Wall clock time and date at job start Tue Mar 31 2020 18:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58439 * 2 1 4 4 C 1.53191 * 109.58976 * 120.28310 * 2 1 3 5 5 C 1.53041 * 109.31254 * 174.56464 * 4 2 1 6 6 C 1.53036 * 109.53965 * 298.63797 * 5 4 2 7 7 H 1.09004 * 109.50093 * 301.41194 * 6 5 4 8 8 N 1.46500 * 109.49913 * 181.31441 * 6 5 4 9 9 C 1.34780 * 120.00236 * 154.99532 * 8 6 5 10 10 O 1.21725 * 119.99755 * 0.02562 * 9 8 6 11 11 C 1.46490 * 120.00258 * 179.97438 * 9 8 6 12 12 C 1.36110 * 125.71507 * 180.02562 * 11 9 8 13 13 C 1.42227 * 107.63131 * 180.02562 * 12 11 9 14 14 C 1.45587 * 140.78180 * 180.02562 * 13 12 11 15 15 C 1.31809 * 114.63396 * 179.97438 * 14 13 12 16 16 S 1.75348 * 111.24383 * 359.97438 * 15 14 13 17 17 C 1.38173 * 106.98988 * 359.97438 * 13 12 11 18 18 N 1.37454 * 108.17011 * 359.73979 * 17 13 12 19 19 H 0.97001 * 125.68863 * 180.29417 * 18 17 13 20 20 C 1.53194 * 109.31549 * 61.36447 * 6 5 4 21 21 N 1.46926 * 109.58537 * 239.72184 * 2 1 3 22 22 C 1.36935 * 120.63603 * 6.46146 * 21 2 1 23 23 H 1.08002 * 119.99660 * 330.34114 * 22 21 2 24 24 C 1.38810 * 120.00726 * 150.33821 * 22 21 2 25 25 N 1.31624 * 119.99291 * 344.65073 * 24 22 21 26 26 Si 1.86796 * 120.00435 * 164.64705 * 24 22 21 27 27 H 1.48498 * 109.46975 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47091 * 119.99903 * 26 24 22 29 29 H 1.48491 * 109.47212 * 240.00025 * 26 24 22 30 30 H 1.08993 * 109.47152 * 299.99270 * 1 2 3 31 31 H 1.08996 * 109.47418 * 59.99956 * 1 2 3 32 32 H 1.09007 * 109.46915 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.49969 * 294.51928 * 4 2 1 34 34 H 1.09001 * 109.49441 * 54.61989 * 4 2 1 35 35 H 1.09001 * 109.45767 * 58.65870 * 5 4 2 36 36 H 1.08998 * 109.45857 * 178.61761 * 5 4 2 37 37 H 0.96998 * 120.00464 * 335.00627 * 8 6 5 38 38 H 1.08007 * 126.18581 * 0.02562 * 12 11 9 39 39 H 1.08004 * 122.68133 * 0.02562 * 14 13 12 40 40 H 1.08004 * 124.37859 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.58713 * 65.15122 * 20 6 5 42 42 H 1.08999 * 109.58856 * 185.43562 * 20 6 5 43 43 H 0.97004 * 119.99680 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1728 6 6 3.9604 -1.6607 -0.0600 7 1 3.5038 -2.6488 -0.0020 8 7 5.4181 -1.7973 -0.1124 9 6 5.9745 -2.8392 -0.7614 10 8 5.2658 -3.6666 -1.3045 11 6 7.4321 -2.9755 -0.8142 12 6 8.1145 -3.9764 -1.4348 13 6 9.5030 -3.7322 -1.2466 14 6 10.8028 -4.2988 -1.5768 15 6 11.8325 -3.6157 -1.1181 16 16 11.3090 -2.1978 -0.2291 17 6 9.6119 -2.5709 -0.5059 18 7 8.3441 -2.1065 -0.2479 19 1 8.1262 -1.3036 0.2508 20 6 3.4685 -0.9434 -1.3212 21 7 2.0225 -0.6979 -1.1954 22 6 1.1534 -1.1128 -2.1689 23 1 0.1395 -1.3794 -1.9096 24 6 1.5755 -1.1906 -3.4890 25 7 2.6877 -0.5928 -3.8605 26 14 0.5651 -2.1436 -4.7381 27 1 -0.6318 -2.7174 -4.0723 28 1 0.1349 -1.2303 -5.8272 29 1 1.3885 -3.2400 -5.3079 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7639 -0.1655 2.1371 34 1 1.6051 -1.7246 1.2920 35 1 4.0045 0.1529 1.1021 36 1 3.9382 -1.3390 2.0701 37 1 5.9829 -1.1379 0.3202 38 1 7.6802 -4.8061 -1.9730 39 1 10.9144 -5.2059 -2.1523 40 1 12.8651 -3.8933 -1.2702 41 1 3.9919 0.0066 -1.4289 42 1 3.6599 -1.5671 -2.1944 43 1 2.9825 -0.6468 -4.7831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071725084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:26 Heat of formation + Delta-G solvation = 54.921929 kcal Electronic energy + Delta-G solvation = -26171.800303 eV Core-core repulsion = 22537.792513 eV Total energy + Delta-G solvation = -3634.007791 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.35403 -39.21472 -37.55710 -35.46909 -34.51781 -32.82963 -30.91961 -30.53460 -29.88635 -28.49688 -26.05490 -25.03425 -23.37489 -22.74649 -22.20561 -20.54151 -20.13603 -19.70106 -19.26328 -18.96110 -16.71482 -16.46652 -15.69780 -15.28626 -15.13444 -14.98899 -14.66773 -14.07354 -14.04033 -13.81111 -13.63017 -13.51493 -13.37192 -12.89562 -12.74190 -12.41721 -11.99083 -11.90292 -11.79849 -11.47932 -11.14686 -11.00559 -10.90366 -10.72103 -10.58959 -10.41640 -10.27010 -10.00145 -9.91453 -9.59192 -9.54732 -9.49567 -8.68555 -8.43337 -8.40207 -7.79380 -6.61980 -5.74530 -3.19353 0.91045 1.18794 1.38568 1.80844 2.82499 2.99442 3.30977 3.43478 3.51007 3.52175 3.58793 4.52143 4.56631 4.79890 4.93923 5.27347 5.29528 5.33501 5.42586 5.50551 5.54574 5.62542 5.63050 5.92306 5.95672 6.03745 6.08614 6.23358 6.25265 6.34001 6.36632 6.41653 6.44021 6.58716 6.61928 6.67772 6.81962 7.00289 7.04190 7.10918 7.27686 7.69851 7.75676 7.87276 8.42559 8.50158 9.23478 9.87861 10.43615 11.33987 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015792 B = 0.003002 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.583950 B = 9326.428631 C =10524.164726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.086 0.914 8 N -0.718 5.718 9 C 0.582 3.418 10 O -0.512 6.512 11 C 0.004 3.996 12 C -0.074 4.074 13 C -0.162 4.162 14 C -0.067 4.067 15 C -0.225 4.225 16 S 0.125 5.875 17 C -0.013 4.013 18 N -0.525 5.525 19 H 0.419 0.581 20 C 0.168 3.832 21 N -0.583 5.583 22 C -0.254 4.254 23 H 0.071 0.929 24 C 0.007 3.993 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.277 1.277 28 H -0.291 1.291 29 H -0.288 1.288 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.386 0.614 38 H 0.157 0.843 39 H 0.145 0.855 40 H 0.169 0.831 41 H 0.017 0.983 42 H 0.094 0.906 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.105 -1.874 10.963 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.104 0.896 8 N -0.367 5.367 9 C 0.367 3.633 10 O -0.386 6.386 11 C -0.109 4.109 12 C -0.102 4.102 13 C -0.175 4.175 14 C -0.098 4.098 15 C -0.359 4.359 16 S 0.378 5.622 17 C -0.241 4.241 18 N -0.128 5.128 19 H 0.258 0.742 20 C 0.041 3.959 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.089 0.911 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.202 1.202 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.218 0.782 38 H 0.175 0.825 39 H 0.162 0.838 40 H 0.186 0.814 41 H 0.035 0.965 42 H 0.112 0.888 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.241 -1.241 11.176 19.754 hybrid contribution -0.802 -0.746 -0.998 1.482 sum 15.439 -1.987 10.178 18.598 Atomic orbital electron populations 1.21800 0.95935 1.01449 1.00209 1.20492 0.93144 0.93540 0.87035 0.95801 1.22048 0.94092 1.01441 0.98999 1.21686 0.97632 0.99543 0.96604 1.22067 0.76962 1.01249 0.98502 0.89606 1.46000 1.09040 1.26154 1.55556 1.16916 0.84692 0.82250 0.79427 1.90923 1.61094 1.41983 1.44619 1.20306 0.89543 0.94851 1.06213 1.20760 0.89626 0.99077 1.00733 1.19382 0.94098 0.97352 1.06658 1.20350 0.89037 1.00352 1.00015 1.24826 1.02840 1.00212 1.08026 1.83831 0.90313 1.28253 1.59818 1.23514 0.91371 1.00961 1.08281 1.41427 1.02351 1.23042 1.45987 0.74245 1.21111 0.83690 0.96880 0.94222 1.44070 1.02483 1.64796 1.19262 1.19167 0.95034 1.38132 0.85964 0.91143 1.25094 0.97781 0.99260 0.97080 1.70007 1.23998 1.43721 1.16653 0.86261 0.79628 0.79686 0.81426 1.20199 1.21806 1.21430 0.94352 0.91968 0.92755 0.92606 0.91963 0.92326 0.93056 0.78182 0.82508 0.83768 0.81359 0.96510 0.88776 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.95 37.16 0.30 -2.24 16 2 C 0.16 3.32 3.49 -67.60 -0.24 3.08 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.09 5.37 -26.61 -0.14 -2.23 16 5 C -0.12 -1.81 5.35 -26.69 -0.14 -1.95 16 6 C 0.12 2.22 2.61 -67.81 -0.18 2.04 16 7 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 8 N -0.72 -11.38 5.08 -55.05 -0.28 -11.66 16 9 C 0.58 10.34 7.75 -12.93 -0.10 10.24 16 10 O -0.51 -11.38 16.51 5.17 0.09 -11.30 16 11 C 0.00 0.06 6.97 -82.47 -0.57 -0.51 16 12 C -0.07 -1.09 10.58 -38.82 -0.41 -1.50 16 13 C -0.16 -2.10 6.80 -105.46 -0.72 -2.82 16 14 C -0.07 -0.68 10.42 -38.55 -0.40 -1.08 16 15 C -0.23 -1.93 11.03 28.84 0.32 -1.62 16 16 S 0.12 1.14 23.24 -107.50 -2.50 -1.36 16 17 C -0.01 -0.15 8.41 -15.05 -0.13 -0.28 16 18 N -0.52 -6.16 6.08 -7.95 -0.05 -6.21 16 19 H 0.42 3.65 8.14 -40.82 -0.33 3.32 16 20 C 0.17 4.01 4.87 -3.55 -0.02 3.99 16 21 N -0.58 -14.35 3.00 -164.55 -0.49 -14.85 16 22 C -0.25 -6.91 8.58 -15.06 -0.13 -7.03 16 23 H 0.07 1.87 6.23 -52.49 -0.33 1.55 16 24 C 0.01 0.20 4.95 -17.43 -0.09 0.11 16 25 N -0.90 -26.67 11.23 55.49 0.62 -26.05 16 26 Si 0.90 22.40 29.58 -169.99 -5.03 17.37 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.25 7.65 -51.93 -0.40 0.85 16 32 H 0.05 1.03 7.42 -51.92 -0.39 0.64 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.39 4.65 7.67 -40.82 -0.31 4.34 16 38 H 0.16 2.21 8.06 -52.48 -0.42 1.79 16 39 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 2.67 6.16 -51.93 -0.32 2.35 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -33.28 361.50 -10.67 -43.96 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.83 Total: 6.44 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.65 Total: -1.80 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.20 Total: -58.76 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.50 Total: -1.36 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.28 -10.67 -43.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071725084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.878 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds