Wall clock time and date at job start Tue Mar 31 2020 18:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.69475 * 2 1 4 4 C 1.53188 * 109.58885 * 239.64294 * 2 1 3 5 5 C 1.53039 * 109.31461 * 185.57367 * 4 2 1 6 6 C 1.53042 * 109.53652 * 61.36475 * 5 4 2 7 7 H 1.09000 * 109.52730 * 178.67213 * 6 5 4 8 8 N 1.46496 * 109.50119 * 58.58500 * 6 5 4 9 9 C 1.34777 * 120.00296 * 155.15708 * 8 6 5 10 10 O 1.21724 * 119.99750 * 0.02562 * 9 8 6 11 11 C 1.46493 * 119.99912 * 180.02562 * 9 8 6 12 12 C 1.36110 * 125.71028 * 180.21833 * 11 9 8 13 13 C 1.42232 * 107.62675 * 180.23523 * 12 11 9 14 14 C 1.45591 * 140.77802 * 179.75143 * 13 12 11 15 15 C 1.31818 * 114.63014 * 179.97438 * 14 13 12 16 16 S 1.75351 * 111.24554 * 0.02562 * 15 14 13 17 17 C 1.38169 * 106.99398 * 359.74979 * 13 12 11 18 18 N 1.37461 * 108.16951 * 0.02562 * 17 13 12 19 19 H 0.96996 * 125.68951 * 179.97438 * 18 17 13 20 20 C 1.53193 * 109.31284 * 298.63635 * 6 5 4 21 21 N 1.46924 * 109.58796 * 120.34946 * 2 1 3 22 22 C 1.36938 * 120.63274 * 353.41885 * 21 2 1 23 23 H 1.07998 * 119.99641 * 29.00515 * 22 21 2 24 24 C 1.38814 * 120.00385 * 208.99908 * 22 21 2 25 25 N 1.31613 * 119.99643 * 15.03170 * 24 22 21 26 26 Si 1.86795 * 120.00155 * 195.03203 * 24 22 21 27 27 H 1.48500 * 109.47115 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.47373 * 120.00002 * 26 24 22 29 29 H 1.48498 * 109.47364 * 240.00294 * 26 24 22 30 30 H 1.09000 * 109.47398 * 299.64284 * 1 2 3 31 31 H 1.08994 * 109.47578 * 59.65169 * 1 2 3 32 32 H 1.09004 * 109.47030 * 179.65053 * 1 2 3 33 33 H 1.08997 * 109.49774 * 305.52702 * 4 2 1 34 34 H 1.09003 * 109.49805 * 65.58701 * 4 2 1 35 35 H 1.08999 * 109.46071 * 301.34723 * 5 4 2 36 36 H 1.08992 * 109.46425 * 181.38243 * 5 4 2 37 37 H 0.97003 * 120.00007 * 335.16792 * 8 6 5 38 38 H 1.07997 * 126.19022 * 359.96041 * 12 11 9 39 39 H 1.08000 * 122.68697 * 359.97438 * 14 13 12 40 40 H 1.07999 * 124.37557 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.59121 * 174.42255 * 20 6 5 42 42 H 1.08998 * 109.58971 * 294.70187 * 20 6 5 43 43 H 0.97006 * 120.00023 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 3.5675 -0.8479 -1.1701 6 6 3.9570 -1.6655 0.0636 7 1 5.0412 -1.7698 0.1041 8 7 3.3407 -2.9923 -0.0145 9 6 3.8955 -4.0326 0.6385 10 8 4.9084 -3.8696 1.2935 11 6 3.2795 -5.3594 0.5599 12 6 3.7367 -6.4852 1.1732 13 6 2.8551 -7.5486 0.8341 14 6 2.6640 -8.9730 1.0671 15 6 1.6098 -9.4909 0.4688 16 16 0.7387 -8.2761 -0.4478 17 6 1.8756 -7.0165 0.0177 18 7 2.1356 -5.6767 -0.1464 19 1 1.6062 -5.0579 -0.6732 20 6 3.4651 -0.9467 1.3238 21 7 2.0226 -0.6994 1.1945 22 6 1.1537 -1.1133 2.1687 23 1 0.1361 -1.3679 1.9118 24 6 1.5809 -1.2057 3.4862 25 7 2.7038 -0.6272 3.8559 26 14 0.5621 -2.1509 4.7343 27 1 -0.6460 -2.7034 4.0706 28 1 1.3714 -3.2633 5.2934 29 1 0.1510 -1.2380 5.8311 30 1 -0.3634 0.5083 0.8932 31 1 -0.3634 0.5192 -0.8868 32 1 -0.3633 -1.0277 -0.0063 33 1 1.6031 -1.7253 -1.2912 34 1 1.7655 -0.1672 -2.1368 35 1 4.0061 0.1475 -1.0993 36 1 3.9379 -1.3447 -2.0667 37 1 2.5334 -3.1221 -0.5364 38 1 4.6131 -6.5588 1.7999 39 1 3.3325 -9.5585 1.6808 40 1 1.3200 -10.5292 0.5347 41 1 3.6518 -1.5714 2.1973 42 1 3.9921 0.0011 1.4331 43 1 3.0026 -0.6921 4.7766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071725085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:32 Heat of formation + Delta-G solvation = 56.818529 kcal Electronic energy + Delta-G solvation = -27062.421181 eV Core-core repulsion = 23428.495633 eV Total energy + Delta-G solvation = -3633.925548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.20884 -39.24786 -37.51102 -35.34027 -34.21742 -32.79366 -30.92703 -30.38460 -29.94044 -28.32921 -26.24435 -25.03815 -23.35265 -22.72570 -22.21535 -20.57318 -20.04377 -19.45396 -19.21376 -18.74415 -16.74414 -16.32854 -15.51641 -15.22938 -15.00171 -14.87279 -14.54023 -14.15227 -14.06310 -13.80554 -13.58835 -13.39013 -13.24668 -12.86796 -12.70781 -12.51047 -11.98843 -11.87200 -11.63373 -11.30152 -11.22244 -11.00230 -10.94250 -10.88107 -10.73396 -10.43525 -10.36684 -9.99772 -9.74518 -9.54007 -9.49186 -9.45169 -8.52679 -8.47543 -8.26134 -7.65785 -6.63946 -5.77176 -3.21855 1.04206 1.31763 1.53715 1.92837 2.95524 3.15438 3.37683 3.44755 3.47304 3.50869 3.78532 4.48528 4.67859 4.94756 5.09224 5.24877 5.29856 5.36247 5.41431 5.44533 5.54056 5.63521 5.73716 5.93487 6.02630 6.06609 6.08360 6.22137 6.25776 6.28437 6.37025 6.42902 6.48085 6.52959 6.60494 6.74694 6.81992 6.98635 7.04641 7.18086 7.32492 7.66734 7.81020 7.95160 8.46362 8.60307 9.21023 9.85352 10.40757 11.30662 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011283 B = 0.004303 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.030623 B = 6505.719934 C = 7202.797815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.119 3.881 7 H 0.079 0.921 8 N -0.697 5.697 9 C 0.585 3.415 10 O -0.527 6.527 11 C 0.010 3.990 12 C -0.079 4.079 13 C -0.163 4.163 14 C -0.067 4.067 15 C -0.227 4.227 16 S 0.123 5.877 17 C -0.012 4.012 18 N -0.522 5.522 19 H 0.420 0.580 20 C 0.161 3.839 21 N -0.583 5.583 22 C -0.253 4.253 23 H 0.067 0.933 24 C 0.008 3.992 25 N -0.897 5.897 26 Si 0.894 3.106 27 H -0.279 1.279 28 H -0.288 1.288 29 H -0.290 1.290 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.389 0.611 38 H 0.156 0.844 39 H 0.144 0.856 40 H 0.168 0.832 41 H 0.099 0.901 42 H 0.027 0.973 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 -11.843 -12.227 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.097 0.903 8 N -0.346 5.346 9 C 0.370 3.630 10 O -0.404 6.404 11 C -0.104 4.104 12 C -0.106 4.106 13 C -0.176 4.176 14 C -0.097 4.097 15 C -0.360 4.360 16 S 0.376 5.624 17 C -0.241 4.241 18 N -0.125 5.125 19 H 0.258 0.742 20 C 0.034 3.966 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.085 0.915 24 C -0.191 4.191 25 N -0.541 5.541 26 Si 0.724 3.276 27 H -0.204 1.204 28 H -0.215 1.215 29 H -0.217 1.217 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.223 0.777 38 H 0.173 0.827 39 H 0.161 0.839 40 H 0.185 0.815 41 H 0.117 0.883 42 H 0.045 0.955 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.289 -11.565 -12.505 17.186 hybrid contribution -0.014 -0.181 1.164 1.178 sum -2.303 -11.746 -11.341 16.489 Atomic orbital electron populations 1.21792 0.96124 1.01089 1.00283 1.20462 0.92865 0.93711 0.87166 0.95659 1.22067 0.95177 1.00410 0.99283 1.21700 0.96966 1.00322 0.96733 1.21852 0.97099 0.81266 0.98464 0.90271 1.45749 1.29107 1.08966 1.50798 1.16846 0.84075 0.82082 0.79964 1.90851 1.24673 1.83866 1.40969 1.20303 0.90872 0.95951 1.03230 1.20706 1.00183 0.88679 1.01058 1.19368 0.98952 0.93888 1.05353 1.20333 0.97692 0.91826 0.99884 1.24806 1.01424 1.02854 1.06946 1.83799 1.27965 0.95698 1.54956 1.23482 1.03673 0.89097 1.07843 1.41439 1.22988 1.05982 1.42063 0.74209 1.21208 0.83739 0.97215 0.94455 1.44057 1.02708 1.64791 1.19076 1.19089 0.94620 1.38343 0.86204 0.91487 1.25040 0.97621 0.99466 0.96962 1.69979 1.23084 1.44166 1.16868 0.86362 0.79662 0.79772 0.81807 1.20446 1.21476 1.21692 0.91958 0.94409 0.93133 0.93125 0.92748 0.90853 0.93000 0.77711 0.82673 0.83884 0.81454 0.88308 0.95503 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.94 37.16 0.30 -2.08 16 2 C 0.16 3.13 3.50 -67.60 -0.24 2.90 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -1.97 5.21 -26.61 -0.14 -2.10 16 5 C -0.12 -1.79 5.59 -26.69 -0.15 -1.94 16 6 C 0.12 2.19 2.81 -67.81 -0.19 2.00 16 7 H 0.08 1.50 7.58 -51.93 -0.39 1.10 16 8 N -0.70 -12.09 4.91 -55.05 -0.27 -12.36 16 9 C 0.59 11.16 7.75 -12.93 -0.10 11.06 16 10 O -0.53 -11.85 16.51 5.17 0.09 -11.76 16 11 C 0.01 0.17 6.97 -82.47 -0.57 -0.41 16 12 C -0.08 -1.27 10.58 -38.81 -0.41 -1.68 16 13 C -0.16 -2.37 6.80 -105.46 -0.72 -3.08 16 14 C -0.07 -0.77 10.42 -38.55 -0.40 -1.17 16 15 C -0.23 -2.25 11.03 28.84 0.32 -1.93 16 16 S 0.12 1.32 23.24 -107.50 -2.50 -1.18 16 17 C -0.01 -0.17 8.41 -15.05 -0.13 -0.30 16 18 N -0.52 -7.30 6.08 -7.94 -0.05 -7.35 16 19 H 0.42 4.82 8.14 -40.82 -0.33 4.49 16 20 C 0.16 3.74 4.89 -3.71 -0.02 3.72 16 21 N -0.58 -13.51 2.91 -164.78 -0.48 -13.99 16 22 C -0.25 -6.58 8.60 -15.06 -0.13 -6.71 16 23 H 0.07 1.72 6.21 -52.49 -0.33 1.39 16 24 C 0.01 0.23 4.96 -17.43 -0.09 0.15 16 25 N -0.90 -26.18 11.14 55.49 0.62 -25.57 16 26 Si 0.89 22.17 29.58 -169.99 -5.03 17.14 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H 0.06 1.21 7.62 -51.93 -0.40 0.82 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.89 7.45 -51.93 -0.39 0.50 16 33 H 0.05 0.74 6.40 -51.93 -0.33 0.41 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.39 5.89 5.84 -40.82 -0.24 5.65 16 38 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 39 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 40 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.10 2.74 6.06 -51.93 -0.31 2.43 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -31.87 357.78 -10.56 -42.43 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.66 Total: 8.83 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.67 Total: -1.59 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.18 Total: -59.26 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.50 Total: -1.18 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.87 -10.56 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071725085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.247 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds