Wall clock time and date at job start Tue Mar 31 2020 18:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.58765 * 2 1 4 4 C 1.53188 * 109.59038 * 239.56639 * 2 1 3 5 5 C 1.53040 * 109.31372 * 185.58081 * 4 2 1 6 6 C 1.53037 * 109.53962 * 61.36357 * 5 4 2 7 7 H 1.08995 * 109.52227 * 58.60765 * 6 5 4 8 8 N 1.46499 * 109.49667 * 178.68302 * 6 5 4 9 9 C 1.34771 * 120.00123 * 204.83700 * 8 6 5 10 10 O 1.21723 * 120.00011 * 0.02562 * 9 8 6 11 11 C 1.46498 * 120.00509 * 179.97438 * 9 8 6 12 12 C 1.36109 * 125.71540 * 180.02562 * 11 9 8 13 13 C 1.42225 * 107.62647 * 180.02562 * 12 11 9 14 14 C 1.45595 * 140.77688 * 179.97438 * 13 12 11 15 15 C 1.31814 * 114.63166 * 179.97438 * 14 13 12 16 16 S 1.75352 * 111.24564 * 0.22360 * 15 14 13 17 17 C 1.38173 * 106.99860 * 359.97438 * 13 12 11 18 18 N 1.37468 * 108.16470 * 0.02562 * 17 13 12 19 19 H 0.96997 * 125.68091 * 180.02562 * 18 17 13 20 20 C 1.53191 * 109.31468 * 298.63542 * 6 5 4 21 21 N 1.46926 * 108.77550 * 54.63126 * 20 6 5 22 22 C 1.36943 * 120.62885 * 126.41076 * 21 20 6 23 23 H 1.08006 * 119.99915 * 209.02246 * 22 21 20 24 24 C 1.38812 * 119.99742 * 29.02371 * 22 21 20 25 25 N 1.31617 * 119.99962 * 15.00997 * 24 22 21 26 26 Si 1.86796 * 119.99767 * 195.01150 * 24 22 21 27 27 H 1.48496 * 109.47279 * 59.99827 * 26 24 22 28 28 H 1.48498 * 109.47295 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46991 * 299.99911 * 26 24 22 30 30 H 1.08999 * 109.47536 * 299.72655 * 1 2 3 31 31 H 1.08998 * 109.46813 * 59.72183 * 1 2 3 32 32 H 1.08999 * 109.47059 * 179.72205 * 1 2 3 33 33 H 1.08999 * 109.49607 * 305.53003 * 4 2 1 34 34 H 1.09000 * 109.49920 * 65.62850 * 4 2 1 35 35 H 1.09001 * 109.45820 * 301.34107 * 5 4 2 36 36 H 1.08997 * 109.45944 * 181.38991 * 5 4 2 37 37 H 0.96996 * 120.00017 * 24.84270 * 8 6 5 38 38 H 1.07998 * 126.18751 * 0.03957 * 12 11 9 39 39 H 1.07999 * 122.68674 * 359.97438 * 14 13 12 40 40 H 1.08005 * 124.37904 * 180.02562 * 15 14 13 41 41 H 1.08996 * 109.58676 * 174.42034 * 20 6 5 42 42 H 1.09002 * 109.58568 * 294.84785 * 20 6 5 43 43 H 0.96996 * 119.99821 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 -1.2444 5 6 3.5675 -0.8496 -1.1688 6 6 3.9569 -1.6656 0.0659 7 1 3.4988 -2.6530 0.0092 8 7 5.4142 -1.8051 0.1202 9 6 5.9677 -2.8452 0.7745 10 8 5.2567 -3.6690 1.3201 11 6 7.4250 -2.9852 0.8284 12 6 8.1046 -3.9852 1.4533 13 6 9.4937 -3.7447 1.2654 14 6 10.7920 -4.3130 1.5990 15 6 11.8236 -3.6344 1.1378 16 16 11.3043 -2.2162 0.2468 17 6 9.6060 -2.5870 0.5195 18 7 8.3393 -2.1241 0.2535 19 1 8.1235 -1.3260 -0.2538 20 6 3.4650 -0.9451 1.3252 21 7 2.0225 -0.6978 1.1955 22 6 1.1536 -1.1097 2.1705 23 1 0.1358 -1.3647 1.9143 24 6 1.5810 -1.1995 3.4882 25 7 2.7042 -0.6209 3.8566 26 14 0.5619 -2.1417 4.7384 27 1 0.4321 -3.5564 4.3061 28 1 1.2307 -2.0889 6.0631 29 1 -0.7872 -1.5294 4.8397 30 1 -0.3634 0.5096 0.8924 31 1 -0.3633 0.5181 -0.8875 32 1 -0.3633 -1.0276 -0.0050 33 1 1.6030 -1.7270 -1.2889 34 1 1.7661 -0.1697 -2.1366 35 1 4.0062 0.1459 -1.0994 36 1 3.9379 -1.3475 -2.0649 37 1 5.9808 -1.1489 -0.3148 38 1 7.6680 -4.8120 1.9939 39 1 10.9012 -5.2182 2.1779 40 1 12.8555 -3.9138 1.2917 41 1 3.6517 -1.5688 2.1994 42 1 3.9903 0.0040 1.4318 43 1 3.0030 -0.6839 4.7772 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071725086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:36 Heat of formation + Delta-G solvation = 33.171273 kcal Electronic energy + Delta-G solvation = -26181.820186 eV Core-core repulsion = 22546.869216 eV Total energy + Delta-G solvation = -3634.950970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.40612 -40.65501 -39.16941 -36.36742 -36.07312 -34.68614 -32.42139 -31.76122 -31.57260 -29.55575 -27.72927 -26.78377 -24.55971 -23.98752 -23.58351 -22.07612 -21.38216 -21.09982 -20.32682 -20.15000 -18.36068 -17.84625 -17.36950 -16.82041 -16.37656 -15.98904 -15.79602 -15.57253 -15.45697 -15.29027 -15.14444 -14.95299 -14.57945 -14.47705 -14.13353 -13.77857 -13.49979 -13.09684 -12.81428 -12.79151 -12.71934 -12.61840 -12.57577 -12.31283 -12.15055 -12.02810 -11.77652 -11.70754 -11.51436 -11.21385 -11.12572 -10.58942 -10.53918 -10.22913 -9.29852 -8.66682 -8.62232 -7.86221 -5.32302 0.06406 0.18505 0.41894 1.06001 1.40476 1.46404 1.50277 1.80736 1.92880 2.11780 2.32038 2.50190 3.30320 3.54092 3.72184 3.81983 3.91261 4.00729 4.06312 4.21555 4.36268 4.42184 4.57995 4.62131 4.68965 4.75520 4.77045 4.86105 4.99419 5.04001 5.10918 5.15382 5.18283 5.24861 5.29096 5.38768 5.42181 5.53824 5.60139 5.62301 5.69296 5.76971 6.13032 6.38884 6.47637 7.07234 7.16049 7.88975 8.37654 9.18736 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.003007 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.401636 B = 9309.629515 C =10511.949150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.131 3.869 7 H 0.056 0.944 8 N -0.703 5.703 9 C 0.582 3.418 10 O -0.568 6.568 11 C -0.014 4.014 12 C -0.089 4.089 13 C -0.182 4.182 14 C -0.089 4.089 15 C -0.210 4.210 16 S 0.168 5.832 17 C -0.021 4.021 18 N -0.513 5.513 19 H 0.433 0.567 20 C 0.179 3.821 21 N -0.602 5.602 22 C -0.252 4.252 23 H 0.076 0.924 24 C -0.053 4.053 25 N -0.934 5.934 26 Si 0.957 3.043 27 H -0.285 1.285 28 H -0.297 1.297 29 H -0.268 1.268 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.408 0.592 38 H 0.148 0.852 39 H 0.162 0.838 40 H 0.204 0.796 41 H 0.044 0.956 42 H -0.002 1.002 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.855 -1.089 -13.623 22.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.040 0.960 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.025 3.975 7 H 0.074 0.926 8 N -0.353 5.353 9 C 0.369 3.631 10 O -0.447 6.447 11 C -0.127 4.127 12 C -0.117 4.117 13 C -0.195 4.195 14 C -0.119 4.119 15 C -0.344 4.344 16 S 0.421 5.579 17 C -0.250 4.250 18 N -0.118 5.118 19 H 0.274 0.726 20 C 0.052 3.948 21 N -0.327 5.327 22 C -0.382 4.382 23 H 0.093 0.907 24 C -0.248 4.248 25 N -0.580 5.580 26 Si 0.785 3.215 27 H -0.212 1.212 28 H -0.224 1.224 29 H -0.193 1.193 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.244 0.756 38 H 0.166 0.834 39 H 0.179 0.821 40 H 0.221 0.779 41 H 0.062 0.938 42 H 0.016 0.984 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 18.008 -0.397 -13.898 22.751 hybrid contribution -1.257 -0.949 1.780 2.377 sum 16.751 -1.347 -12.118 20.719 Atomic orbital electron populations 1.21738 0.94749 1.01179 1.01070 1.20822 0.94336 0.93403 0.86691 0.95984 1.21951 0.94416 1.00968 0.98363 1.21661 0.97283 0.99960 0.95646 1.21617 0.78269 0.99549 0.98017 0.92611 1.45744 1.08239 1.26548 1.54802 1.17301 0.85809 0.81656 0.78348 1.90884 1.62583 1.44227 1.46990 1.19756 0.88231 0.96610 1.08144 1.20894 0.91120 0.98911 1.00768 1.19699 0.94214 0.98358 1.07236 1.20538 0.88059 1.01763 1.01539 1.25330 1.04103 0.99083 1.05871 1.83796 0.87122 1.27919 1.59095 1.24051 0.92673 1.00828 1.07445 1.41242 1.01895 1.23551 1.45087 0.72619 1.20771 0.83864 0.95273 0.94928 1.44308 1.02460 1.65734 1.20163 1.19456 0.95210 1.36842 0.86705 0.90686 1.25794 0.99020 1.01017 0.99014 1.70143 1.25046 1.46320 1.16532 0.85492 0.78715 0.78981 0.78268 1.21163 1.22377 1.19314 0.94361 0.90234 0.93516 0.92833 0.88445 0.90695 0.89500 0.75617 0.83412 0.82074 0.77873 0.93771 0.98423 0.94688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 7.94 71.98 0.57 -4.05 16 2 C 0.15 5.98 3.50 44.97 0.16 6.14 16 3 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 4 C -0.12 -3.56 5.37 30.67 0.16 -3.39 16 5 C -0.11 -3.06 5.35 30.62 0.16 -2.90 16 6 C 0.13 5.06 2.60 45.07 0.12 5.17 16 7 H 0.06 2.51 7.58 -2.39 -0.02 2.49 16 8 N -0.70 -22.66 5.08 -446.31 -2.27 -24.92 16 9 C 0.58 21.81 7.75 86.40 0.67 22.48 16 10 O -0.57 -27.34 16.51 -4.42 -0.07 -27.41 16 11 C -0.01 -0.42 6.97 39.81 0.28 -0.15 16 12 C -0.09 -2.71 10.58 22.77 0.24 -2.47 16 13 C -0.18 -4.64 6.80 -20.41 -0.14 -4.78 16 14 C -0.09 -1.64 10.42 23.39 0.24 -1.40 16 15 C -0.21 -2.90 11.03 67.04 0.74 -2.16 16 16 S 0.17 2.56 23.24 -56.49 -1.31 1.24 16 17 C -0.02 -0.47 8.41 83.79 0.70 0.23 16 18 N -0.51 -11.69 6.08 -179.03 -1.09 -12.78 16 19 H 0.43 6.90 8.14 -92.71 -0.75 6.14 16 20 C 0.18 8.95 4.86 86.36 0.42 9.37 16 21 N -0.60 -30.44 2.99 -675.22 -2.02 -32.46 16 22 C -0.25 -14.15 8.60 84.03 0.72 -13.43 16 23 H 0.08 4.05 6.21 -2.91 -0.02 4.03 16 24 C -0.05 -3.14 4.96 84.86 0.42 -2.72 16 25 N -0.93 -58.43 11.14 21.65 0.24 -58.18 16 26 Si 0.96 47.92 29.58 68.60 2.03 49.95 16 27 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 28 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 29 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 30 H 0.04 1.51 7.62 -2.39 -0.02 1.50 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.05 1.71 7.45 -2.39 -0.02 1.69 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.41 9.42 7.67 -92.71 -0.71 8.71 16 38 H 0.15 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 40 H 0.20 1.33 8.06 -2.91 -0.02 1.30 16 41 H 0.04 2.68 6.06 -2.39 -0.01 2.67 16 42 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.24 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -78.64 361.30 0.58 -78.07 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -0.41 Total: 20.56 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.48 Total: 5.94 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -5.13 Total: -128.35 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.07 Total: -27.41 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.31 Total: 1.24 kcal Total: -78.64 0.58 -78.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071725086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.240 kcal (2) G-P(sol) polarization free energy of solvation -78.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds