Wall clock time and date at job start Tue Mar 31 2020 18:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.70013 * 2 1 4 4 C 1.53196 * 109.58623 * 239.64710 * 2 1 3 5 5 C 1.53033 * 109.31467 * 185.57464 * 4 2 1 6 6 C 1.53040 * 109.53934 * 61.36422 * 5 4 2 7 7 H 1.08998 * 109.52842 * 178.67057 * 6 5 4 8 8 N 1.46504 * 109.49695 * 58.58535 * 6 5 4 9 9 C 1.34774 * 119.99973 * 155.16255 * 8 6 5 10 10 O 1.21732 * 120.00175 * 0.02562 * 9 8 6 11 11 C 1.46452 * 120.00033 * 180.02562 * 9 8 6 12 12 C 1.37460 * 125.80769 * 179.97438 * 11 9 8 13 13 C 1.40660 * 107.55940 * 180.02562 * 12 11 9 14 14 S 1.76019 * 142.39764 * 179.67861 * 13 12 11 15 15 C 1.75591 * 91.30785 * 180.02562 * 14 13 12 16 16 C 1.32771 * 110.47652 * 0.25295 * 15 14 13 17 17 C 1.38248 * 108.03017 * 359.97438 * 13 12 11 18 18 N 1.37921 * 125.80211 * 0.02562 * 11 9 8 19 19 H 0.96993 * 125.68841 * 359.97438 * 18 11 9 20 20 C 1.53195 * 109.31207 * 298.63786 * 6 5 4 21 21 N 1.46917 * 109.59021 * 120.35893 * 2 1 3 22 22 C 1.36941 * 120.63088 * 353.41650 * 21 2 1 23 23 H 1.07991 * 119.99775 * 29.00460 * 22 21 2 24 24 C 1.38817 * 119.99870 * 209.01100 * 22 21 2 25 25 N 1.31618 * 120.00173 * 15.01699 * 24 22 21 26 26 Si 1.86804 * 119.99654 * 195.01825 * 24 22 21 27 27 H 1.48499 * 109.47000 * 89.99737 * 26 24 22 28 28 H 1.48501 * 109.46909 * 209.99851 * 26 24 22 29 29 H 1.48503 * 109.47268 * 329.99872 * 26 24 22 30 30 H 1.09001 * 109.47396 * 299.63805 * 1 2 3 31 31 H 1.08998 * 109.47732 * 59.64600 * 1 2 3 32 32 H 1.09009 * 109.47406 * 179.64444 * 1 2 3 33 33 H 1.09002 * 109.49847 * 305.52886 * 4 2 1 34 34 H 1.09009 * 109.49701 * 65.59047 * 4 2 1 35 35 H 1.09007 * 109.46168 * 301.34593 * 5 4 2 36 36 H 1.09001 * 109.46378 * 181.38738 * 5 4 2 37 37 H 0.96996 * 120.00063 * 335.16403 * 8 6 5 38 38 H 1.08002 * 126.22182 * 359.97438 * 12 11 9 39 39 H 1.08002 * 124.76092 * 180.02562 * 15 14 13 40 40 H 1.08006 * 122.16350 * 179.78128 * 16 15 14 41 41 H 1.09003 * 109.58695 * 174.41835 * 20 6 5 42 42 H 1.09001 * 109.58320 * 294.69957 * 20 6 5 43 43 H 0.97001 * 119.99524 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5674 -0.8479 -1.1703 6 6 3.9569 -1.6656 0.0633 7 1 5.0411 -1.7700 0.1037 8 7 3.3405 -2.9924 -0.0150 9 6 3.8953 -4.0327 0.6380 10 8 4.9083 -3.8699 1.2931 11 6 3.2795 -5.3591 0.5593 12 6 3.7421 -6.4983 1.1739 13 6 2.8643 -7.5460 0.8418 14 16 2.5886 -9.2665 1.0916 15 6 1.1444 -9.2209 0.0938 16 6 0.9369 -7.9932 -0.3672 17 6 1.8733 -7.0318 0.0265 18 7 2.1372 -5.6779 -0.1449 19 1 1.6063 -5.0602 -0.6715 20 6 3.4651 -0.9469 1.3236 21 7 2.0225 -0.6996 1.1943 22 6 1.1537 -1.1136 2.1685 23 1 0.1361 -1.3681 1.9117 24 6 1.5810 -1.2059 3.4860 25 7 2.7040 -0.6276 3.8557 26 14 0.5620 -2.1510 4.7342 27 1 0.9964 -3.5709 4.7545 28 1 0.7525 -1.5557 6.0813 29 1 -0.8730 -2.0777 4.3591 30 1 -0.3634 0.5082 0.8932 31 1 -0.3634 0.5193 -0.8867 32 1 -0.3634 -1.0277 -0.0064 33 1 1.6029 -1.7253 -1.2914 34 1 1.7654 -0.1670 -2.1370 35 1 4.0060 0.1475 -1.0995 36 1 3.9377 -1.3447 -2.0671 37 1 2.5332 -3.1221 -0.5367 38 1 4.6204 -6.5752 1.7977 39 1 0.5153 -10.0728 -0.1183 40 1 0.0996 -7.7526 -1.0057 41 1 3.6518 -1.5718 2.1970 42 1 3.9922 0.0009 1.4329 43 1 3.0026 -0.6924 4.7763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071961708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:48 Heat of formation + Delta-G solvation = 56.099892 kcal Electronic energy + Delta-G solvation = -27086.407201 eV Core-core repulsion = 23452.450490 eV Total energy + Delta-G solvation = -3633.956711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.24078 -39.29104 -37.54313 -35.26012 -34.23853 -32.80253 -31.15588 -30.60795 -29.93744 -28.12975 -26.23157 -25.03650 -23.53433 -22.54306 -22.21177 -20.68817 -20.31742 -19.76426 -18.83413 -18.57871 -16.53989 -16.32379 -15.48434 -15.45762 -15.20927 -14.83472 -14.27802 -14.14806 -14.02047 -13.81747 -13.60331 -13.48396 -13.25945 -12.89097 -12.76331 -12.51859 -11.99251 -11.87520 -11.55507 -11.30347 -11.22532 -10.99797 -10.94514 -10.88662 -10.73418 -10.43884 -10.37823 -10.00209 -9.75474 -9.70593 -9.53933 -9.50123 -8.53672 -8.47220 -8.03466 -7.65527 -6.64398 -5.77215 -3.22145 0.80185 1.52353 2.04825 2.09195 2.75108 2.90124 3.38237 3.44032 3.47059 3.53372 3.75836 4.48433 4.72791 4.96340 5.05155 5.24485 5.29401 5.31028 5.36452 5.44096 5.53111 5.53942 5.73526 5.92288 5.95729 5.98779 6.03062 6.08895 6.25168 6.27983 6.36741 6.43506 6.49512 6.52229 6.59872 6.67819 6.82124 6.98408 7.04227 7.30728 7.33231 7.66386 7.80567 7.94526 8.46224 8.59161 9.20858 9.85112 10.40500 11.30552 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.004234 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.553945 B = 6612.221027 C = 7414.171876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.079 0.921 8 N -0.696 5.696 9 C 0.584 3.416 10 O -0.526 6.526 11 C 0.029 3.971 12 C -0.083 4.083 13 C -0.213 4.213 14 S 0.121 5.879 15 C -0.196 4.196 16 C -0.109 4.109 17 C 0.056 3.944 18 N -0.538 5.538 19 H 0.418 0.582 20 C 0.160 3.840 21 N -0.583 5.583 22 C -0.254 4.254 23 H 0.067 0.933 24 C 0.009 3.991 25 N -0.897 5.897 26 Si 0.894 3.106 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.389 0.611 38 H 0.155 0.845 39 H 0.170 0.830 40 H 0.139 0.861 41 H 0.099 0.901 42 H 0.027 0.973 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 -11.557 -12.522 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.097 0.903 8 N -0.345 5.345 9 C 0.369 3.631 10 O -0.402 6.402 11 C -0.087 4.087 12 C -0.113 4.113 13 C -0.334 4.334 14 S 0.380 5.620 15 C -0.332 4.332 16 C -0.143 4.143 17 C -0.062 4.062 18 N -0.140 5.140 19 H 0.256 0.744 20 C 0.034 3.966 21 N -0.306 5.306 22 C -0.384 4.384 23 H 0.085 0.915 24 C -0.191 4.191 25 N -0.541 5.541 26 Si 0.724 3.276 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.223 0.777 38 H 0.173 0.827 39 H 0.187 0.813 40 H 0.157 0.843 41 H 0.117 0.883 42 H 0.045 0.955 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.707 -12.368 -11.167 16.679 hybrid contribution -2.035 0.918 -0.512 2.290 sum -2.742 -11.451 -11.680 16.585 Atomic orbital electron populations 1.21791 0.96125 1.01080 1.00281 1.20461 0.92861 0.93713 0.87166 0.95662 1.22069 0.95172 1.00416 0.99280 1.21701 0.96972 1.00323 0.96724 1.21860 0.97111 0.81239 0.98487 0.90253 1.45746 1.29104 1.08944 1.50737 1.16835 0.84131 0.82086 0.80067 1.90855 1.24631 1.83891 1.40848 1.20586 0.90490 0.95569 1.02049 1.20380 1.00465 0.88029 1.02476 1.22643 1.03086 0.98391 1.09266 1.83814 1.23546 1.01633 1.52974 1.25152 1.02604 1.00532 1.04896 1.18880 1.00041 0.90942 1.04401 1.18316 0.99018 0.84786 1.04089 1.41981 1.22881 1.07049 1.42098 0.74354 1.21212 0.83748 0.97220 0.94445 1.44049 1.02697 1.64765 1.19097 1.19055 0.94632 1.38461 0.86206 0.91510 1.25044 0.97636 0.99411 0.96959 1.69970 1.23103 1.44037 1.16983 0.86422 0.79705 0.80155 0.81270 1.21375 1.21673 1.20602 0.91961 0.94418 0.93136 0.93105 0.92752 0.90848 0.92992 0.77657 0.82713 0.81257 0.84314 0.88307 0.95486 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.94 37.15 0.30 -2.06 16 2 C 0.16 3.12 3.50 -67.60 -0.24 2.88 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -1.95 5.21 -26.61 -0.14 -2.09 16 5 C -0.12 -1.78 5.58 -26.69 -0.15 -1.93 16 6 C 0.12 2.17 2.81 -67.81 -0.19 1.98 16 7 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 8 N -0.70 -12.00 4.91 -55.06 -0.27 -12.27 16 9 C 0.58 11.12 7.74 -12.95 -0.10 11.02 16 10 O -0.53 -11.83 16.52 5.16 0.09 -11.75 16 11 C 0.03 0.48 7.01 -82.10 -0.58 -0.10 16 12 C -0.08 -1.37 10.60 -38.95 -0.41 -1.78 16 13 C -0.21 -3.16 7.26 -38.66 -0.28 -3.44 16 14 S 0.12 1.40 23.31 -107.50 -2.51 -1.10 16 15 C -0.20 -1.92 11.13 28.86 0.32 -1.60 16 16 C -0.11 -1.19 10.16 -40.85 -0.42 -1.60 16 17 C 0.06 0.77 7.67 -84.00 -0.64 0.13 16 18 N -0.54 -7.41 6.14 -7.34 -0.05 -7.45 16 19 H 0.42 4.63 8.14 -40.82 -0.33 4.30 16 20 C 0.16 3.72 4.89 -3.71 -0.02 3.71 16 21 N -0.58 -13.45 2.91 -164.78 -0.48 -13.92 16 22 C -0.25 -6.58 8.60 -15.06 -0.13 -6.71 16 23 H 0.07 1.70 6.21 -52.49 -0.33 1.37 16 24 C 0.01 0.25 4.96 -17.43 -0.09 0.16 16 25 N -0.90 -26.15 11.14 55.49 0.62 -25.53 16 26 Si 0.89 22.15 29.58 -169.99 -5.03 17.12 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.06 1.21 7.62 -51.93 -0.40 0.81 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.88 7.45 -51.92 -0.39 0.49 16 33 H 0.05 0.73 6.40 -51.93 -0.33 0.40 16 34 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 5.82 5.85 -40.82 -0.24 5.58 16 38 H 0.16 2.46 8.06 -52.49 -0.42 2.03 16 39 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 41 H 0.10 2.74 6.06 -51.93 -0.31 2.42 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 357.54 15.07 5.39 5.39 Total: -1.00 -31.88 357.54 -10.66 -42.54 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.66 Total: 8.42 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -2.76 Total: -1.44 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.18 Total: -59.18 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.51 Total: -1.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.88 -10.66 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071961708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.639 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds