Wall clock time and date at job start Tue Mar 31 2020 18:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.59010 * 2 1 4 4 C 1.53199 * 109.58227 * 120.42575 * 2 1 3 5 5 C 1.53045 * 109.30664 * 174.42001 * 4 2 1 6 6 C 1.53033 * 109.54110 * 298.63078 * 5 4 2 7 7 H 1.09000 * 109.52604 * 181.33254 * 6 5 4 8 8 N 1.46501 * 109.50074 * 301.41911 * 6 5 4 9 9 C 1.34774 * 120.00003 * 204.83667 * 8 6 5 10 10 O 1.21721 * 120.00129 * 359.97438 * 9 8 6 11 11 C 1.46501 * 120.00003 * 180.02562 * 9 8 6 12 12 C 1.36112 * 125.70890 * 179.71629 * 11 9 8 13 13 C 1.42231 * 107.61943 * 179.88428 * 12 11 9 14 14 C 1.45594 * 140.77423 * 180.02562 * 13 12 11 15 15 C 1.31815 * 114.63062 * 180.31938 * 14 13 12 16 16 S 1.75355 * 111.24210 * 359.97438 * 15 14 13 17 17 C 1.38175 * 106.99726 * 0.37325 * 13 12 11 18 18 N 1.37456 * 108.16551 * 359.77518 * 17 13 12 19 19 H 0.97005 * 125.68234 * 179.97438 * 18 17 13 20 20 C 1.53192 * 109.30939 * 61.36837 * 6 5 4 21 21 N 1.46916 * 108.77871 * 305.36275 * 20 6 5 22 22 C 1.36934 * 120.63650 * 233.58702 * 21 20 6 23 23 H 1.08000 * 120.00496 * 149.29656 * 22 21 20 24 24 C 1.38822 * 119.99687 * 329.29495 * 22 21 20 25 25 N 1.31620 * 119.99894 * 345.75041 * 24 22 21 26 26 Si 1.86801 * 119.99668 * 165.74981 * 24 22 21 27 27 H 1.48494 * 109.47391 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46889 * 120.00367 * 26 24 22 29 29 H 1.48491 * 109.47167 * 239.99841 * 26 24 22 30 30 H 1.08995 * 109.47615 * 180.28480 * 1 2 3 31 31 H 1.09002 * 109.46767 * 300.28859 * 1 2 3 32 32 H 1.09005 * 109.46985 * 60.28273 * 1 2 3 33 33 H 1.08997 * 109.49858 * 294.36983 * 4 2 1 34 34 H 1.08996 * 109.49653 * 54.47301 * 4 2 1 35 35 H 1.09006 * 109.45233 * 178.61443 * 5 4 2 36 36 H 1.08997 * 109.45086 * 58.65229 * 5 4 2 37 37 H 0.96997 * 119.99821 * 24.83725 * 8 6 5 38 38 H 1.07994 * 126.18869 * 0.02562 * 12 11 9 39 39 H 1.07992 * 122.68404 * 0.31365 * 14 13 12 40 40 H 1.07998 * 124.37792 * 179.97438 * 15 14 13 41 41 H 1.09003 * 109.58760 * 185.57527 * 20 6 5 42 42 H 1.09007 * 109.58738 * 65.15635 * 20 6 5 43 43 H 0.96997 * 119.99522 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0435 -0.7310 1.2446 5 6 3.5675 -0.8495 1.1691 6 6 3.9568 -1.6658 -0.0654 7 1 5.0411 -1.7701 -0.1060 8 7 3.3404 -2.9926 0.0112 9 6 3.8951 -4.0321 -0.6430 10 8 4.9080 -3.8685 -1.2980 11 6 3.2783 -5.3588 -0.5669 12 6 3.7347 -6.4836 -1.1827 13 6 2.8511 -7.5465 -0.8476 14 6 2.6561 -8.9693 -1.0875 15 6 1.5982 -9.4864 -0.4952 16 16 0.7280 -8.2728 0.4239 17 6 1.8697 -7.0145 -0.0333 18 7 2.1332 -5.6762 0.1370 19 1 1.6029 -5.0577 0.6635 20 6 3.4650 -0.9454 -1.3248 21 7 2.0226 -0.6982 -1.1953 22 6 1.1537 -1.1101 -2.1703 23 1 0.1439 -1.3910 -1.9102 24 6 1.5710 -1.1665 -3.4931 25 7 2.6865 -0.5703 -3.8573 26 14 0.5494 -2.0887 -4.7561 27 1 -0.6497 -2.6658 -4.0970 28 1 0.1226 -1.1523 -5.8267 29 1 1.3626 -3.1806 -5.3488 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8874 32 1 -0.3633 0.5095 -0.8926 33 1 1.7660 -0.1695 2.1367 34 1 1.6029 -1.7269 1.2892 35 1 3.9377 -1.3475 2.0653 36 1 4.0059 0.1460 1.0994 37 1 2.5331 -3.1228 0.5328 38 1 4.6107 -6.5563 -1.8101 39 1 3.3248 -9.5541 -1.7017 40 1 1.3053 -10.5234 -0.5667 41 1 3.6518 -1.5692 -2.1990 42 1 3.9904 0.0037 -1.4316 43 1 2.9782 -0.6102 -4.7815 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071725083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:21 Heat of formation + Delta-G solvation = 56.107705 kcal Electronic energy + Delta-G solvation = -27049.413357 eV Core-core repulsion = 23415.456985 eV Total energy + Delta-G solvation = -3633.956372 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.21157 -39.25006 -37.51011 -35.34220 -34.21738 -32.78378 -30.92425 -30.38698 -29.95316 -28.33073 -26.24177 -25.03060 -23.35457 -22.72732 -22.21713 -20.57268 -20.04677 -19.45689 -19.21550 -18.74703 -16.74586 -16.32552 -15.51399 -15.23229 -15.00308 -14.87460 -14.54251 -14.15224 -14.06653 -13.80901 -13.58565 -13.39215 -13.24595 -12.87070 -12.70982 -12.51050 -11.98880 -11.87373 -11.63595 -11.29953 -11.21486 -11.00399 -10.94190 -10.88191 -10.74193 -10.44034 -10.36516 -10.00420 -9.74729 -9.54686 -9.49214 -9.45386 -8.52930 -8.47805 -8.26330 -7.65933 -6.61706 -5.77592 -3.23840 1.04052 1.31642 1.53452 1.92730 2.95290 3.15208 3.37427 3.44539 3.46939 3.50456 3.78202 4.48293 4.67693 4.94537 5.08949 5.25090 5.29804 5.36324 5.41324 5.44666 5.53618 5.63330 5.73540 5.93644 6.02751 6.06498 6.08531 6.22004 6.25882 6.29068 6.37219 6.42930 6.48013 6.53012 6.60352 6.74500 6.81945 6.99510 7.05180 7.17843 7.32062 7.65012 7.81101 7.94618 8.47018 8.59880 9.21055 9.84821 10.41335 11.30330 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.004290 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.405366 B = 6525.698886 C = 7229.296983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.079 0.921 8 N -0.697 5.697 9 C 0.585 3.415 10 O -0.527 6.527 11 C 0.010 3.990 12 C -0.079 4.079 13 C -0.163 4.163 14 C -0.067 4.067 15 C -0.226 4.226 16 S 0.123 5.877 17 C -0.012 4.012 18 N -0.522 5.522 19 H 0.420 0.580 20 C 0.162 3.838 21 N -0.583 5.583 22 C -0.254 4.254 23 H 0.066 0.934 24 C 0.010 3.990 25 N -0.897 5.897 26 Si 0.894 3.106 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.288 1.288 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.389 0.611 38 H 0.156 0.844 39 H 0.144 0.856 40 H 0.168 0.832 41 H 0.096 0.904 42 H 0.028 0.972 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 -11.955 12.179 17.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.097 0.903 8 N -0.346 5.346 9 C 0.370 3.630 10 O -0.404 6.404 11 C -0.104 4.104 12 C -0.106 4.106 13 C -0.176 4.176 14 C -0.097 4.097 15 C -0.360 4.360 16 S 0.376 5.624 17 C -0.241 4.241 18 N -0.125 5.125 19 H 0.258 0.742 20 C 0.036 3.964 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.084 0.916 24 C -0.190 4.190 25 N -0.540 5.540 26 Si 0.724 3.276 27 H -0.204 1.204 28 H -0.217 1.217 29 H -0.215 1.215 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.223 0.777 38 H 0.173 0.827 39 H 0.161 0.839 40 H 0.185 0.815 41 H 0.114 0.886 42 H 0.046 0.954 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.270 -11.672 12.455 17.219 hybrid contribution -0.013 -0.167 -1.174 1.186 sum -2.283 -11.838 11.281 16.511 Atomic orbital electron populations 1.21790 0.96132 1.01070 1.00267 1.20470 0.92877 0.93708 0.87161 0.95656 1.22066 0.95167 1.00400 0.99286 1.21701 0.96979 1.00326 0.96711 1.21853 0.97100 0.81268 0.98474 0.90267 1.45751 1.29105 1.08996 1.50771 1.16848 0.84074 0.82082 0.79962 1.90850 1.24681 1.83840 1.41004 1.20302 0.90867 0.95956 1.03242 1.20706 1.00196 0.88691 1.01029 1.19370 0.98878 0.93921 1.05396 1.20332 0.97655 0.91852 0.99898 1.24806 1.01369 1.02880 1.06969 1.83799 1.27678 0.95878 1.55051 1.23481 1.03608 0.89156 1.07854 1.41438 1.22828 1.06083 1.42118 0.74206 1.21180 0.83848 0.97102 0.94316 1.44039 1.02673 1.64876 1.19018 1.19064 0.95338 1.38106 0.85839 0.91608 1.25091 0.97628 0.99159 0.97088 1.69978 1.23556 1.43769 1.16725 0.86362 0.79712 0.79606 0.81918 1.20420 1.21673 1.21465 0.93162 0.94435 0.91948 0.92747 0.93125 0.92997 0.90844 0.77704 0.82671 0.83886 0.81453 0.88605 0.95447 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.96 37.16 0.30 -2.08 16 2 C 0.16 3.13 3.50 -67.59 -0.24 2.90 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -1.96 5.21 -26.61 -0.14 -2.10 16 5 C -0.12 -1.79 5.58 -26.69 -0.15 -1.94 16 6 C 0.12 2.18 2.81 -67.81 -0.19 1.99 16 7 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 8 N -0.70 -12.06 4.91 -55.05 -0.27 -12.33 16 9 C 0.59 11.13 7.75 -12.93 -0.10 11.03 16 10 O -0.53 -11.82 16.51 5.17 0.09 -11.73 16 11 C 0.01 0.16 6.97 -82.47 -0.57 -0.41 16 12 C -0.08 -1.27 10.58 -38.81 -0.41 -1.68 16 13 C -0.16 -2.36 6.80 -105.45 -0.72 -3.08 16 14 C -0.07 -0.77 10.42 -38.54 -0.40 -1.17 16 15 C -0.23 -2.24 11.03 28.84 0.32 -1.93 16 16 S 0.12 1.32 23.24 -107.50 -2.50 -1.18 16 17 C -0.01 -0.17 8.41 -15.05 -0.13 -0.30 16 18 N -0.52 -7.28 6.08 -7.94 -0.05 -7.33 16 19 H 0.42 4.81 8.14 -40.82 -0.33 4.48 16 20 C 0.16 3.77 4.87 -3.72 -0.02 3.76 16 21 N -0.58 -13.50 2.90 -164.77 -0.48 -13.98 16 22 C -0.25 -6.60 8.55 -15.06 -0.13 -6.73 16 23 H 0.07 1.69 6.26 -52.49 -0.33 1.36 16 24 C 0.01 0.27 4.96 -17.43 -0.09 0.19 16 25 N -0.90 -26.17 11.22 55.49 0.62 -25.55 16 26 Si 0.89 22.15 29.58 -169.99 -5.03 17.12 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 H 0.05 0.88 7.44 -51.93 -0.39 0.50 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.22 7.63 -51.93 -0.40 0.82 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.74 6.40 -51.93 -0.33 0.41 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.39 5.87 5.84 -40.82 -0.24 5.64 16 38 H 0.16 2.38 8.06 -52.49 -0.42 1.95 16 39 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.10 2.66 6.18 -51.93 -0.32 2.34 16 42 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -31.87 357.97 -10.55 -42.42 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.67 Total: 8.72 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.67 Total: -1.55 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.17 Total: -59.19 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.50 Total: -1.18 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.87 -10.55 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071725083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.528 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds