 15 H -0.194 1.194 16 C -0.179 4.179 17 C -0.016 4.016 18 N -0.322 5.322 19 C 0.376 3.624 20 O -0.437 6.437 21 C -0.387 4.387 22 C -0.068 4.068 23 C -0.116 4.116 24 N -0.149 5.149 25 H 0.275 0.725 26 C -0.048 4.048 27 C -0.229 4.229 28 C -0.336 4.336 29 S 0.450 5.550 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.206 0.794 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.165 0.835 42 H 0.243 0.757 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.874 -17.364 -14.762 23.805 hybrid contribution -0.136 1.887 -1.117 2.197 sum -7.010 -15.476 -15.879 23.255 Atomic orbital electron populations 1.22024 0.92130 1.02798 1.00907 1.21218 0.95543 0.94900 0.83952 0.92814 1.22152 0.95769 1.01392 0.96809 1.20444 0.91711 0.86167 0.95887 0.92765 1.42676 1.13147 1.06342 1.75035 1.19618 0.90750 0.94155 1.31636 0.90385 1.25452 1.01826 0.96070 1.03378 1.69816 1.37969 1.00788 1.53591 0.85232 0.80747 0.76405 0.77943 1.21716 1.22893 1.19433 1.22390 1.01380 0.98623 0.95517 1.22089 0.78744 1.00879 0.99870 1.48049 1.07725 1.56485 1.19978 1.17193 0.85220 0.78884 0.81124 1.90835 1.17318 1.58753 1.76805 1.23664 1.08963 1.08479 0.97561 1.19257 0.99309 0.98568 0.89649 1.17941 1.04204 1.03078 0.86416 1.42024 1.35579 1.31928 1.05363 0.72549 1.22664 0.90756 0.90339 1.01043 1.20551 1.07257 1.05239 0.89821 1.23918 1.05239 1.05232 0.99173 1.83902 1.37491 1.31966 1.01611 0.92097 0.92447 0.92153 0.89769 0.90534 0.79434 0.94369 0.91155 0.90565 0.88396 0.92895 0.83513 0.75729 0.81964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 7.61 71.98 0.55 -3.42 16 2 C 0.15 5.19 3.19 44.98 0.14 5.33 16 3 H 0.05 2.21 6.64 -2.39 -0.02 2.20 16 4 C -0.12 -4.03 5.07 30.67 0.16 -3.87 16 5 C 0.17 6.25 3.10 45.02 0.14 6.39 16 6 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 7 N -0.73 -35.12 4.31 -322.81 -1.39 -36.52 16 8 C -0.23 -12.23 9.93 84.04 0.83 -11.39 16 9 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 10 C -0.08 -4.23 5.50 84.86 0.47 -3.77 16 11 N -0.97 -58.86 13.06 21.65 0.28 -58.58 16 12 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 13 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 14 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 16 C -0.14 -4.60 5.78 30.67 0.18 -4.42 16 17 C 0.11 3.74 5.72 86.36 0.49 4.24 16 18 N -0.59 -20.57 2.97 -799.95 -2.38 -22.94 16 19 C 0.59 20.37 7.33 86.37 0.63 21.00 16 20 O -0.56 -21.15 12.59 -4.44 -0.06 -21.21 16 21 C -0.27 -8.02 5.58 23.83 0.13 -7.88 16 22 C -0.03 -0.85 10.04 21.85 0.22 -0.63 16 23 C 0.00 -0.08 7.67 38.03 0.29 0.22 16 24 N -0.55 -7.39 6.21 -188.39 -1.17 -8.56 16 25 H 0.43 3.01 8.96 -92.71 -0.83 2.18 16 26 C 0.09 0.90 11.85 83.16 0.99 1.88 16 27 C -0.20 -3.29 10.84 22.25 0.24 -3.05 16 28 C -0.21 -4.98 7.31 23.11 0.17 -4.82 16 29 S 0.19 4.81 19.81 -56.49 -1.12 3.69 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 2.04 6.71 -2.39 -0.02 2.03 16 32 H 0.06 2.01 6.78 -2.39 -0.02 1.99 16 33 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 35 H 0.37 19.58 6.06 -92.71 -0.56 19.02 16 36 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.10 3.06 3.58 -19.34 -0.07 2.99 16 40 H 0.05 2.21 7.74 -2.38 -0.02 2.20 16 41 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 42 H 0.23 0.02 8.06 -2.91 -0.02 0.00 16 43 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -70.77 351.92 1.44 -69.33 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.39 Total: 31.29 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 5.63 Total: -4.19 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -4.66 Total: -126.59 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.06 Total: -21.21 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -1.12 Total: 3.69 kcal Total: -70.77 1.44 -69.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044841505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.060 kcal (2) G-P(sol) polarization free energy of solvation -70.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds