Wall clock time and date at job start Tue Mar 31 2020 18:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.58765 * 2 1 4 4 C 1.53188 * 109.59038 * 239.56639 * 2 1 3 5 5 C 1.53040 * 109.31372 * 185.58081 * 4 2 1 6 6 C 1.53037 * 109.53962 * 61.36357 * 5 4 2 7 7 H 1.08995 * 109.52227 * 58.60765 * 6 5 4 8 8 N 1.46499 * 109.49667 * 178.68302 * 6 5 4 9 9 C 1.34771 * 120.00123 * 204.83700 * 8 6 5 10 10 O 1.21723 * 120.00011 * 0.02562 * 9 8 6 11 11 C 1.46498 * 120.00509 * 179.97438 * 9 8 6 12 12 C 1.36109 * 125.71540 * 180.02562 * 11 9 8 13 13 C 1.42225 * 107.62647 * 180.02562 * 12 11 9 14 14 C 1.45595 * 140.77688 * 179.97438 * 13 12 11 15 15 C 1.31814 * 114.63166 * 179.97438 * 14 13 12 16 16 S 1.75352 * 111.24564 * 0.22360 * 15 14 13 17 17 C 1.38173 * 106.99860 * 359.97438 * 13 12 11 18 18 N 1.37468 * 108.16470 * 0.02562 * 17 13 12 19 19 H 0.96997 * 125.68091 * 180.02562 * 18 17 13 20 20 C 1.53191 * 109.31468 * 298.63542 * 6 5 4 21 21 N 1.46926 * 108.77550 * 54.63126 * 20 6 5 22 22 C 1.36943 * 120.62885 * 126.41076 * 21 20 6 23 23 H 1.08006 * 119.99915 * 209.02246 * 22 21 20 24 24 C 1.38812 * 119.99742 * 29.02371 * 22 21 20 25 25 N 1.31617 * 119.99962 * 15.00997 * 24 22 21 26 26 Si 1.86796 * 119.99767 * 195.01150 * 24 22 21 27 27 H 1.48496 * 109.47279 * 59.99827 * 26 24 22 28 28 H 1.48498 * 109.47295 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46991 * 299.99911 * 26 24 22 30 30 H 1.08999 * 109.47536 * 299.72655 * 1 2 3 31 31 H 1.08998 * 109.46813 * 59.72183 * 1 2 3 32 32 H 1.08999 * 109.47059 * 179.72205 * 1 2 3 33 33 H 1.08999 * 109.49607 * 305.53003 * 4 2 1 34 34 H 1.09000 * 109.49920 * 65.62850 * 4 2 1 35 35 H 1.09001 * 109.45820 * 301.34107 * 5 4 2 36 36 H 1.08997 * 109.45944 * 181.38991 * 5 4 2 37 37 H 0.96996 * 120.00017 * 24.84270 * 8 6 5 38 38 H 1.07998 * 126.18751 * 0.03957 * 12 11 9 39 39 H 1.07999 * 122.68674 * 359.97438 * 14 13 12 40 40 H 1.08005 * 124.37904 * 180.02562 * 15 14 13 41 41 H 1.08996 * 109.58676 * 174.42034 * 20 6 5 42 42 H 1.09002 * 109.58568 * 294.84785 * 20 6 5 43 43 H 0.96996 * 119.99821 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 -1.2444 5 6 3.5675 -0.8496 -1.1688 6 6 3.9569 -1.6656 0.0659 7 1 3.4988 -2.6530 0.0092 8 7 5.4142 -1.8051 0.1202 9 6 5.9677 -2.8452 0.7745 10 8 5.2567 -3.6690 1.3201 11 6 7.4250 -2.9852 0.8284 12 6 8.1046 -3.9852 1.4533 13 6 9.4937 -3.7447 1.2654 14 6 10.7920 -4.3130 1.5990 15 6 11.8236 -3.6344 1.1378 16 16 11.3043 -2.2162 0.2468 17 6 9.6060 -2.5870 0.5195 18 7 8.3393 -2.1241 0.2535 19 1 8.1235 -1.3260 -0.2538 20 6 3.4650 -0.9451 1.3252 21 7 2.0225 -0.6978 1.1955 22 6 1.1536 -1.1097 2.1705 23 1 0.1358 -1.3647 1.9143 24 6 1.5810 -1.1995 3.4882 25 7 2.7042 -0.6209 3.8566 26 14 0.5619 -2.1417 4.7384 27 1 0.4321 -3.5564 4.3061 28 1 1.2307 -2.0889 6.0631 29 1 -0.7872 -1.5294 4.8397 30 1 -0.3634 0.5096 0.8924 31 1 -0.3633 0.5181 -0.8875 32 1 -0.3633 -1.0276 -0.0050 33 1 1.6030 -1.7270 -1.2889 34 1 1.7661 -0.1697 -2.1366 35 1 4.0062 0.1459 -1.0994 36 1 3.9379 -1.3475 -2.0649 37 1 5.9808 -1.1489 -0.3148 38 1 7.6680 -4.8120 1.9939 39 1 10.9012 -5.2182 2.1779 40 1 12.8555 -3.9138 1.2917 41 1 3.6517 -1.5688 2.1994 42 1 3.9903 0.0040 1.4318 43 1 3.0030 -0.6839 4.7772 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071725086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:37 Heat of formation + Delta-G solvation = 55.493851 kcal Electronic energy + Delta-G solvation = -26180.852206 eV Core-core repulsion = 22546.869216 eV Total energy + Delta-G solvation = -3633.982991 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.34854 -39.21120 -37.56364 -35.46466 -34.51320 -32.84098 -30.91942 -30.53041 -29.88172 -28.49377 -26.04906 -25.03353 -23.37084 -22.74111 -22.19668 -20.54136 -20.13081 -19.69442 -19.25965 -18.95636 -16.71028 -16.46603 -15.69129 -15.28240 -15.12945 -14.99039 -14.66384 -14.07419 -14.03187 -13.81023 -13.62866 -13.51234 -13.37374 -12.88669 -12.73178 -12.41098 -11.98838 -11.90110 -11.79528 -11.47417 -11.14466 -11.00322 -10.90096 -10.68768 -10.58613 -10.42671 -10.29153 -10.00910 -9.90747 -9.58816 -9.54114 -9.49810 -8.67937 -8.41671 -8.39867 -7.79031 -6.62468 -5.73584 -3.18481 0.91350 1.19079 1.39087 1.81097 2.82906 2.99840 3.31794 3.44248 3.50214 3.51899 3.59491 4.52636 4.56991 4.80348 4.94386 5.27874 5.29898 5.33783 5.43271 5.50991 5.54913 5.62986 5.63411 5.92782 5.95943 6.04115 6.09021 6.23321 6.25627 6.34335 6.36730 6.42027 6.44652 6.58875 6.62279 6.68413 6.82704 7.00645 7.04304 7.10815 7.29082 7.72099 7.76486 7.86964 8.43438 8.50960 9.24514 9.88738 10.43455 11.34537 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.003007 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.401636 B = 9309.629515 C =10511.949150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.086 0.914 8 N -0.718 5.718 9 C 0.582 3.418 10 O -0.512 6.512 11 C 0.004 3.996 12 C -0.075 4.075 13 C -0.162 4.162 14 C -0.067 4.067 15 C -0.225 4.225 16 S 0.125 5.875 17 C -0.013 4.013 18 N -0.525 5.525 19 H 0.419 0.581 20 C 0.168 3.832 21 N -0.583 5.583 22 C -0.255 4.255 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.901 5.901 26 Si 0.902 3.098 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.386 0.614 38 H 0.157 0.843 39 H 0.145 0.855 40 H 0.169 0.831 41 H 0.097 0.903 42 H 0.016 0.984 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.062 -1.852 -10.869 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.104 0.896 8 N -0.367 5.367 9 C 0.367 3.633 10 O -0.386 6.386 11 C -0.109 4.109 12 C -0.102 4.102 13 C -0.175 4.175 14 C -0.098 4.098 15 C -0.359 4.359 16 S 0.378 5.622 17 C -0.241 4.241 18 N -0.128 5.128 19 H 0.257 0.743 20 C 0.041 3.959 21 N -0.306 5.306 22 C -0.384 4.384 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.545 5.545 26 Si 0.731 3.269 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.210 1.210 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.218 0.782 38 H 0.175 0.825 39 H 0.162 0.838 40 H 0.186 0.814 41 H 0.115 0.885 42 H 0.034 0.966 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.209 -1.215 -11.073 19.668 hybrid contribution -0.829 -0.746 0.975 1.482 sum 15.380 -1.960 -10.097 18.502 Atomic orbital electron populations 1.21802 0.95941 1.01422 1.00243 1.20493 0.93142 0.93527 0.87045 0.95782 1.22044 0.94112 1.01425 0.98971 1.21686 0.97629 0.99544 0.96609 1.22084 0.76967 1.01238 0.98526 0.89636 1.45998 1.09062 1.26427 1.55249 1.16913 0.84696 0.82221 0.79463 1.90922 1.60925 1.42139 1.44620 1.20313 0.89520 0.95057 1.05994 1.20756 0.89643 0.99025 1.00788 1.19383 0.94099 0.97412 1.06590 1.20352 0.89041 1.00369 0.99989 1.24827 1.02830 1.00241 1.08010 1.83831 0.90326 1.28205 1.59867 1.23516 0.91387 1.01047 1.08184 1.41431 1.02349 1.23616 1.45423 0.74251 1.21096 0.83630 0.96872 0.94338 1.44013 1.02577 1.64813 1.19199 1.19103 0.94706 1.38532 0.86097 0.91196 1.25075 0.97718 0.99374 0.97049 1.69975 1.23272 1.44227 1.17008 0.86384 0.79424 0.80377 0.80667 1.20862 1.21649 1.20959 0.91952 0.94347 0.92763 0.91958 0.92625 0.92340 0.93074 0.78203 0.82510 0.83772 0.81364 0.88502 0.96592 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.94 37.16 0.30 -2.24 16 2 C 0.16 3.32 3.50 -67.60 -0.24 3.08 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.09 5.37 -26.61 -0.14 -2.23 16 5 C -0.12 -1.82 5.35 -26.69 -0.14 -1.96 16 6 C 0.12 2.22 2.60 -67.81 -0.18 2.04 16 7 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 8 N -0.72 -11.42 5.08 -55.06 -0.28 -11.70 16 9 C 0.58 10.37 7.75 -12.94 -0.10 10.27 16 10 O -0.51 -11.40 16.51 5.17 0.09 -11.32 16 11 C 0.00 0.07 6.97 -82.47 -0.57 -0.51 16 12 C -0.07 -1.09 10.58 -38.82 -0.41 -1.50 16 13 C -0.16 -2.10 6.80 -105.46 -0.72 -2.82 16 14 C -0.07 -0.68 10.42 -38.54 -0.40 -1.08 16 15 C -0.23 -1.94 11.03 28.84 0.32 -1.62 16 16 S 0.12 1.14 23.24 -107.50 -2.50 -1.35 16 17 C -0.01 -0.15 8.41 -15.05 -0.13 -0.28 16 18 N -0.52 -6.17 6.08 -7.94 -0.05 -6.22 16 19 H 0.42 3.66 8.14 -40.82 -0.33 3.33 16 20 C 0.17 4.01 4.86 -3.71 -0.02 3.99 16 21 N -0.58 -14.36 2.99 -164.77 -0.49 -14.86 16 22 C -0.25 -6.95 8.60 -15.06 -0.13 -7.08 16 23 H 0.07 1.85 6.21 -52.48 -0.33 1.52 16 24 C 0.01 0.19 4.96 -17.43 -0.09 0.11 16 25 N -0.90 -26.68 11.14 55.49 0.62 -26.06 16 26 Si 0.90 22.42 29.58 -169.99 -5.03 17.39 16 27 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 30 H 0.06 1.25 7.62 -51.93 -0.40 0.86 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 1.02 7.45 -51.93 -0.39 0.64 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.39 4.67 7.67 -40.82 -0.31 4.36 16 38 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.10 2.75 6.06 -51.93 -0.31 2.44 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -33.20 361.30 -10.68 -43.88 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.82 Total: 6.63 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.65 Total: -1.83 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.20 Total: -58.85 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.39 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.50 Total: -1.35 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.20 -10.68 -43.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071725086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.374 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds