Wall clock time and date at job start Tue Mar 31 2020 18:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.58791 * 2 1 4 4 C 1.53164 * 109.58882 * 239.56387 * 2 1 3 5 5 C 1.53043 * 109.32658 * 185.57161 * 4 2 1 6 6 C 1.53041 * 109.52698 * 61.37828 * 5 4 2 7 7 H 1.08998 * 109.49750 * 58.58472 * 6 5 4 8 8 N 1.46499 * 109.49871 * 178.69129 * 6 5 4 9 9 C 1.34774 * 119.99878 * 204.99770 * 8 6 5 10 10 O 1.21736 * 120.00015 * 359.97438 * 9 8 6 11 11 C 1.46454 * 119.99968 * 179.97438 * 9 8 6 12 12 C 1.37467 * 125.80490 * 179.69137 * 11 9 8 13 13 C 1.40658 * 107.55352 * 179.88102 * 12 11 9 14 14 S 1.76022 * 142.39590 * 180.02562 * 13 12 11 15 15 C 1.75585 * 91.31014 * 180.33600 * 14 13 12 16 16 C 1.32769 * 110.47521 * 0.02562 * 15 14 13 17 17 C 1.38239 * 108.03328 * 0.38256 * 13 12 11 18 18 N 1.37921 * 125.80441 * 359.97438 * 11 9 8 19 19 H 0.96997 * 125.68316 * 359.97438 * 18 11 9 20 20 C 1.53199 * 109.31032 * 298.63954 * 6 5 4 21 21 N 1.46928 * 108.77637 * 54.63481 * 20 6 5 22 22 C 1.36936 * 120.63091 * 126.41172 * 21 20 6 23 23 H 1.08002 * 120.00021 * 209.01107 * 22 21 20 24 24 C 1.38804 * 119.99712 * 29.01738 * 22 21 20 25 25 N 1.31617 * 120.00554 * 15.01566 * 24 22 21 26 26 Si 1.86804 * 119.99695 * 195.02282 * 24 22 21 27 27 H 1.48498 * 109.47214 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47336 * 120.00014 * 26 24 22 29 29 H 1.48506 * 109.46834 * 239.99637 * 26 24 22 30 30 H 1.08999 * 109.46970 * 299.71712 * 1 2 3 31 31 H 1.09005 * 109.47328 * 59.71192 * 1 2 3 32 32 H 1.08994 * 109.47572 * 179.71425 * 1 2 3 33 33 H 1.09005 * 109.47901 * 65.62405 * 4 2 1 34 34 H 1.09001 * 109.50431 * 305.53990 * 4 2 1 35 35 H 1.08999 * 109.46281 * 301.35939 * 5 4 2 36 36 H 1.09002 * 109.45784 * 181.38795 * 5 4 2 37 37 H 0.96995 * 120.00097 * 24.99151 * 8 6 5 38 38 H 1.08001 * 126.21955 * 0.02562 * 12 11 9 39 39 H 1.08001 * 124.76285 * 179.97438 * 15 14 13 40 40 H 1.08001 * 122.16215 * 179.97438 * 16 15 14 41 41 H 1.08994 * 109.58849 * 174.42323 * 20 6 5 42 42 H 1.08999 * 109.58526 * 294.85015 * 20 6 5 43 43 H 0.96998 * 120.00355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2441 5 6 3.5675 -0.8495 -1.1690 6 6 3.9568 -1.6658 0.0655 7 1 3.4981 -2.6529 0.0085 8 7 5.4142 -1.8053 0.1198 9 6 5.9675 -2.8474 0.7712 10 8 5.2564 -3.6724 1.3149 11 6 7.4244 -2.9872 0.8250 12 6 8.1128 -3.9946 1.4582 13 6 9.4856 -3.7560 1.2663 14 16 11.0792 -4.4028 1.6410 15 6 11.8602 -3.0863 0.7808 16 6 10.9530 -2.2593 0.2750 17 6 9.6189 -2.5977 0.5236 18 7 8.3391 -2.1275 0.2536 19 1 8.1249 -1.3281 -0.2522 20 6 3.4650 -0.9454 1.3250 21 7 2.0225 -0.6981 1.1954 22 6 1.1536 -1.1101 2.1704 23 1 0.1358 -1.3648 1.9142 24 6 1.5810 -1.2001 3.4879 25 7 2.7043 -0.6215 3.8565 26 14 0.5620 -2.1427 4.7380 27 1 -0.6470 -2.6949 4.0758 28 1 1.3711 -3.2544 5.2990 29 1 0.1517 -1.2275 5.8332 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0051 33 1 1.7657 -0.1694 -2.1362 34 1 1.6028 -1.7270 -1.2889 35 1 4.0061 0.1459 -1.0995 36 1 3.9375 -1.3476 -2.0652 37 1 5.9808 -1.1479 -0.3132 38 1 7.6784 -4.8205 2.0018 39 1 12.9285 -2.9658 0.6783 40 1 11.2276 -1.3818 -0.2917 41 1 3.6517 -1.5691 2.1991 42 1 3.9902 0.0037 1.4317 43 1 3.0031 -0.6848 4.7771 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071961707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:42 Heat of formation + Delta-G solvation = 32.043413 kcal Electronic energy + Delta-G solvation = -26198.908836 eV Core-core repulsion = 22563.908958 eV Total energy + Delta-G solvation = -3634.999878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.42175 -40.69515 -39.18866 -36.27326 -36.11116 -34.69167 -32.51602 -31.93256 -31.74005 -29.38029 -27.70972 -26.76068 -24.61973 -24.02116 -23.49151 -22.13822 -21.44987 -21.33533 -20.61719 -19.64030 -18.36193 -17.63655 -17.31525 -16.82445 -16.40290 -16.35272 -15.81314 -15.56706 -15.28930 -15.17437 -15.03560 -14.95064 -14.69462 -14.48917 -14.13797 -13.88383 -13.50983 -13.11326 -12.83931 -12.80102 -12.73254 -12.59490 -12.53314 -12.29115 -12.13605 -12.00197 -11.75462 -11.70922 -11.51468 -11.21125 -11.12264 -10.79250 -10.56239 -10.24473 -9.12957 -8.67348 -8.63568 -7.86615 -5.32589 -0.26116 0.56995 0.84338 1.16128 1.39619 1.44420 1.52046 1.71658 1.77880 2.06483 2.23011 2.49655 3.30307 3.59267 3.75633 3.82382 3.94019 3.97952 4.06907 4.22014 4.36594 4.37982 4.52863 4.58357 4.69419 4.74808 4.77737 4.86545 4.94342 4.99851 5.04929 5.07520 5.15779 5.24959 5.29622 5.35823 5.40167 5.53609 5.54717 5.60663 5.69672 5.77322 6.28780 6.39939 6.49673 7.07316 7.15899 7.88833 8.37304 9.18498 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.003007 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.483704 B = 9309.739748 C =10577.419184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.055 0.945 8 N -0.701 5.701 9 C 0.580 3.420 10 O -0.569 6.569 11 C -0.001 4.001 12 C -0.091 4.091 13 C -0.254 4.254 14 S 0.126 5.874 15 C -0.166 4.166 16 C -0.126 4.126 17 C 0.073 3.927 18 N -0.526 5.526 19 H 0.433 0.567 20 C 0.179 3.821 21 N -0.603 5.603 22 C -0.248 4.248 23 H 0.076 0.924 24 C -0.054 4.054 25 N -0.934 5.934 26 Si 0.955 3.045 27 H -0.262 1.262 28 H -0.301 1.301 29 H -0.289 1.289 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.409 0.591 38 H 0.143 0.857 39 H 0.211 0.789 40 H 0.174 0.826 41 H 0.043 0.957 42 H -0.001 1.001 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.004 -0.148 -14.364 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.025 3.975 7 H 0.074 0.926 8 N -0.352 5.352 9 C 0.368 3.632 10 O -0.448 6.448 11 C -0.116 4.116 12 C -0.122 4.122 13 C -0.373 4.373 14 S 0.385 5.615 15 C -0.302 4.302 16 C -0.158 4.158 17 C -0.047 4.047 18 N -0.130 5.130 19 H 0.275 0.725 20 C 0.051 3.949 21 N -0.327 5.327 22 C -0.379 4.379 23 H 0.094 0.906 24 C -0.249 4.249 25 N -0.581 5.581 26 Si 0.784 3.216 27 H -0.186 1.186 28 H -0.229 1.229 29 H -0.215 1.215 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.245 0.755 38 H 0.161 0.839 39 H 0.228 0.772 40 H 0.192 0.808 41 H 0.062 0.938 42 H 0.017 0.983 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.933 -1.795 -13.164 22.318 hybrid contribution -1.052 1.266 0.410 1.697 sum 16.881 -0.529 -12.754 21.164 Atomic orbital electron populations 1.21741 0.94773 1.01159 1.01090 1.20819 0.94320 0.93429 0.86678 0.95917 1.21949 0.94451 1.00958 0.98358 1.21662 0.97246 0.99985 0.95619 1.21622 0.78267 0.99560 0.98027 0.92630 1.45724 1.08237 1.26303 1.54904 1.17286 0.85788 0.81731 0.78409 1.90889 1.62643 1.44247 1.46981 1.19978 0.88229 0.96212 1.07148 1.20501 0.90106 0.99516 1.02126 1.22909 0.98692 1.03614 1.12123 1.83938 0.91894 1.28121 1.57547 1.25749 1.04814 0.97251 1.02376 1.19210 0.86570 1.04045 1.06023 1.18868 0.87334 0.95623 1.02923 1.41793 1.02703 1.23364 1.45187 0.72537 1.20774 0.83863 0.95308 0.94919 1.44327 1.02478 1.65726 1.20172 1.19519 0.95167 1.36518 0.86667 0.90641 1.25784 0.99011 1.01106 0.99018 1.70151 1.25049 1.46457 1.16429 0.85375 0.78658 0.78033 0.79521 1.18568 1.22897 1.21547 0.94340 0.90217 0.93566 0.88427 0.92860 0.90614 0.89463 0.75491 0.83927 0.77231 0.80844 0.93842 0.98340 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 7.94 71.98 0.57 -4.04 16 2 C 0.15 5.95 3.50 44.96 0.16 6.10 16 3 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -3.53 5.37 30.66 0.16 -3.37 16 5 C -0.11 -3.01 5.36 30.62 0.16 -2.85 16 6 C 0.13 5.01 2.60 45.07 0.12 5.13 16 7 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 8 N -0.70 -22.37 5.08 -446.31 -2.27 -24.63 16 9 C 0.58 21.77 7.75 86.38 0.67 22.44 16 10 O -0.57 -27.56 16.52 -4.46 -0.07 -27.63 16 11 C 0.00 -0.03 7.01 40.14 0.28 0.25 16 12 C -0.09 -2.89 10.60 22.68 0.24 -2.65 16 13 C -0.25 -6.63 7.26 22.86 0.17 -6.47 16 14 S 0.13 2.38 23.31 -56.49 -1.32 1.06 16 15 C -0.17 -2.08 11.13 66.64 0.74 -1.34 16 16 C -0.13 -1.82 10.16 21.49 0.22 -1.60 16 17 C 0.07 1.59 7.67 38.40 0.29 1.88 16 18 N -0.53 -11.53 6.14 -177.14 -1.09 -12.62 16 19 H 0.43 6.28 8.14 -92.71 -0.75 5.52 16 20 C 0.18 8.90 4.86 86.36 0.42 9.32 16 21 N -0.60 -30.35 2.99 -675.28 -2.02 -32.37 16 22 C -0.25 -13.93 8.60 84.03 0.72 -13.20 16 23 H 0.08 4.08 6.21 -2.91 -0.02 4.06 16 24 C -0.05 -3.20 4.96 84.86 0.42 -2.78 16 25 N -0.93 -58.48 11.14 21.65 0.24 -58.24 16 26 Si 0.96 48.02 29.58 68.60 2.03 50.05 16 27 H -0.26 -12.31 7.11 99.48 0.71 -11.61 16 28 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 29 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 30 H 0.04 1.51 7.62 -2.39 -0.02 1.50 16 31 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.05 1.69 7.45 -2.39 -0.02 1.67 16 33 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.41 9.19 7.68 -92.71 -0.71 8.48 16 38 H 0.14 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 41 H 0.04 2.64 6.06 -2.39 -0.01 2.63 16 42 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.24 15.01 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -80.00 361.06 0.45 -79.55 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -0.41 Total: 17.99 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 5.35 Total: 6.84 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -5.13 Total: -127.86 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.07 Total: -27.63 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.32 Total: 1.06 kcal Total: -80.00 0.45 -79.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071961707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.596 kcal (2) G-P(sol) polarization free energy of solvation -80.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds