Wall clock time and date at job start Tue Mar 31 2020 18:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.59010 * 2 1 4 4 C 1.53199 * 109.58227 * 120.42575 * 2 1 3 5 5 C 1.53045 * 109.30664 * 174.42001 * 4 2 1 6 6 C 1.53033 * 109.54110 * 298.63078 * 5 4 2 7 7 H 1.09000 * 109.52604 * 181.33254 * 6 5 4 8 8 N 1.46501 * 109.50074 * 301.41911 * 6 5 4 9 9 C 1.34774 * 120.00003 * 204.83667 * 8 6 5 10 10 O 1.21721 * 120.00129 * 359.97438 * 9 8 6 11 11 C 1.46501 * 120.00003 * 180.02562 * 9 8 6 12 12 C 1.36112 * 125.70890 * 179.71629 * 11 9 8 13 13 C 1.42231 * 107.61943 * 179.88428 * 12 11 9 14 14 C 1.45594 * 140.77423 * 180.02562 * 13 12 11 15 15 C 1.31815 * 114.63062 * 180.31938 * 14 13 12 16 16 S 1.75355 * 111.24210 * 359.97438 * 15 14 13 17 17 C 1.38175 * 106.99726 * 0.37325 * 13 12 11 18 18 N 1.37456 * 108.16551 * 359.77518 * 17 13 12 19 19 H 0.97005 * 125.68234 * 179.97438 * 18 17 13 20 20 C 1.53192 * 109.30939 * 61.36837 * 6 5 4 21 21 N 1.46916 * 108.77871 * 305.36275 * 20 6 5 22 22 C 1.36934 * 120.63650 * 233.58702 * 21 20 6 23 23 H 1.08000 * 120.00496 * 149.29656 * 22 21 20 24 24 C 1.38822 * 119.99687 * 329.29495 * 22 21 20 25 25 N 1.31620 * 119.99894 * 345.75041 * 24 22 21 26 26 Si 1.86801 * 119.99668 * 165.74981 * 24 22 21 27 27 H 1.48494 * 109.47391 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46889 * 120.00367 * 26 24 22 29 29 H 1.48491 * 109.47167 * 239.99841 * 26 24 22 30 30 H 1.08995 * 109.47615 * 180.28480 * 1 2 3 31 31 H 1.09002 * 109.46767 * 300.28859 * 1 2 3 32 32 H 1.09005 * 109.46985 * 60.28273 * 1 2 3 33 33 H 1.08997 * 109.49858 * 294.36983 * 4 2 1 34 34 H 1.08996 * 109.49653 * 54.47301 * 4 2 1 35 35 H 1.09006 * 109.45233 * 178.61443 * 5 4 2 36 36 H 1.08997 * 109.45086 * 58.65229 * 5 4 2 37 37 H 0.96997 * 119.99821 * 24.83725 * 8 6 5 38 38 H 1.07994 * 126.18869 * 0.02562 * 12 11 9 39 39 H 1.07992 * 122.68404 * 0.31365 * 14 13 12 40 40 H 1.07998 * 124.37792 * 179.97438 * 15 14 13 41 41 H 1.09003 * 109.58760 * 185.57527 * 20 6 5 42 42 H 1.09007 * 109.58738 * 65.15635 * 20 6 5 43 43 H 0.96997 * 119.99522 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0435 -0.7310 1.2446 5 6 3.5675 -0.8495 1.1691 6 6 3.9568 -1.6658 -0.0654 7 1 5.0411 -1.7701 -0.1060 8 7 3.3404 -2.9926 0.0112 9 6 3.8951 -4.0321 -0.6430 10 8 4.9080 -3.8685 -1.2980 11 6 3.2783 -5.3588 -0.5669 12 6 3.7347 -6.4836 -1.1827 13 6 2.8511 -7.5465 -0.8476 14 6 2.6561 -8.9693 -1.0875 15 6 1.5982 -9.4864 -0.4952 16 16 0.7280 -8.2728 0.4239 17 6 1.8697 -7.0145 -0.0333 18 7 2.1332 -5.6762 0.1370 19 1 1.6029 -5.0577 0.6635 20 6 3.4650 -0.9454 -1.3248 21 7 2.0226 -0.6982 -1.1953 22 6 1.1537 -1.1101 -2.1703 23 1 0.1439 -1.3910 -1.9102 24 6 1.5710 -1.1665 -3.4931 25 7 2.6865 -0.5703 -3.8573 26 14 0.5494 -2.0887 -4.7561 27 1 -0.6497 -2.6658 -4.0970 28 1 0.1226 -1.1523 -5.8267 29 1 1.3626 -3.1806 -5.3488 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8874 32 1 -0.3633 0.5095 -0.8926 33 1 1.7660 -0.1695 2.1367 34 1 1.6029 -1.7269 1.2892 35 1 3.9377 -1.3475 2.0653 36 1 4.0059 0.1460 1.0994 37 1 2.5331 -3.1228 0.5328 38 1 4.6107 -6.5563 -1.8101 39 1 3.3248 -9.5541 -1.7017 40 1 1.3053 -10.5234 -0.5667 41 1 3.6518 -1.5692 -2.1990 42 1 3.9904 0.0037 -1.4316 43 1 2.9782 -0.6102 -4.7815 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071725083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:20 Heat of formation + Delta-G solvation = 35.523743 kcal Electronic energy + Delta-G solvation = -27050.305945 eV Core-core repulsion = 23415.456985 eV Total energy + Delta-G solvation = -3634.848959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.37347 -40.72134 -39.08021 -36.31882 -35.85193 -34.54546 -32.39710 -31.77986 -31.54133 -29.45791 -27.85331 -26.78884 -24.60193 -23.93326 -23.68271 -22.13226 -21.28647 -20.68506 -20.51966 -20.07003 -18.26351 -17.89803 -17.17437 -16.71438 -16.31200 -16.00085 -15.79167 -15.63693 -15.45787 -15.30518 -15.11839 -14.73712 -14.57852 -14.42761 -14.04918 -13.80566 -13.61945 -13.03743 -12.91112 -12.80398 -12.67809 -12.61550 -12.55672 -12.45461 -12.16057 -12.09335 -11.76566 -11.61901 -11.32693 -11.17720 -11.08253 -10.57224 -10.55539 -10.08978 -9.27632 -8.64442 -8.57161 -7.85074 -5.31713 0.08010 0.24001 0.43385 1.07130 1.36036 1.40278 1.46749 1.84072 2.02473 2.18456 2.40391 2.46853 3.31589 3.60596 3.65322 3.84110 3.97197 4.03142 4.06836 4.15064 4.44545 4.45931 4.62134 4.63361 4.70785 4.75788 4.77966 4.93346 4.99967 5.04196 5.09117 5.14537 5.19541 5.24057 5.29366 5.42927 5.54309 5.56612 5.61362 5.65566 5.70837 5.72488 6.14072 6.42562 6.53455 7.15240 7.16844 7.90470 8.41368 9.20036 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.004290 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.405366 B = 6525.698886 C = 7229.296983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.015 0.985 4 C -0.119 4.119 5 C -0.111 4.111 6 C 0.128 3.872 7 H 0.070 0.930 8 N -0.685 5.685 9 C 0.581 3.419 10 O -0.573 6.573 11 C -0.013 4.013 12 C -0.092 4.092 13 C -0.182 4.182 14 C -0.088 4.088 15 C -0.210 4.210 16 S 0.163 5.837 17 C -0.024 4.024 18 N -0.514 5.514 19 H 0.430 0.570 20 C 0.172 3.828 21 N -0.594 5.594 22 C -0.236 4.236 23 H 0.075 0.925 24 C -0.051 4.051 25 N -0.934 5.934 26 Si 0.944 3.056 27 H -0.262 1.262 28 H -0.292 1.292 29 H -0.305 1.305 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.402 0.598 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.205 0.795 41 H 0.045 0.955 42 H 0.000 1.000 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.257 -13.954 15.382 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.032 0.968 4 C -0.158 4.158 5 C -0.149 4.149 6 C 0.022 3.978 7 H 0.088 0.912 8 N -0.335 5.335 9 C 0.369 3.631 10 O -0.454 6.454 11 C -0.126 4.126 12 C -0.121 4.121 13 C -0.195 4.195 14 C -0.118 4.118 15 C -0.343 4.343 16 S 0.416 5.584 17 C -0.253 4.253 18 N -0.118 5.118 19 H 0.270 0.730 20 C 0.045 3.955 21 N -0.318 5.318 22 C -0.366 4.366 23 H 0.092 0.908 24 C -0.246 4.246 25 N -0.581 5.581 26 Si 0.774 3.226 27 H -0.186 1.186 28 H -0.219 1.219 29 H -0.233 1.233 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.239 0.761 38 H 0.167 0.833 39 H 0.180 0.820 40 H 0.222 0.778 41 H 0.063 0.937 42 H 0.018 0.982 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.830 -13.663 15.730 21.388 hybrid contribution 0.698 0.391 -2.106 2.253 sum -4.132 -13.272 13.624 19.464 Atomic orbital electron populations 1.21723 0.94732 1.01286 1.00825 1.20784 0.94139 0.93287 0.86981 0.96764 1.21964 0.94681 1.00934 0.98216 1.21680 0.97324 1.00057 0.95791 1.21580 0.96567 0.81770 0.97919 0.91175 1.45605 1.29373 1.08158 1.50358 1.17217 0.83592 0.83204 0.79128 1.90815 1.26810 1.84761 1.42967 1.19897 0.92548 0.94847 1.05355 1.20872 1.00546 0.89652 1.00981 1.19717 0.98673 0.95290 1.05791 1.20532 0.99179 0.90599 1.01507 1.25322 0.99929 1.04303 1.04792 1.83759 1.26097 0.94221 1.54340 1.24045 1.04486 0.89258 1.07503 1.41272 1.22076 1.06609 1.41832 0.72956 1.20842 0.84296 0.95366 0.95020 1.44248 1.02158 1.65578 1.19855 1.19384 0.95646 1.35488 0.86124 0.90778 1.25735 0.98805 1.00993 0.99061 1.70141 1.25511 1.46305 1.16157 0.85533 0.78819 0.78039 0.80165 1.18562 1.21939 1.23305 0.93052 0.90566 0.94727 0.88949 0.92028 0.89483 0.90543 0.76127 0.83299 0.81962 0.77790 0.93659 0.98209 0.94792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 7.96 71.98 0.57 -3.60 16 2 C 0.15 5.57 3.50 44.98 0.16 5.73 16 3 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 4 C -0.12 -3.14 5.21 30.68 0.16 -2.98 16 5 C -0.11 -3.03 5.58 30.62 0.17 -2.86 16 6 C 0.13 4.73 2.81 45.07 0.13 4.85 16 7 H 0.07 2.74 7.58 -2.39 -0.02 2.72 16 8 N -0.69 -23.63 4.91 -446.30 -2.19 -25.82 16 9 C 0.58 22.91 7.75 86.40 0.67 23.58 16 10 O -0.57 -27.40 16.51 -4.42 -0.07 -27.47 16 11 C -0.01 -0.43 6.97 39.81 0.28 -0.16 16 12 C -0.09 -3.06 10.58 22.77 0.24 -2.82 16 13 C -0.18 -5.11 6.80 -20.40 -0.14 -5.25 16 14 C -0.09 -1.82 10.42 23.39 0.24 -1.57 16 15 C -0.21 -3.36 11.03 67.04 0.74 -2.62 16 16 S 0.16 2.95 23.24 -56.49 -1.31 1.63 16 17 C -0.02 -0.62 8.41 83.80 0.70 0.08 16 18 N -0.51 -13.80 6.08 -179.05 -1.09 -14.89 16 19 H 0.43 9.09 8.14 -92.70 -0.75 8.33 16 20 C 0.17 8.36 4.87 86.36 0.42 8.78 16 21 N -0.59 -27.82 2.90 -675.22 -1.96 -29.78 16 22 C -0.24 -12.40 8.55 84.04 0.72 -11.68 16 23 H 0.07 3.74 6.26 -2.91 -0.02 3.72 16 24 C -0.05 -2.90 4.96 84.86 0.42 -2.47 16 25 N -0.93 -57.69 11.22 21.65 0.24 -57.45 16 26 Si 0.94 46.90 29.58 68.60 2.03 48.92 16 27 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 28 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 29 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 30 H 0.05 1.65 7.44 -2.39 -0.02 1.63 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.03 1.30 7.63 -2.38 -0.02 1.28 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.52 6.40 -2.39 -0.02 1.51 16 35 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.40 11.47 5.84 -92.71 -0.54 10.93 16 38 H 0.15 4.91 8.06 -2.91 -0.02 4.88 16 39 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 40 H 0.21 1.72 8.06 -2.91 -0.02 1.69 16 41 H 0.04 2.68 6.18 -2.39 -0.01 2.66 16 42 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 43 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -74.77 357.97 0.90 -73.88 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.24 Total: 23.95 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 5.48 Total: 7.01 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -5.00 Total: -127.94 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.07 Total: -27.47 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.31 Total: 1.63 kcal Total: -74.77 0.90 -73.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071725083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.403 kcal (2) G-P(sol) polarization free energy of solvation -74.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds