Wall clock time and date at job start Tue Mar 31 2020 18:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.58260 * 2 1 4 4 C 1.53191 * 109.58773 * 120.27721 * 2 1 3 5 5 C 1.53042 * 109.31437 * 174.56860 * 4 2 1 6 6 C 1.53047 * 109.53404 * 298.63683 * 5 4 2 7 7 H 1.09001 * 109.49718 * 301.41172 * 6 5 4 8 8 N 1.46501 * 109.49459 * 181.31340 * 6 5 4 9 9 C 1.34781 * 119.99754 * 154.99776 * 8 6 5 10 10 O 1.21728 * 119.99661 * 0.02562 * 9 8 6 11 11 C 1.46451 * 119.99737 * 180.02562 * 9 8 6 12 12 C 1.37466 * 125.80467 * 179.69384 * 11 9 8 13 13 C 1.40652 * 107.55623 * 179.84298 * 12 11 9 14 14 S 1.76024 * 142.39603 * 180.02562 * 13 12 11 15 15 C 1.75594 * 91.30926 * 180.37602 * 14 13 12 16 16 C 1.32773 * 110.47804 * 0.02562 * 15 14 13 17 17 C 1.38244 * 108.03443 * 0.42173 * 13 12 11 18 18 N 1.37920 * 125.80902 * 0.02562 * 11 9 8 19 19 H 0.97001 * 125.68242 * 359.97438 * 18 11 9 20 20 C 1.53189 * 109.31332 * 61.36475 * 6 5 4 21 21 N 1.46920 * 109.58934 * 239.71289 * 2 1 3 22 22 C 1.36940 * 120.63146 * 6.46825 * 21 2 1 23 23 H 1.08008 * 119.99359 * 331.06885 * 22 21 2 24 24 C 1.38810 * 120.00700 * 151.07078 * 22 21 2 25 25 N 1.31615 * 120.00193 * 160.80709 * 24 22 21 26 26 Si 1.86806 * 119.99569 * 340.80720 * 24 22 21 27 27 H 1.48500 * 109.47035 * 92.35132 * 26 24 22 28 28 H 1.48496 * 109.46873 * 212.35381 * 26 24 22 29 29 H 1.48507 * 109.47127 * 332.35620 * 26 24 22 30 30 H 1.09002 * 109.47226 * 299.99892 * 1 2 3 31 31 H 1.09003 * 109.47690 * 60.00161 * 1 2 3 32 32 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.49827 * 294.52087 * 4 2 1 34 34 H 1.09002 * 109.49658 * 54.61666 * 4 2 1 35 35 H 1.08997 * 109.45974 * 58.65498 * 5 4 2 36 36 H 1.08998 * 109.46199 * 178.61865 * 5 4 2 37 37 H 0.96999 * 120.00178 * 335.00896 * 8 6 5 38 38 H 1.08002 * 126.22013 * 359.97438 * 12 11 9 39 39 H 1.08000 * 124.76180 * 179.97438 * 15 14 13 40 40 H 1.07996 * 122.16294 * 180.02562 * 16 15 14 41 41 H 1.09005 * 109.58795 * 65.15337 * 20 6 5 42 42 H 1.08994 * 109.58758 * 185.43527 * 20 6 5 43 43 H 0.97005 * 119.99195 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8431 1.1730 6 6 3.9604 -1.6607 -0.0598 7 1 3.5037 -2.6487 -0.0016 8 7 5.4181 -1.7973 -0.1120 9 6 5.9744 -2.8393 -0.7610 10 8 5.2656 -3.6667 -1.3041 11 6 7.4316 -2.9762 -0.8128 12 6 8.1227 -3.9896 -1.4332 13 6 9.4949 -3.7418 -1.2496 14 16 11.0903 -4.3862 -1.6209 15 6 11.8676 -3.0657 -0.7634 16 6 10.9581 -2.2397 -0.2598 17 6 9.6250 -2.5818 -0.5090 18 7 8.3439 -2.1136 -0.2418 19 1 8.1274 -1.3133 0.2618 20 6 3.4685 -0.9436 -1.3209 21 7 2.0225 -0.6981 -1.1952 22 6 1.1534 -1.1130 -2.1688 23 1 0.1360 -1.3682 -1.9112 24 6 1.5799 -1.2055 -3.4865 25 7 0.9061 -1.9397 -4.3462 26 14 3.1101 -0.2878 -4.0395 27 1 4.2939 -1.1746 -3.9072 28 1 2.9553 0.1229 -5.4581 29 1 3.2976 0.9176 -3.1926 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7637 -0.1652 2.1372 34 1 1.6049 -1.7245 1.2923 35 1 4.0045 0.1530 1.1022 36 1 3.9381 -1.3388 2.0704 37 1 5.9828 -1.1379 0.3206 38 1 7.6905 -4.8233 -1.9667 39 1 12.9355 -2.9429 -0.6594 40 1 11.2302 -1.3603 0.3050 41 1 3.9920 0.0065 -1.4288 42 1 3.6599 -1.5673 -2.1941 43 1 1.2040 -2.0040 -5.2672 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071961709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:53 Heat of formation + Delta-G solvation = 60.408432 kcal Electronic energy + Delta-G solvation = -26329.512946 eV Core-core repulsion = 22695.743068 eV Total energy + Delta-G solvation = -3633.769878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -41.49795 -39.49547 -37.85664 -35.48621 -34.74003 -32.85703 -31.34289 -30.83678 -30.69713 -28.43125 -26.24391 -24.97970 -23.67877 -22.93792 -22.38237 -20.93781 -20.45916 -20.02550 -19.35334 -18.67565 -16.68304 -16.59869 -15.99944 -15.68098 -15.36531 -15.10684 -14.63048 -14.41885 -14.18227 -14.06254 -13.76784 -13.68666 -13.51138 -13.07749 -13.02809 -12.45758 -12.17841 -12.08591 -11.81919 -11.74139 -11.50044 -11.30618 -11.06130 -10.84610 -10.75839 -10.40927 -10.29992 -10.13773 -9.93290 -9.90313 -9.71987 -9.40967 -8.98521 -8.53576 -8.27655 -7.87632 -6.93376 -5.90551 -3.28854 0.56352 1.32255 1.83230 1.85579 2.52869 2.62834 3.15973 3.37651 3.39778 3.49110 3.52064 4.50930 4.57487 4.68479 4.75521 4.93232 5.09062 5.10173 5.17398 5.29213 5.39536 5.47490 5.53275 5.68721 5.73317 5.77176 5.85490 5.95013 6.05950 6.18156 6.20928 6.26374 6.30805 6.39717 6.43686 6.47669 6.51553 6.61805 6.77126 6.97104 7.05631 7.07500 7.54461 7.99089 8.24442 8.39215 8.95851 9.76171 10.11704 11.24989 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.003154 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.950742 B = 8874.689728 C = 9811.384057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.029 0.971 4 C -0.128 4.128 5 C -0.117 4.117 6 C 0.126 3.874 7 H 0.096 0.904 8 N -0.723 5.723 9 C 0.579 3.421 10 O -0.506 6.506 11 C 0.017 3.983 12 C -0.074 4.074 13 C -0.217 4.217 14 S 0.131 5.869 15 C -0.192 4.192 16 C -0.113 4.113 17 C 0.060 3.940 18 N -0.542 5.542 19 H 0.418 0.582 20 C 0.120 3.880 21 N -0.596 5.596 22 C -0.262 4.262 23 H 0.093 0.907 24 C 0.030 3.970 25 N -0.905 5.905 26 Si 0.878 3.122 27 H -0.287 1.287 28 H -0.303 1.303 29 H -0.273 1.273 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.388 0.612 38 H 0.158 0.842 39 H 0.172 0.828 40 H 0.140 0.860 41 H 0.023 0.977 42 H 0.080 0.920 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.837 1.453 12.979 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.062 3.938 3 H 0.047 0.953 4 C -0.167 4.167 5 C -0.155 4.155 6 C 0.021 3.979 7 H 0.114 0.886 8 N -0.373 5.373 9 C 0.364 3.636 10 O -0.379 6.379 11 C -0.098 4.098 12 C -0.105 4.105 13 C -0.337 4.337 14 S 0.390 5.610 15 C -0.328 4.328 16 C -0.147 4.147 17 C -0.058 4.058 18 N -0.145 5.145 19 H 0.256 0.744 20 C -0.007 4.007 21 N -0.321 5.321 22 C -0.390 4.390 23 H 0.111 0.889 24 C -0.169 4.169 25 N -0.547 5.547 26 Si 0.708 3.292 27 H -0.215 1.215 28 H -0.231 1.231 29 H -0.198 1.198 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.221 0.779 38 H 0.176 0.824 39 H 0.189 0.811 40 H 0.158 0.842 41 H 0.041 0.959 42 H 0.098 0.902 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 19.679 -0.322 11.695 22.894 hybrid contribution 0.732 2.538 0.774 2.752 sum 20.411 2.216 12.469 24.021 Atomic orbital electron populations 1.21813 0.95138 1.02051 1.00458 1.20510 0.93813 0.93321 0.86121 0.95298 1.22055 0.93844 1.01883 0.98940 1.21694 0.97836 0.99470 0.96478 1.21862 0.77120 1.01634 0.97287 0.88603 1.46049 1.08918 1.26470 1.55902 1.16973 0.84873 0.82241 0.79519 1.90957 1.61115 1.41635 1.44225 1.20521 0.89382 0.94616 1.05306 1.20461 0.88595 0.99370 1.02061 1.22688 0.98465 1.01923 1.10624 1.83939 0.93260 1.26694 1.57084 1.25222 1.03141 0.99413 1.05042 1.18875 0.88212 1.02500 1.05109 1.18341 0.86402 0.96596 1.04447 1.41953 1.03296 1.23437 1.45815 0.74414 1.21745 0.85655 0.96884 0.96397 1.44419 1.01455 1.65413 1.20804 1.18895 0.95582 1.38973 0.85585 0.88925 1.25283 0.97278 0.98488 0.95888 1.69809 1.41143 1.39076 1.04698 0.87010 0.84024 0.81166 0.76986 1.21467 1.23132 1.19799 0.94105 0.91675 0.92295 0.92104 0.91464 0.92179 0.92383 0.77899 0.82430 0.81094 0.84235 0.95898 0.90208 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.94 37.16 0.30 -2.17 16 2 C 0.17 3.18 3.49 -67.61 -0.24 2.94 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -1.95 5.37 -26.61 -0.14 -2.10 16 5 C -0.12 -1.64 5.35 -26.68 -0.14 -1.78 16 6 C 0.13 2.23 2.61 -67.81 -0.18 2.05 16 7 H 0.10 1.96 7.58 -51.93 -0.39 1.57 16 8 N -0.72 -10.65 5.08 -55.06 -0.28 -10.93 16 9 C 0.58 9.86 7.75 -12.95 -0.10 9.76 16 10 O -0.51 -11.01 16.52 5.16 0.09 -10.93 16 11 C 0.02 0.24 7.01 -82.10 -0.58 -0.34 16 12 C -0.07 -1.07 10.60 -38.95 -0.41 -1.48 16 13 C -0.22 -2.75 7.26 -38.67 -0.28 -3.03 16 14 S 0.13 1.28 23.31 -107.50 -2.51 -1.23 16 15 C -0.19 -1.50 11.13 28.86 0.32 -1.18 16 16 C -0.11 -0.98 10.16 -40.84 -0.42 -1.39 16 17 C 0.06 0.68 7.67 -84.00 -0.64 0.03 16 18 N -0.54 -5.85 6.14 -7.34 -0.05 -5.90 16 19 H 0.42 3.10 8.14 -40.82 -0.33 2.76 16 20 C 0.12 2.66 3.78 -3.56 -0.01 2.65 16 21 N -0.60 -14.01 2.76 -164.56 -0.45 -14.46 16 22 C -0.26 -7.29 9.05 -15.06 -0.14 -7.43 16 23 H 0.09 2.69 6.39 -52.48 -0.34 2.36 16 24 C 0.03 0.89 5.25 -17.43 -0.09 0.80 16 25 N -0.90 -28.41 13.97 55.49 0.78 -27.64 16 26 Si 0.88 23.29 24.35 -169.99 -4.14 19.15 16 27 H -0.29 -7.71 6.62 56.52 0.37 -7.34 16 28 H -0.30 -8.15 7.11 56.52 0.40 -7.74 16 29 H -0.27 -6.98 6.62 56.52 0.37 -6.61 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.28 7.64 -51.93 -0.40 0.88 16 32 H 0.06 1.12 7.42 -51.93 -0.39 0.73 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.39 4.11 7.68 -40.82 -0.31 3.80 16 38 H 0.16 2.23 8.06 -52.49 -0.42 1.80 16 39 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.02 0.50 7.04 -51.93 -0.37 0.14 16 42 H 0.08 2.08 4.62 -51.93 -0.24 1.84 16 43 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -35.03 354.76 -9.73 -44.76 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.76 Total: 4.48 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -2.75 Total: -2.66 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.00 Total: -58.93 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.14 Total: 19.15 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.51 Total: -1.23 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.03 -9.73 -44.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071961709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.168 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds