Wall clock time and date at job start Tue Mar 31 2020 18:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58439 * 2 1 4 4 C 1.53191 * 109.58976 * 120.28310 * 2 1 3 5 5 C 1.53041 * 109.31254 * 174.56464 * 4 2 1 6 6 C 1.53036 * 109.53965 * 298.63797 * 5 4 2 7 7 H 1.09004 * 109.50093 * 301.41194 * 6 5 4 8 8 N 1.46500 * 109.49913 * 181.31441 * 6 5 4 9 9 C 1.34780 * 120.00236 * 154.99532 * 8 6 5 10 10 O 1.21725 * 119.99755 * 0.02562 * 9 8 6 11 11 C 1.46490 * 120.00258 * 179.97438 * 9 8 6 12 12 C 1.36110 * 125.71507 * 180.02562 * 11 9 8 13 13 C 1.42227 * 107.63131 * 180.02562 * 12 11 9 14 14 C 1.45587 * 140.78180 * 180.02562 * 13 12 11 15 15 C 1.31809 * 114.63396 * 179.97438 * 14 13 12 16 16 S 1.75348 * 111.24383 * 359.97438 * 15 14 13 17 17 C 1.38173 * 106.98988 * 359.97438 * 13 12 11 18 18 N 1.37454 * 108.17011 * 359.73979 * 17 13 12 19 19 H 0.97001 * 125.68863 * 180.29417 * 18 17 13 20 20 C 1.53194 * 109.31549 * 61.36447 * 6 5 4 21 21 N 1.46926 * 109.58537 * 239.72184 * 2 1 3 22 22 C 1.36935 * 120.63603 * 6.46146 * 21 2 1 23 23 H 1.08002 * 119.99660 * 330.34114 * 22 21 2 24 24 C 1.38810 * 120.00726 * 150.33821 * 22 21 2 25 25 N 1.31624 * 119.99291 * 344.65073 * 24 22 21 26 26 Si 1.86796 * 120.00435 * 164.64705 * 24 22 21 27 27 H 1.48498 * 109.46975 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47091 * 119.99903 * 26 24 22 29 29 H 1.48491 * 109.47212 * 240.00025 * 26 24 22 30 30 H 1.08993 * 109.47152 * 299.99270 * 1 2 3 31 31 H 1.08996 * 109.47418 * 59.99956 * 1 2 3 32 32 H 1.09007 * 109.46915 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.49969 * 294.51928 * 4 2 1 34 34 H 1.09001 * 109.49441 * 54.61989 * 4 2 1 35 35 H 1.09001 * 109.45767 * 58.65870 * 5 4 2 36 36 H 1.08998 * 109.45857 * 178.61761 * 5 4 2 37 37 H 0.96998 * 120.00464 * 335.00627 * 8 6 5 38 38 H 1.08007 * 126.18581 * 0.02562 * 12 11 9 39 39 H 1.08004 * 122.68133 * 0.02562 * 14 13 12 40 40 H 1.08004 * 124.37859 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.58713 * 65.15122 * 20 6 5 42 42 H 1.08999 * 109.58856 * 185.43562 * 20 6 5 43 43 H 0.97004 * 119.99680 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1728 6 6 3.9604 -1.6607 -0.0600 7 1 3.5038 -2.6488 -0.0020 8 7 5.4181 -1.7973 -0.1124 9 6 5.9745 -2.8392 -0.7614 10 8 5.2658 -3.6666 -1.3045 11 6 7.4321 -2.9755 -0.8142 12 6 8.1145 -3.9764 -1.4348 13 6 9.5030 -3.7322 -1.2466 14 6 10.8028 -4.2988 -1.5768 15 6 11.8325 -3.6157 -1.1181 16 16 11.3090 -2.1978 -0.2291 17 6 9.6119 -2.5709 -0.5059 18 7 8.3441 -2.1065 -0.2479 19 1 8.1262 -1.3036 0.2508 20 6 3.4685 -0.9434 -1.3212 21 7 2.0225 -0.6979 -1.1954 22 6 1.1534 -1.1128 -2.1689 23 1 0.1395 -1.3794 -1.9096 24 6 1.5755 -1.1906 -3.4890 25 7 2.6877 -0.5928 -3.8605 26 14 0.5651 -2.1436 -4.7381 27 1 -0.6318 -2.7174 -4.0723 28 1 0.1349 -1.2303 -5.8272 29 1 1.3885 -3.2400 -5.3079 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7639 -0.1655 2.1371 34 1 1.6051 -1.7246 1.2920 35 1 4.0045 0.1529 1.1021 36 1 3.9382 -1.3390 2.0701 37 1 5.9829 -1.1379 0.3202 38 1 7.6802 -4.8061 -1.9730 39 1 10.9144 -5.2059 -2.1523 40 1 12.8651 -3.8933 -1.2702 41 1 3.9919 0.0066 -1.4289 42 1 3.6599 -1.5671 -2.1944 43 1 2.9825 -0.6468 -4.7831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071725084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:25 Heat of formation + Delta-G solvation = 32.518858 kcal Electronic energy + Delta-G solvation = -26172.771774 eV Core-core repulsion = 22537.792513 eV Total energy + Delta-G solvation = -3634.979261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.40941 -40.65420 -39.16088 -36.37013 -36.07552 -34.67610 -32.42078 -31.76385 -31.57464 -29.55725 -27.73542 -26.78385 -24.56469 -23.99409 -23.58608 -22.07397 -21.38647 -21.10233 -20.32962 -20.15181 -18.36044 -17.84870 -17.37457 -16.81939 -16.37993 -15.98992 -15.78675 -15.58159 -15.46051 -15.29212 -15.14575 -14.95381 -14.58155 -14.48906 -14.13921 -13.78023 -13.49845 -13.11769 -12.81633 -12.80216 -12.73617 -12.62926 -12.56942 -12.29922 -12.14019 -12.00435 -11.77739 -11.70840 -11.51474 -11.21477 -11.12544 -10.59403 -10.56194 -10.23318 -9.29991 -8.66635 -8.62185 -7.87249 -5.33289 0.06299 0.18164 0.41749 1.05904 1.39749 1.44455 1.52239 1.80359 1.92509 2.11518 2.31716 2.49545 3.29793 3.53607 3.71604 3.81738 3.90832 4.00528 4.06264 4.21365 4.36020 4.41980 4.57575 4.61950 4.69020 4.75354 4.76899 4.86040 4.99504 5.04067 5.10715 5.15263 5.18096 5.24583 5.28675 5.38123 5.41966 5.53895 5.59288 5.62074 5.69726 5.75570 6.12832 6.38622 6.47129 7.06683 7.15266 7.87738 8.37756 9.18391 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015792 B = 0.003002 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.583950 B = 9326.428631 C =10524.164726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.132 3.868 7 H 0.056 0.944 8 N -0.703 5.703 9 C 0.582 3.418 10 O -0.568 6.568 11 C -0.014 4.014 12 C -0.089 4.089 13 C -0.183 4.183 14 C -0.089 4.089 15 C -0.210 4.210 16 S 0.168 5.832 17 C -0.021 4.021 18 N -0.513 5.513 19 H 0.433 0.567 20 C 0.179 3.821 21 N -0.603 5.603 22 C -0.249 4.249 23 H 0.075 0.925 24 C -0.053 4.053 25 N -0.934 5.934 26 Si 0.955 3.045 27 H -0.262 1.262 28 H -0.288 1.288 29 H -0.301 1.301 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.408 0.592 38 H 0.148 0.852 39 H 0.162 0.838 40 H 0.204 0.796 41 H -0.001 1.001 42 H 0.040 0.960 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.882 -1.132 13.773 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.040 0.960 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.026 3.974 7 H 0.075 0.925 8 N -0.353 5.353 9 C 0.369 3.631 10 O -0.447 6.447 11 C -0.128 4.128 12 C -0.117 4.117 13 C -0.195 4.195 14 C -0.119 4.119 15 C -0.344 4.344 16 S 0.421 5.579 17 C -0.250 4.250 18 N -0.118 5.118 19 H 0.274 0.726 20 C 0.052 3.948 21 N -0.327 5.327 22 C -0.379 4.379 23 H 0.093 0.907 24 C -0.249 4.249 25 N -0.580 5.580 26 Si 0.784 3.216 27 H -0.186 1.186 28 H -0.215 1.215 29 H -0.228 1.228 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.244 0.756 38 H 0.166 0.834 39 H 0.179 0.821 40 H 0.221 0.779 41 H 0.017 0.983 42 H 0.059 0.941 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 18.022 -0.445 14.059 22.862 hybrid contribution -1.222 -0.941 -1.822 2.387 sum 16.800 -1.386 12.237 20.830 Atomic orbital electron populations 1.21737 0.94755 1.01162 1.01068 1.20819 0.94327 0.93412 0.86700 0.96015 1.21954 0.94411 1.00999 0.98353 1.21662 0.97268 0.99955 0.95660 1.21603 0.78262 0.99594 0.97953 0.92532 1.45746 1.08217 1.26278 1.55099 1.17301 0.85800 0.81689 0.78311 1.90884 1.62744 1.44072 1.46992 1.19751 0.88257 0.96393 1.08362 1.20896 0.91102 0.98967 1.00721 1.19698 0.94218 0.98298 1.07301 1.20536 0.88054 1.01748 1.01566 1.25329 1.04115 0.99057 1.05887 1.83796 0.87117 1.27959 1.59045 1.24049 0.92651 1.00751 1.07535 1.41239 1.01901 1.22976 1.45648 0.72613 1.20792 0.83904 0.95270 0.94806 1.44363 1.02378 1.65708 1.20230 1.19499 0.95473 1.36398 0.86558 0.90706 1.25808 0.99086 1.00921 0.99037 1.70162 1.25802 1.45820 1.16264 0.85370 0.78615 0.78090 0.79485 1.18575 1.21538 1.22826 0.90234 0.94359 0.93547 0.88437 0.92817 0.90686 0.89474 0.75599 0.83418 0.82076 0.77873 0.98322 0.94104 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 7.95 71.98 0.57 -4.05 16 2 C 0.15 5.97 3.49 44.97 0.16 6.13 16 3 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.12 -3.55 5.37 30.67 0.16 -3.39 16 5 C -0.11 -3.05 5.35 30.62 0.16 -2.88 16 6 C 0.13 5.05 2.61 45.07 0.12 5.17 16 7 H 0.06 2.53 7.58 -2.38 -0.02 2.51 16 8 N -0.70 -22.56 5.08 -446.29 -2.27 -24.83 16 9 C 0.58 21.74 7.75 86.39 0.67 22.41 16 10 O -0.57 -27.27 16.51 -4.43 -0.07 -27.35 16 11 C -0.01 -0.43 6.97 39.81 0.28 -0.15 16 12 C -0.09 -2.71 10.58 22.77 0.24 -2.47 16 13 C -0.18 -4.63 6.80 -20.41 -0.14 -4.77 16 14 C -0.09 -1.64 10.42 23.39 0.24 -1.40 16 15 C -0.21 -2.89 11.03 67.05 0.74 -2.15 16 16 S 0.17 2.55 23.24 -56.49 -1.31 1.24 16 17 C -0.02 -0.47 8.41 83.80 0.70 0.24 16 18 N -0.51 -11.65 6.08 -179.05 -1.09 -12.74 16 19 H 0.43 6.87 8.14 -92.71 -0.75 6.12 16 20 C 0.18 8.95 4.87 86.31 0.42 9.38 16 21 N -0.60 -30.40 3.00 -674.50 -2.02 -32.43 16 22 C -0.25 -13.97 8.58 84.03 0.72 -13.25 16 23 H 0.08 4.05 6.23 -2.91 -0.02 4.03 16 24 C -0.05 -3.15 4.95 84.86 0.42 -2.73 16 25 N -0.93 -58.46 11.23 21.65 0.24 -58.22 16 26 Si 0.96 47.92 29.58 68.60 2.03 49.95 16 27 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 28 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 29 H -0.30 -15.58 7.11 99.48 0.71 -14.87 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.04 1.51 7.65 -2.39 -0.02 1.49 16 32 H 0.05 1.70 7.42 -2.38 -0.02 1.68 16 33 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.41 9.37 7.67 -92.71 -0.71 8.66 16 38 H 0.15 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.04 2.47 6.16 -2.39 -0.01 2.46 16 43 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -78.82 361.50 0.58 -78.25 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.41 Total: 20.04 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 5.47 Total: 6.09 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -5.13 Total: -128.22 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.07 Total: -27.35 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.31 Total: 1.24 kcal Total: -78.82 0.58 -78.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071725084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.765 kcal (2) G-P(sol) polarization free energy of solvation -78.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds