Wall clock time and date at job start Tue Mar 31 2020 18:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.58791 * 2 1 4 4 C 1.53164 * 109.58882 * 239.56387 * 2 1 3 5 5 C 1.53043 * 109.32658 * 185.57161 * 4 2 1 6 6 C 1.53041 * 109.52698 * 61.37828 * 5 4 2 7 7 H 1.08998 * 109.49750 * 58.58472 * 6 5 4 8 8 N 1.46499 * 109.49871 * 178.69129 * 6 5 4 9 9 C 1.34774 * 119.99878 * 204.99770 * 8 6 5 10 10 O 1.21736 * 120.00015 * 359.97438 * 9 8 6 11 11 C 1.46454 * 119.99968 * 179.97438 * 9 8 6 12 12 C 1.37467 * 125.80490 * 179.69137 * 11 9 8 13 13 C 1.40658 * 107.55352 * 179.88102 * 12 11 9 14 14 S 1.76022 * 142.39590 * 180.02562 * 13 12 11 15 15 C 1.75585 * 91.31014 * 180.33600 * 14 13 12 16 16 C 1.32769 * 110.47521 * 0.02562 * 15 14 13 17 17 C 1.38239 * 108.03328 * 0.38256 * 13 12 11 18 18 N 1.37921 * 125.80441 * 359.97438 * 11 9 8 19 19 H 0.96997 * 125.68316 * 359.97438 * 18 11 9 20 20 C 1.53199 * 109.31032 * 298.63954 * 6 5 4 21 21 N 1.46928 * 108.77637 * 54.63481 * 20 6 5 22 22 C 1.36936 * 120.63091 * 126.41172 * 21 20 6 23 23 H 1.08002 * 120.00021 * 209.01107 * 22 21 20 24 24 C 1.38804 * 119.99712 * 29.01738 * 22 21 20 25 25 N 1.31617 * 120.00554 * 15.01566 * 24 22 21 26 26 Si 1.86804 * 119.99695 * 195.02282 * 24 22 21 27 27 H 1.48498 * 109.47214 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47336 * 120.00014 * 26 24 22 29 29 H 1.48506 * 109.46834 * 239.99637 * 26 24 22 30 30 H 1.08999 * 109.46970 * 299.71712 * 1 2 3 31 31 H 1.09005 * 109.47328 * 59.71192 * 1 2 3 32 32 H 1.08994 * 109.47572 * 179.71425 * 1 2 3 33 33 H 1.09005 * 109.47901 * 65.62405 * 4 2 1 34 34 H 1.09001 * 109.50431 * 305.53990 * 4 2 1 35 35 H 1.08999 * 109.46281 * 301.35939 * 5 4 2 36 36 H 1.09002 * 109.45784 * 181.38795 * 5 4 2 37 37 H 0.96995 * 120.00097 * 24.99151 * 8 6 5 38 38 H 1.08001 * 126.21955 * 0.02562 * 12 11 9 39 39 H 1.08001 * 124.76285 * 179.97438 * 15 14 13 40 40 H 1.08001 * 122.16215 * 179.97438 * 16 15 14 41 41 H 1.08994 * 109.58849 * 174.42323 * 20 6 5 42 42 H 1.08999 * 109.58526 * 294.85015 * 20 6 5 43 43 H 0.96998 * 120.00355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2441 5 6 3.5675 -0.8495 -1.1690 6 6 3.9568 -1.6658 0.0655 7 1 3.4981 -2.6529 0.0085 8 7 5.4142 -1.8053 0.1198 9 6 5.9675 -2.8474 0.7712 10 8 5.2564 -3.6724 1.3149 11 6 7.4244 -2.9872 0.8250 12 6 8.1128 -3.9946 1.4582 13 6 9.4856 -3.7560 1.2663 14 16 11.0792 -4.4028 1.6410 15 6 11.8602 -3.0863 0.7808 16 6 10.9530 -2.2593 0.2750 17 6 9.6189 -2.5977 0.5236 18 7 8.3391 -2.1275 0.2536 19 1 8.1249 -1.3281 -0.2522 20 6 3.4650 -0.9454 1.3250 21 7 2.0225 -0.6981 1.1954 22 6 1.1536 -1.1101 2.1704 23 1 0.1358 -1.3648 1.9142 24 6 1.5810 -1.2001 3.4879 25 7 2.7043 -0.6215 3.8565 26 14 0.5620 -2.1427 4.7380 27 1 -0.6470 -2.6949 4.0758 28 1 1.3711 -3.2544 5.2990 29 1 0.1517 -1.2275 5.8332 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0051 33 1 1.7657 -0.1694 -2.1362 34 1 1.6028 -1.7270 -1.2889 35 1 4.0061 0.1459 -1.0995 36 1 3.9375 -1.3476 -2.0652 37 1 5.9808 -1.1479 -0.3132 38 1 7.6784 -4.8205 2.0018 39 1 12.9285 -2.9658 0.6783 40 1 11.2276 -1.3818 -0.2917 41 1 3.6517 -1.5691 2.1991 42 1 3.9902 0.0037 1.4317 43 1 3.0031 -0.6848 4.7771 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071961707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:42 Heat of formation + Delta-G solvation = 54.692692 kcal Electronic energy + Delta-G solvation = -26197.926690 eV Core-core repulsion = 22563.908958 eV Total energy + Delta-G solvation = -3634.017731 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -41.38206 -39.26043 -37.59113 -35.38884 -34.54011 -32.85168 -31.21148 -30.69614 -29.87871 -28.29749 -26.03280 -25.03337 -23.55185 -22.59847 -22.16844 -20.76848 -20.27743 -19.89482 -19.24822 -18.53089 -16.54820 -16.43080 -15.68736 -15.57717 -15.26223 -14.97776 -14.34966 -14.07099 -14.03065 -13.81204 -13.64514 -13.60656 -13.38503 -12.95966 -12.76113 -12.41416 -11.99945 -11.90629 -11.73371 -11.47059 -11.15051 -10.98887 -10.89839 -10.71856 -10.58907 -10.41814 -10.27281 -10.00025 -9.91520 -9.83759 -9.54946 -9.49974 -8.68748 -8.42929 -8.17609 -7.78437 -6.62977 -5.74128 -3.18995 0.66531 1.40574 1.93593 1.95179 2.62032 2.74259 3.34722 3.43888 3.51110 3.52330 3.55471 4.53783 4.60042 4.83055 4.88118 5.18385 5.28111 5.33345 5.37413 5.46305 5.53825 5.61434 5.62577 5.83677 5.86367 5.92506 6.04297 6.22725 6.25449 6.35356 6.36813 6.41422 6.43986 6.53930 6.59840 6.67815 6.82382 7.01896 7.10097 7.16538 7.29133 7.71667 7.75965 7.87145 8.42262 8.50323 9.24061 9.88274 10.42880 11.33990 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.003007 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.483704 B = 9309.739748 C =10577.419184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.086 0.914 8 N -0.717 5.717 9 C 0.581 3.419 10 O -0.510 6.510 11 C 0.022 3.978 12 C -0.078 4.078 13 C -0.215 4.215 14 S 0.127 5.873 15 C -0.194 4.194 16 C -0.112 4.112 17 C 0.058 3.942 18 N -0.541 5.541 19 H 0.418 0.582 20 C 0.167 3.833 21 N -0.583 5.583 22 C -0.253 4.253 23 H 0.071 0.929 24 C 0.006 3.994 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.277 1.277 28 H -0.288 1.288 29 H -0.291 1.291 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.386 0.614 38 H 0.157 0.843 39 H 0.171 0.829 40 H 0.140 0.860 41 H 0.097 0.903 42 H 0.016 0.984 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.050 -1.417 -11.207 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.104 0.896 8 N -0.367 5.367 9 C 0.366 3.634 10 O -0.385 6.385 11 C -0.093 4.093 12 C -0.109 4.109 13 C -0.335 4.335 14 S 0.386 5.614 15 C -0.330 4.330 16 C -0.145 4.145 17 C -0.060 4.060 18 N -0.144 5.144 19 H 0.256 0.744 20 C 0.040 3.960 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.089 0.911 24 C -0.193 4.193 25 N -0.545 5.545 26 Si 0.730 3.270 27 H -0.202 1.202 28 H -0.214 1.214 29 H -0.218 1.218 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.219 0.781 38 H 0.174 0.826 39 H 0.188 0.812 40 H 0.157 0.843 41 H 0.115 0.885 42 H 0.034 0.966 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.993 -3.119 -9.933 19.083 hybrid contribution -0.594 1.653 -0.537 1.837 sum 15.399 -1.467 -10.471 18.680 Atomic orbital electron populations 1.21803 0.95937 1.01433 1.00243 1.20489 0.93148 0.93528 0.87047 0.95772 1.22042 0.94112 1.01430 0.98972 1.21688 0.97626 0.99543 0.96605 1.22090 0.76946 1.01258 0.98535 0.89611 1.45993 1.09075 1.26207 1.55376 1.16904 0.84690 0.82299 0.79555 1.90928 1.60958 1.42082 1.44508 1.20594 0.89513 0.94549 1.04639 1.20433 0.88567 0.99683 1.02194 1.22672 0.98414 1.01997 1.10459 1.83895 0.93414 1.27012 1.57079 1.25192 1.03082 0.99491 1.05248 1.18876 0.88275 1.02409 1.04969 1.18327 0.86447 0.96617 1.04649 1.41971 1.03273 1.23458 1.45679 0.74392 1.21099 0.83637 0.96888 0.94334 1.44031 1.02591 1.64804 1.19213 1.19186 0.94708 1.38298 0.86081 0.91090 1.25077 0.97712 0.99421 0.97061 1.69992 1.23278 1.44356 1.16843 0.86257 0.79656 0.79635 0.81428 1.20211 1.21424 1.21809 0.91954 0.94345 0.92757 0.92624 0.91952 0.92329 0.93062 0.78141 0.82556 0.81177 0.84278 0.88497 0.96575 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.94 37.16 0.30 -2.23 16 2 C 0.16 3.30 3.50 -67.61 -0.24 3.07 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.08 5.37 -26.62 -0.14 -2.22 16 5 C -0.12 -1.80 5.36 -26.69 -0.14 -1.95 16 6 C 0.12 2.20 2.60 -67.81 -0.18 2.02 16 7 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 8 N -0.72 -11.31 5.08 -55.06 -0.28 -11.59 16 9 C 0.58 10.31 7.75 -12.95 -0.10 10.21 16 10 O -0.51 -11.39 16.52 5.16 0.09 -11.30 16 11 C 0.02 0.33 7.01 -82.10 -0.58 -0.25 16 12 C -0.08 -1.17 10.60 -38.95 -0.41 -1.58 16 13 C -0.21 -2.84 7.26 -38.67 -0.28 -3.12 16 14 S 0.13 1.30 23.31 -107.50 -2.51 -1.21 16 15 C -0.19 -1.62 11.13 28.86 0.32 -1.30 16 16 C -0.11 -1.03 10.16 -40.85 -0.42 -1.44 16 17 C 0.06 0.68 7.67 -84.01 -0.64 0.04 16 18 N -0.54 -6.23 6.14 -7.34 -0.05 -6.28 16 19 H 0.42 3.47 8.14 -40.82 -0.33 3.13 16 20 C 0.17 3.99 4.86 -3.71 -0.02 3.97 16 21 N -0.58 -14.33 2.99 -164.79 -0.49 -14.82 16 22 C -0.25 -6.89 8.60 -15.06 -0.13 -7.02 16 23 H 0.07 1.88 6.21 -52.49 -0.33 1.56 16 24 C 0.01 0.17 4.96 -17.43 -0.09 0.09 16 25 N -0.90 -26.65 11.14 55.49 0.62 -26.04 16 26 Si 0.90 22.40 29.58 -169.99 -5.03 17.37 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H 0.06 1.25 7.62 -51.93 -0.40 0.85 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 1.02 7.45 -51.93 -0.39 0.64 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.39 4.60 7.68 -40.82 -0.31 4.29 16 38 H 0.16 2.29 8.06 -52.49 -0.42 1.86 16 39 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.10 2.75 6.06 -51.93 -0.31 2.44 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -33.31 361.06 -10.78 -44.09 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.83 Total: 6.03 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.75 Total: -1.70 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.20 Total: -58.73 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.51 Total: -1.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.31 -10.78 -44.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071961707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.779 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds