Wall clock time and date at job start Tue Mar 31 2020 18:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.70013 * 2 1 4 4 C 1.53196 * 109.58623 * 239.64710 * 2 1 3 5 5 C 1.53033 * 109.31467 * 185.57464 * 4 2 1 6 6 C 1.53040 * 109.53934 * 61.36422 * 5 4 2 7 7 H 1.08998 * 109.52842 * 178.67057 * 6 5 4 8 8 N 1.46504 * 109.49695 * 58.58535 * 6 5 4 9 9 C 1.34774 * 119.99973 * 155.16255 * 8 6 5 10 10 O 1.21732 * 120.00175 * 0.02562 * 9 8 6 11 11 C 1.46452 * 120.00033 * 180.02562 * 9 8 6 12 12 C 1.37460 * 125.80769 * 179.97438 * 11 9 8 13 13 C 1.40660 * 107.55940 * 180.02562 * 12 11 9 14 14 S 1.76019 * 142.39764 * 179.67861 * 13 12 11 15 15 C 1.75591 * 91.30785 * 180.02562 * 14 13 12 16 16 C 1.32771 * 110.47652 * 0.25295 * 15 14 13 17 17 C 1.38248 * 108.03017 * 359.97438 * 13 12 11 18 18 N 1.37921 * 125.80211 * 0.02562 * 11 9 8 19 19 H 0.96993 * 125.68841 * 359.97438 * 18 11 9 20 20 C 1.53195 * 109.31207 * 298.63786 * 6 5 4 21 21 N 1.46917 * 109.59021 * 120.35893 * 2 1 3 22 22 C 1.36941 * 120.63088 * 353.41650 * 21 2 1 23 23 H 1.07991 * 119.99775 * 29.00460 * 22 21 2 24 24 C 1.38817 * 119.99870 * 209.01100 * 22 21 2 25 25 N 1.31618 * 120.00173 * 15.01699 * 24 22 21 26 26 Si 1.86804 * 119.99654 * 195.01825 * 24 22 21 27 27 H 1.48499 * 109.47000 * 89.99737 * 26 24 22 28 28 H 1.48501 * 109.46909 * 209.99851 * 26 24 22 29 29 H 1.48503 * 109.47268 * 329.99872 * 26 24 22 30 30 H 1.09001 * 109.47396 * 299.63805 * 1 2 3 31 31 H 1.08998 * 109.47732 * 59.64600 * 1 2 3 32 32 H 1.09009 * 109.47406 * 179.64444 * 1 2 3 33 33 H 1.09002 * 109.49847 * 305.52886 * 4 2 1 34 34 H 1.09009 * 109.49701 * 65.59047 * 4 2 1 35 35 H 1.09007 * 109.46168 * 301.34593 * 5 4 2 36 36 H 1.09001 * 109.46378 * 181.38738 * 5 4 2 37 37 H 0.96996 * 120.00063 * 335.16403 * 8 6 5 38 38 H 1.08002 * 126.22182 * 359.97438 * 12 11 9 39 39 H 1.08002 * 124.76092 * 180.02562 * 15 14 13 40 40 H 1.08006 * 122.16350 * 179.78128 * 16 15 14 41 41 H 1.09003 * 109.58695 * 174.41835 * 20 6 5 42 42 H 1.09001 * 109.58320 * 294.69957 * 20 6 5 43 43 H 0.97001 * 119.99524 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5674 -0.8479 -1.1703 6 6 3.9569 -1.6656 0.0633 7 1 5.0411 -1.7700 0.1037 8 7 3.3405 -2.9924 -0.0150 9 6 3.8953 -4.0327 0.6380 10 8 4.9083 -3.8699 1.2931 11 6 3.2795 -5.3591 0.5593 12 6 3.7421 -6.4983 1.1739 13 6 2.8643 -7.5460 0.8418 14 16 2.5886 -9.2665 1.0916 15 6 1.1444 -9.2209 0.0938 16 6 0.9369 -7.9932 -0.3672 17 6 1.8733 -7.0318 0.0265 18 7 2.1372 -5.6779 -0.1449 19 1 1.6063 -5.0602 -0.6715 20 6 3.4651 -0.9469 1.3236 21 7 2.0225 -0.6996 1.1943 22 6 1.1537 -1.1136 2.1685 23 1 0.1361 -1.3681 1.9117 24 6 1.5810 -1.2059 3.4860 25 7 2.7040 -0.6276 3.8557 26 14 0.5620 -2.1510 4.7342 27 1 0.9964 -3.5709 4.7545 28 1 0.7525 -1.5557 6.0813 29 1 -0.8730 -2.0777 4.3591 30 1 -0.3634 0.5082 0.8932 31 1 -0.3634 0.5193 -0.8867 32 1 -0.3634 -1.0277 -0.0064 33 1 1.6029 -1.7253 -1.2914 34 1 1.7654 -0.1670 -2.1370 35 1 4.0060 0.1475 -1.0995 36 1 3.9377 -1.3447 -2.0671 37 1 2.5332 -3.1221 -0.5367 38 1 4.6204 -6.5752 1.7977 39 1 0.5153 -10.0728 -0.1183 40 1 0.0996 -7.7526 -1.0057 41 1 3.6518 -1.5718 2.1970 42 1 3.9922 0.0009 1.4329 43 1 3.0026 -0.6924 4.7763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071961708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:47 Heat of formation + Delta-G solvation = 35.284590 kcal Electronic energy + Delta-G solvation = -27087.309820 eV Core-core repulsion = 23452.450490 eV Total energy + Delta-G solvation = -3634.859330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.39113 -40.75852 -39.10360 -36.23778 -35.87500 -34.55549 -32.50690 -31.88379 -31.74650 -29.27898 -27.83278 -26.77603 -24.66560 -23.93309 -23.60729 -22.15955 -21.54723 -20.99318 -20.41767 -19.74384 -18.23829 -17.68266 -17.12606 -16.71285 -16.39393 -16.28600 -15.84810 -15.62516 -15.30125 -15.16494 -15.01638 -14.74564 -14.68076 -14.42691 -14.05326 -13.88356 -13.64631 -13.04642 -12.88819 -12.83005 -12.67190 -12.60130 -12.52417 -12.43464 -12.14103 -12.09535 -11.76350 -11.61016 -11.32968 -11.17694 -11.07649 -10.77554 -10.55280 -10.10681 -9.10226 -8.65805 -8.59315 -7.84278 -5.29270 -0.22887 0.57809 0.87839 1.16000 1.36567 1.40996 1.46179 1.76444 1.79540 2.16002 2.34891 2.47367 3.32051 3.61079 3.75006 3.83482 3.99167 4.00348 4.07343 4.15815 4.40013 4.46436 4.53791 4.62825 4.70808 4.75662 4.78541 4.93926 4.94834 5.03009 5.05257 5.07638 5.09858 5.23802 5.29657 5.42047 5.51414 5.55635 5.58910 5.63274 5.70952 5.74673 6.30948 6.42304 6.55073 7.15250 7.16977 7.91434 8.41308 9.20674 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.004234 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.553945 B = 6612.221027 C = 7414.171876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.015 0.985 4 C -0.119 4.119 5 C -0.111 4.111 6 C 0.127 3.873 7 H 0.069 0.931 8 N -0.683 5.683 9 C 0.580 3.420 10 O -0.574 6.574 11 C 0.000 4.000 12 C -0.096 4.096 13 C -0.253 4.253 14 S 0.127 5.873 15 C -0.167 4.167 16 C -0.126 4.126 17 C 0.068 3.932 18 N -0.527 5.527 19 H 0.431 0.569 20 C 0.170 3.830 21 N -0.594 5.594 22 C -0.235 4.235 23 H 0.077 0.923 24 C -0.052 4.052 25 N -0.935 5.935 26 Si 0.945 3.055 27 H -0.301 1.301 28 H -0.300 1.300 29 H -0.260 1.260 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.403 0.597 38 H 0.144 0.856 39 H 0.212 0.788 40 H 0.173 0.827 41 H 0.048 0.952 42 H -0.001 1.001 43 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 -13.386 -16.126 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.032 0.968 4 C -0.158 4.158 5 C -0.148 4.148 6 C 0.022 3.978 7 H 0.087 0.913 8 N -0.333 5.333 9 C 0.367 3.633 10 O -0.454 6.454 11 C -0.115 4.115 12 C -0.127 4.127 13 C -0.373 4.373 14 S 0.386 5.614 15 C -0.303 4.303 16 C -0.159 4.159 17 C -0.052 4.052 18 N -0.131 5.131 19 H 0.271 0.729 20 C 0.042 3.958 21 N -0.318 5.318 22 C -0.365 4.365 23 H 0.095 0.905 24 C -0.247 4.247 25 N -0.582 5.582 26 Si 0.775 3.225 27 H -0.229 1.229 28 H -0.227 1.227 29 H -0.185 1.185 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.240 0.760 38 H 0.162 0.838 39 H 0.228 0.772 40 H 0.190 0.810 41 H 0.066 0.934 42 H 0.017 0.983 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.806 -14.171 -14.841 20.870 hybrid contribution -1.141 1.390 0.558 1.883 sum -4.947 -12.781 -14.282 19.794 Atomic orbital electron populations 1.21726 0.94670 1.01360 1.00833 1.20783 0.94165 0.93282 0.86968 0.96774 1.21966 0.94617 1.01009 0.98200 1.21680 0.97385 1.00012 0.95771 1.21585 0.96540 0.81762 0.97963 0.91256 1.45586 1.29376 1.08058 1.50303 1.17200 0.83624 0.83224 0.79211 1.90818 1.26848 1.84827 1.42912 1.20127 0.92386 0.94409 1.04529 1.20479 1.00657 0.89183 1.02345 1.22916 1.03536 1.00113 1.10700 1.83836 1.24849 0.99236 1.53504 1.25732 1.01074 1.01432 1.02017 1.19210 1.00669 0.90339 1.05637 1.18890 0.98893 0.84686 1.02696 1.41828 1.22001 1.07579 1.41673 0.72874 1.20874 0.84244 0.95465 0.95173 1.44261 1.02153 1.65462 1.19945 1.19393 0.95039 1.35686 0.86425 0.90539 1.25687 0.98801 1.01323 0.98925 1.70139 1.25065 1.46618 1.16356 0.85590 0.79598 0.78036 0.79285 1.22885 1.22656 1.18476 0.94756 0.90536 0.92937 0.91920 0.88923 0.90581 0.89467 0.76013 0.83802 0.77162 0.80998 0.93360 0.98271 0.94849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 7.94 71.98 0.57 -3.54 16 2 C 0.15 5.50 3.50 44.98 0.16 5.66 16 3 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 4 C -0.12 -3.09 5.21 30.67 0.16 -2.93 16 5 C -0.11 -3.00 5.58 30.62 0.17 -2.83 16 6 C 0.13 4.71 2.81 45.07 0.13 4.84 16 7 H 0.07 2.71 7.58 -2.39 -0.02 2.69 16 8 N -0.68 -23.48 4.91 -446.32 -2.19 -25.68 16 9 C 0.58 23.03 7.74 86.38 0.67 23.70 16 10 O -0.57 -27.73 16.52 -4.45 -0.07 -27.81 16 11 C 0.00 0.02 7.01 40.14 0.28 0.30 16 12 C -0.10 -3.29 10.60 22.68 0.24 -3.05 16 13 C -0.25 -7.35 7.26 22.86 0.17 -7.19 16 14 S 0.13 2.69 23.31 -56.49 -1.32 1.37 16 15 C -0.17 -2.51 11.13 66.64 0.74 -1.77 16 16 C -0.13 -2.21 10.16 21.49 0.22 -1.99 16 17 C 0.07 1.73 7.67 38.40 0.29 2.03 16 18 N -0.53 -13.83 6.14 -177.14 -1.09 -14.92 16 19 H 0.43 8.55 8.14 -92.71 -0.75 7.79 16 20 C 0.17 8.24 4.89 86.36 0.42 8.67 16 21 N -0.59 -27.65 2.91 -675.24 -1.96 -29.62 16 22 C -0.23 -12.28 8.60 84.03 0.72 -11.56 16 23 H 0.08 3.82 6.21 -2.92 -0.02 3.80 16 24 C -0.05 -2.98 4.96 84.86 0.42 -2.56 16 25 N -0.93 -57.75 11.14 21.65 0.24 -57.51 16 26 Si 0.94 46.94 29.58 68.60 2.03 48.96 16 27 H -0.30 -15.46 7.11 99.48 0.71 -14.76 16 28 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 29 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 30 H 0.03 1.27 7.62 -2.39 -0.02 1.25 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 1.65 7.45 -2.38 -0.02 1.63 16 33 H 0.06 1.51 6.40 -2.39 -0.02 1.49 16 34 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.40 11.32 5.85 -92.71 -0.54 10.78 16 38 H 0.14 5.02 8.06 -2.91 -0.02 5.00 16 39 H 0.21 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.05 2.86 6.06 -2.39 -0.01 2.84 16 42 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -75.90 357.54 0.76 -75.14 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.24 Total: 22.28 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.36 Total: 7.77 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -5.00 Total: -127.72 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.07 Total: -27.81 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.32 Total: 1.37 kcal Total: -75.90 0.76 -75.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071961708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.424 kcal (2) G-P(sol) polarization free energy of solvation -75.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds