Wall clock time and date at job start Tue Mar 31 2020 18:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.69475 * 2 1 4 4 C 1.53188 * 109.58885 * 239.64294 * 2 1 3 5 5 C 1.53039 * 109.31461 * 185.57367 * 4 2 1 6 6 C 1.53042 * 109.53652 * 61.36475 * 5 4 2 7 7 H 1.09000 * 109.52730 * 178.67213 * 6 5 4 8 8 N 1.46496 * 109.50119 * 58.58500 * 6 5 4 9 9 C 1.34777 * 120.00296 * 155.15708 * 8 6 5 10 10 O 1.21724 * 119.99750 * 0.02562 * 9 8 6 11 11 C 1.46493 * 119.99912 * 180.02562 * 9 8 6 12 12 C 1.36110 * 125.71028 * 180.21833 * 11 9 8 13 13 C 1.42232 * 107.62675 * 180.23523 * 12 11 9 14 14 C 1.45591 * 140.77802 * 179.75143 * 13 12 11 15 15 C 1.31818 * 114.63014 * 179.97438 * 14 13 12 16 16 S 1.75351 * 111.24554 * 0.02562 * 15 14 13 17 17 C 1.38169 * 106.99398 * 359.74979 * 13 12 11 18 18 N 1.37461 * 108.16951 * 0.02562 * 17 13 12 19 19 H 0.96996 * 125.68951 * 179.97438 * 18 17 13 20 20 C 1.53193 * 109.31284 * 298.63635 * 6 5 4 21 21 N 1.46924 * 109.58796 * 120.34946 * 2 1 3 22 22 C 1.36938 * 120.63274 * 353.41885 * 21 2 1 23 23 H 1.07998 * 119.99641 * 29.00515 * 22 21 2 24 24 C 1.38814 * 120.00385 * 208.99908 * 22 21 2 25 25 N 1.31613 * 119.99643 * 15.03170 * 24 22 21 26 26 Si 1.86795 * 120.00155 * 195.03203 * 24 22 21 27 27 H 1.48500 * 109.47115 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.47373 * 120.00002 * 26 24 22 29 29 H 1.48498 * 109.47364 * 240.00294 * 26 24 22 30 30 H 1.09000 * 109.47398 * 299.64284 * 1 2 3 31 31 H 1.08994 * 109.47578 * 59.65169 * 1 2 3 32 32 H 1.09004 * 109.47030 * 179.65053 * 1 2 3 33 33 H 1.08997 * 109.49774 * 305.52702 * 4 2 1 34 34 H 1.09003 * 109.49805 * 65.58701 * 4 2 1 35 35 H 1.08999 * 109.46071 * 301.34723 * 5 4 2 36 36 H 1.08992 * 109.46425 * 181.38243 * 5 4 2 37 37 H 0.97003 * 120.00007 * 335.16792 * 8 6 5 38 38 H 1.07997 * 126.19022 * 359.96041 * 12 11 9 39 39 H 1.08000 * 122.68697 * 359.97438 * 14 13 12 40 40 H 1.07999 * 124.37557 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.59121 * 174.42255 * 20 6 5 42 42 H 1.08998 * 109.58971 * 294.70187 * 20 6 5 43 43 H 0.97006 * 120.00023 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 3.5675 -0.8479 -1.1701 6 6 3.9570 -1.6655 0.0636 7 1 5.0412 -1.7698 0.1041 8 7 3.3407 -2.9923 -0.0145 9 6 3.8955 -4.0326 0.6385 10 8 4.9084 -3.8696 1.2935 11 6 3.2795 -5.3594 0.5599 12 6 3.7367 -6.4852 1.1732 13 6 2.8551 -7.5486 0.8341 14 6 2.6640 -8.9730 1.0671 15 6 1.6098 -9.4909 0.4688 16 16 0.7387 -8.2761 -0.4478 17 6 1.8756 -7.0165 0.0177 18 7 2.1356 -5.6767 -0.1464 19 1 1.6062 -5.0579 -0.6732 20 6 3.4651 -0.9467 1.3238 21 7 2.0226 -0.6994 1.1945 22 6 1.1537 -1.1133 2.1687 23 1 0.1361 -1.3679 1.9118 24 6 1.5809 -1.2057 3.4862 25 7 2.7038 -0.6272 3.8559 26 14 0.5621 -2.1509 4.7343 27 1 -0.6460 -2.7034 4.0706 28 1 1.3714 -3.2633 5.2934 29 1 0.1510 -1.2380 5.8311 30 1 -0.3634 0.5083 0.8932 31 1 -0.3634 0.5192 -0.8868 32 1 -0.3633 -1.0277 -0.0063 33 1 1.6031 -1.7253 -1.2912 34 1 1.7655 -0.1672 -2.1368 35 1 4.0061 0.1475 -1.0993 36 1 3.9379 -1.3447 -2.0667 37 1 2.5334 -3.1221 -0.5364 38 1 4.6131 -6.5588 1.7999 39 1 3.3325 -9.5585 1.6808 40 1 1.3200 -10.5292 0.5347 41 1 3.6518 -1.5714 2.1973 42 1 3.9921 0.0011 1.4331 43 1 3.0026 -0.6921 4.7766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071725085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:31 Heat of formation + Delta-G solvation = 36.226635 kcal Electronic energy + Delta-G solvation = -27063.314113 eV Core-core repulsion = 23428.495633 eV Total energy + Delta-G solvation = -3634.818480 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.37363 -40.72137 -39.08222 -36.31947 -35.85284 -34.55447 -32.40025 -31.76635 -31.54215 -29.45878 -27.85486 -26.79470 -24.60195 -23.93150 -23.68361 -22.13207 -21.28668 -20.68461 -20.51760 -20.07040 -18.26703 -17.89797 -17.17732 -16.71238 -16.31063 -16.00109 -15.79151 -15.63650 -15.45838 -15.30404 -15.12209 -14.73642 -14.57906 -14.42653 -14.04913 -13.80405 -13.61972 -13.04311 -12.91493 -12.80469 -12.67232 -12.61575 -12.55540 -12.44553 -12.14995 -12.09524 -11.76695 -11.61943 -11.32736 -11.17810 -11.08024 -10.56810 -10.55344 -10.09033 -9.27717 -8.64962 -8.58748 -7.84750 -5.29598 0.07942 0.23907 0.43289 1.07031 1.35992 1.40461 1.46771 1.84082 2.02539 2.18426 2.40365 2.47093 3.31731 3.60486 3.65347 3.84078 3.97221 4.03099 4.06787 4.15117 4.44484 4.45949 4.62115 4.63263 4.70593 4.75654 4.77836 4.93343 4.99967 5.04181 5.08979 5.14434 5.19430 5.23914 5.29448 5.42842 5.54026 5.56454 5.62076 5.65590 5.70599 5.74181 6.14061 6.42030 6.53519 7.15353 7.16667 7.91010 8.40908 9.20376 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011283 B = 0.004303 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.030623 B = 6505.719934 C = 7202.797815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.015 0.985 4 C -0.119 4.119 5 C -0.111 4.111 6 C 0.128 3.872 7 H 0.070 0.930 8 N -0.685 5.685 9 C 0.581 3.419 10 O -0.573 6.573 11 C -0.013 4.013 12 C -0.092 4.092 13 C -0.182 4.182 14 C -0.088 4.088 15 C -0.210 4.210 16 S 0.163 5.837 17 C -0.024 4.024 18 N -0.514 5.514 19 H 0.430 0.570 20 C 0.170 3.830 21 N -0.595 5.595 22 C -0.235 4.235 23 H 0.076 0.924 24 C -0.052 4.052 25 N -0.934 5.934 26 Si 0.944 3.056 27 H -0.262 1.262 28 H -0.306 1.306 29 H -0.293 1.293 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.402 0.598 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.205 0.795 41 H 0.048 0.952 42 H -0.001 1.001 43 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 -13.815 -15.448 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.033 0.967 4 C -0.158 4.158 5 C -0.149 4.149 6 C 0.022 3.978 7 H 0.088 0.912 8 N -0.335 5.335 9 C 0.368 3.632 10 O -0.453 6.453 11 C -0.126 4.126 12 C -0.121 4.121 13 C -0.195 4.195 14 C -0.118 4.118 15 C -0.343 4.343 16 S 0.416 5.584 17 C -0.253 4.253 18 N -0.118 5.118 19 H 0.270 0.730 20 C 0.043 3.957 21 N -0.319 5.319 22 C -0.365 4.365 23 H 0.094 0.906 24 C -0.247 4.247 25 N -0.582 5.582 26 Si 0.774 3.226 27 H -0.186 1.186 28 H -0.234 1.234 29 H -0.220 1.220 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.239 0.761 38 H 0.167 0.833 39 H 0.180 0.820 40 H 0.222 0.778 41 H 0.067 0.933 42 H 0.017 0.983 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.864 -13.528 -15.799 21.360 hybrid contribution 0.701 0.372 2.100 2.245 sum -4.163 -13.157 -13.698 19.444 Atomic orbital electron populations 1.21726 0.94709 1.01305 1.00857 1.20780 0.94139 0.93301 0.86974 0.96722 1.21964 0.94677 1.00947 0.98227 1.21678 0.97324 1.00046 0.95804 1.21580 0.96555 0.81772 0.97928 0.91202 1.45604 1.29373 1.08132 1.50379 1.17216 0.83595 0.83208 0.79131 1.90816 1.26807 1.84788 1.42938 1.19898 0.92560 0.94840 1.05351 1.20872 1.00534 0.89648 1.01013 1.19716 0.98750 0.95264 1.05746 1.20533 0.99225 0.90560 1.01502 1.25323 0.99968 1.04290 1.04762 1.83758 1.26386 0.94030 1.54232 1.24047 1.04542 0.89198 1.07496 1.41272 1.22233 1.06513 1.41776 0.72956 1.20873 0.84199 0.95478 0.95183 1.44267 1.02190 1.65487 1.19911 1.19413 0.94990 1.35686 0.86450 0.90630 1.25680 0.98778 1.01356 0.98905 1.70144 1.25022 1.46669 1.16316 0.85536 0.78796 0.78122 0.80120 1.18573 1.23358 1.21978 0.94697 0.90540 0.93040 0.92046 0.88944 0.90542 0.89504 0.76133 0.83311 0.81960 0.77783 0.93313 0.98256 0.94824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 7.94 71.98 0.57 -3.60 16 2 C 0.15 5.56 3.50 44.97 0.16 5.71 16 3 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 4 C -0.12 -3.14 5.21 30.67 0.16 -2.98 16 5 C -0.11 -3.03 5.59 30.62 0.17 -2.86 16 6 C 0.13 4.73 2.81 45.07 0.13 4.86 16 7 H 0.07 2.73 7.58 -2.39 -0.02 2.72 16 8 N -0.69 -23.70 4.91 -446.29 -2.19 -25.89 16 9 C 0.58 22.99 7.75 86.39 0.67 23.66 16 10 O -0.57 -27.48 16.51 -4.42 -0.07 -27.55 16 11 C -0.01 -0.44 6.97 39.81 0.28 -0.16 16 12 C -0.09 -3.08 10.58 22.77 0.24 -2.84 16 13 C -0.18 -5.13 6.80 -20.41 -0.14 -5.27 16 14 C -0.09 -1.82 10.42 23.39 0.24 -1.58 16 15 C -0.21 -3.36 11.03 67.04 0.74 -2.62 16 16 S 0.16 2.96 23.24 -56.49 -1.31 1.64 16 17 C -0.02 -0.62 8.41 83.79 0.70 0.08 16 18 N -0.51 -13.85 6.08 -179.04 -1.09 -14.94 16 19 H 0.43 9.12 8.14 -92.71 -0.75 8.36 16 20 C 0.17 8.27 4.89 86.36 0.42 8.69 16 21 N -0.59 -27.81 2.91 -675.24 -1.96 -29.77 16 22 C -0.23 -12.34 8.60 84.03 0.72 -11.62 16 23 H 0.08 3.81 6.21 -2.91 -0.02 3.79 16 24 C -0.05 -2.98 4.96 84.86 0.42 -2.56 16 25 N -0.93 -57.70 11.14 21.65 0.24 -57.46 16 26 Si 0.94 46.95 29.58 68.60 2.03 48.98 16 27 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.31 -15.92 7.11 99.48 0.71 -15.22 16 29 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 30 H 0.03 1.30 7.62 -2.39 -0.02 1.28 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.65 7.45 -2.38 -0.02 1.63 16 33 H 0.06 1.52 6.40 -2.39 -0.02 1.50 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.40 11.51 5.84 -92.71 -0.54 10.96 16 38 H 0.15 4.92 8.06 -2.91 -0.02 4.90 16 39 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 40 H 0.21 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.05 2.89 6.06 -2.39 -0.01 2.87 16 42 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.24 14.87 8.31 -92.70 -0.77 14.10 16 Total: -1.00 -74.79 357.78 0.89 -73.90 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -0.23 Total: 24.18 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 5.49 Total: 6.92 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -5.00 Total: -128.06 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.07 Total: -27.55 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.31 Total: 1.64 kcal Total: -74.79 0.89 -73.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071725085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.122 kcal (2) G-P(sol) polarization free energy of solvation -74.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds