Wall clock time and date at job start Tue Mar 31 2020 18:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.58260 * 2 1 4 4 C 1.53191 * 109.58773 * 120.27721 * 2 1 3 5 5 C 1.53042 * 109.31437 * 174.56860 * 4 2 1 6 6 C 1.53047 * 109.53404 * 298.63683 * 5 4 2 7 7 H 1.09001 * 109.49718 * 301.41172 * 6 5 4 8 8 N 1.46501 * 109.49459 * 181.31340 * 6 5 4 9 9 C 1.34781 * 119.99754 * 154.99776 * 8 6 5 10 10 O 1.21728 * 119.99661 * 0.02562 * 9 8 6 11 11 C 1.46451 * 119.99737 * 180.02562 * 9 8 6 12 12 C 1.37466 * 125.80467 * 179.69384 * 11 9 8 13 13 C 1.40652 * 107.55623 * 179.84298 * 12 11 9 14 14 S 1.76024 * 142.39603 * 180.02562 * 13 12 11 15 15 C 1.75594 * 91.30926 * 180.37602 * 14 13 12 16 16 C 1.32773 * 110.47804 * 0.02562 * 15 14 13 17 17 C 1.38244 * 108.03443 * 0.42173 * 13 12 11 18 18 N 1.37920 * 125.80902 * 0.02562 * 11 9 8 19 19 H 0.97001 * 125.68242 * 359.97438 * 18 11 9 20 20 C 1.53189 * 109.31332 * 61.36475 * 6 5 4 21 21 N 1.46920 * 109.58934 * 239.71289 * 2 1 3 22 22 C 1.36940 * 120.63146 * 6.46825 * 21 2 1 23 23 H 1.08008 * 119.99359 * 331.06885 * 22 21 2 24 24 C 1.38810 * 120.00700 * 151.07078 * 22 21 2 25 25 N 1.31615 * 120.00193 * 160.80709 * 24 22 21 26 26 Si 1.86806 * 119.99569 * 340.80720 * 24 22 21 27 27 H 1.48500 * 109.47035 * 92.35132 * 26 24 22 28 28 H 1.48496 * 109.46873 * 212.35381 * 26 24 22 29 29 H 1.48507 * 109.47127 * 332.35620 * 26 24 22 30 30 H 1.09002 * 109.47226 * 299.99892 * 1 2 3 31 31 H 1.09003 * 109.47690 * 60.00161 * 1 2 3 32 32 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.49827 * 294.52087 * 4 2 1 34 34 H 1.09002 * 109.49658 * 54.61666 * 4 2 1 35 35 H 1.08997 * 109.45974 * 58.65498 * 5 4 2 36 36 H 1.08998 * 109.46199 * 178.61865 * 5 4 2 37 37 H 0.96999 * 120.00178 * 335.00896 * 8 6 5 38 38 H 1.08002 * 126.22013 * 359.97438 * 12 11 9 39 39 H 1.08000 * 124.76180 * 179.97438 * 15 14 13 40 40 H 1.07996 * 122.16294 * 180.02562 * 16 15 14 41 41 H 1.09005 * 109.58795 * 65.15337 * 20 6 5 42 42 H 1.08994 * 109.58758 * 185.43527 * 20 6 5 43 43 H 0.97005 * 119.99195 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8431 1.1730 6 6 3.9604 -1.6607 -0.0598 7 1 3.5037 -2.6487 -0.0016 8 7 5.4181 -1.7973 -0.1120 9 6 5.9744 -2.8393 -0.7610 10 8 5.2656 -3.6667 -1.3041 11 6 7.4316 -2.9762 -0.8128 12 6 8.1227 -3.9896 -1.4332 13 6 9.4949 -3.7418 -1.2496 14 16 11.0903 -4.3862 -1.6209 15 6 11.8676 -3.0657 -0.7634 16 6 10.9581 -2.2397 -0.2598 17 6 9.6250 -2.5818 -0.5090 18 7 8.3439 -2.1136 -0.2418 19 1 8.1274 -1.3133 0.2618 20 6 3.4685 -0.9436 -1.3209 21 7 2.0225 -0.6981 -1.1952 22 6 1.1534 -1.1130 -2.1688 23 1 0.1360 -1.3682 -1.9112 24 6 1.5799 -1.2055 -3.4865 25 7 0.9061 -1.9397 -4.3462 26 14 3.1101 -0.2878 -4.0395 27 1 4.2939 -1.1746 -3.9072 28 1 2.9553 0.1229 -5.4581 29 1 3.2976 0.9176 -3.1926 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7637 -0.1652 2.1372 34 1 1.6049 -1.7245 1.2923 35 1 4.0045 0.1530 1.1022 36 1 3.9381 -1.3388 2.0704 37 1 5.9828 -1.1379 0.3206 38 1 7.6905 -4.8233 -1.9667 39 1 12.9355 -2.9429 -0.6594 40 1 11.2302 -1.3603 0.3050 41 1 3.9920 0.0065 -1.4288 42 1 3.6599 -1.5673 -2.1941 43 1 1.2040 -2.0040 -5.2672 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071961709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:52 Heat of formation + Delta-G solvation = 34.514667 kcal Electronic energy + Delta-G solvation = -26330.635784 eV Core-core repulsion = 22695.743068 eV Total energy + Delta-G solvation = -3634.892716 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.47827 -40.84842 -39.37952 -36.33775 -36.20844 -34.69787 -32.62452 -32.57605 -31.96410 -29.44572 -27.82592 -26.67586 -24.85290 -24.27748 -23.52748 -22.25523 -21.55414 -21.33601 -20.70108 -19.71039 -18.53399 -17.85271 -17.46322 -16.84430 -16.55372 -16.42251 -16.30572 -15.53221 -15.45192 -15.29660 -15.07126 -15.01631 -14.79543 -14.60152 -14.39748 -13.98237 -13.76216 -13.47770 -13.07568 -12.86983 -12.75142 -12.58904 -12.56057 -12.53220 -12.11302 -11.80919 -11.77205 -11.74738 -11.54542 -11.37705 -11.22090 -10.83696 -10.80683 -10.34085 -9.17317 -8.89493 -8.69908 -8.18655 -5.50111 -0.30933 0.54071 0.78929 1.13905 1.23823 1.27189 1.37271 1.65031 1.74911 1.97537 2.13386 2.38018 3.03518 3.30412 3.63024 3.78014 3.79804 3.94542 3.98192 4.06883 4.23310 4.31636 4.36553 4.49715 4.56453 4.64519 4.72491 4.78737 4.84407 4.86850 4.95402 5.00113 5.05200 5.06199 5.13138 5.21765 5.29147 5.36029 5.49235 5.50245 5.62863 5.88838 6.16536 6.24308 6.41475 6.89958 6.99843 7.62501 8.01733 9.01078 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.003154 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.950742 B = 8874.689728 C = 9811.384057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.156 3.844 3 H 0.048 0.952 4 C -0.121 4.121 5 C -0.107 4.107 6 C 0.136 3.864 7 H 0.060 0.940 8 N -0.704 5.704 9 C 0.579 3.421 10 O -0.568 6.568 11 C -0.004 4.004 12 C -0.090 4.090 13 C -0.255 4.255 14 S 0.125 5.875 15 C -0.165 4.165 16 C -0.126 4.126 17 C 0.076 3.924 18 N -0.525 5.525 19 H 0.435 0.565 20 C 0.118 3.882 21 N -0.613 5.613 22 C -0.235 4.235 23 H 0.069 0.931 24 C -0.036 4.036 25 N -0.957 5.957 26 Si 0.938 3.062 27 H -0.301 1.301 28 H -0.311 1.311 29 H -0.251 1.251 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.105 0.895 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.413 0.587 38 H 0.142 0.858 39 H 0.211 0.789 40 H 0.176 0.824 41 H 0.036 0.964 42 H 0.032 0.968 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.569 4.425 16.776 29.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.052 3.948 3 H 0.066 0.934 4 C -0.160 4.160 5 C -0.144 4.144 6 C 0.030 3.970 7 H 0.078 0.922 8 N -0.356 5.356 9 C 0.366 3.634 10 O -0.446 6.446 11 C -0.119 4.119 12 C -0.122 4.122 13 C -0.375 4.375 14 S 0.384 5.616 15 C -0.301 4.301 16 C -0.158 4.158 17 C -0.044 4.044 18 N -0.129 5.129 19 H 0.276 0.724 20 C -0.008 4.008 21 N -0.338 5.338 22 C -0.365 4.365 23 H 0.087 0.913 24 C -0.230 4.230 25 N -0.604 5.604 26 Si 0.769 3.231 27 H -0.229 1.229 28 H -0.240 1.240 29 H -0.175 1.175 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.123 0.877 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.250 0.750 38 H 0.160 0.840 39 H 0.228 0.772 40 H 0.193 0.807 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 23.441 2.743 15.591 28.286 hybrid contribution -0.328 1.560 -0.313 1.624 sum 23.114 4.303 15.279 28.039 Atomic orbital electron populations 1.21765 0.94958 1.00936 1.01335 1.20903 0.94220 0.94144 0.85521 0.93447 1.21980 0.94549 1.01039 0.98427 1.21690 0.97035 1.00417 0.95291 1.21478 0.78377 0.99948 0.97167 0.92205 1.45751 1.08090 1.26467 1.55251 1.17344 0.85866 0.81747 0.78422 1.90926 1.62812 1.43956 1.46903 1.19923 0.88181 0.96169 1.07641 1.20523 0.90166 0.99291 1.02182 1.22916 0.98658 1.03572 1.12330 1.84007 0.91962 1.27985 1.57680 1.25766 1.04856 0.97187 1.02288 1.19214 0.86503 1.04078 1.06018 1.18861 0.87329 0.95545 1.02696 1.41759 1.02601 1.23348 1.45237 0.72356 1.21681 0.85259 0.96889 0.96988 1.44616 1.01518 1.66366 1.21324 1.18915 0.95260 1.35890 0.86387 0.91336 1.25888 1.00347 1.00243 0.96525 1.69939 1.43673 1.41937 1.04877 0.86024 0.80498 0.80325 0.76273 1.22908 1.23959 1.17477 0.89664 0.94317 0.94432 0.87705 0.93239 0.89383 0.88975 0.74953 0.84016 0.77239 0.80700 0.94595 0.94939 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 7.94 71.98 0.57 -4.03 16 2 C 0.16 5.53 3.49 44.97 0.16 5.69 16 3 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 4 C -0.12 -3.23 5.37 30.67 0.16 -3.07 16 5 C -0.11 -2.52 5.35 30.62 0.16 -2.36 16 6 C 0.14 4.69 2.61 45.07 0.12 4.81 16 7 H 0.06 2.52 7.58 -2.39 -0.02 2.50 16 8 N -0.70 -19.83 5.08 -446.31 -2.27 -22.10 16 9 C 0.58 20.26 7.75 86.38 0.67 20.93 16 10 O -0.57 -26.57 16.52 -4.44 -0.07 -26.64 16 11 C 0.00 -0.13 7.01 40.14 0.28 0.15 16 12 C -0.09 -2.73 10.60 22.68 0.24 -2.49 16 13 C -0.26 -6.30 7.26 22.86 0.17 -6.13 16 14 S 0.12 2.22 23.31 -56.49 -1.32 0.90 16 15 C -0.17 -1.85 11.13 66.64 0.74 -1.11 16 16 C -0.13 -1.59 10.16 21.49 0.22 -1.38 16 17 C 0.08 1.51 7.67 38.40 0.29 1.81 16 18 N -0.52 -10.19 6.14 -177.14 -1.09 -11.27 16 19 H 0.43 4.93 8.14 -92.71 -0.75 4.17 16 20 C 0.12 5.22 3.78 86.31 0.33 5.55 16 21 N -0.61 -28.80 2.76 -674.54 -1.86 -30.66 16 22 C -0.23 -13.57 9.05 84.03 0.76 -12.81 16 23 H 0.07 4.22 6.39 -2.91 -0.02 4.20 16 24 C -0.04 -2.21 5.25 84.86 0.45 -1.76 16 25 N -0.96 -63.80 13.97 21.65 0.30 -63.50 16 26 Si 0.94 50.45 24.35 68.60 1.67 52.12 16 27 H -0.30 -16.65 6.62 99.48 0.66 -15.99 16 28 H -0.31 -16.84 7.11 99.48 0.71 -16.13 16 29 H -0.25 -12.34 6.62 99.48 0.66 -11.68 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.04 1.51 7.64 -2.39 -0.02 1.50 16 32 H 0.04 1.43 7.42 -2.39 -0.02 1.41 16 33 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.41 7.38 7.68 -92.71 -0.71 6.67 16 38 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.21 0.72 8.06 -2.91 -0.02 0.69 16 40 H 0.18 1.03 8.06 -2.91 -0.02 1.00 16 41 H 0.04 1.49 7.04 -2.38 -0.02 1.48 16 42 H 0.03 1.75 4.62 -2.39 -0.01 1.74 16 43 H 0.26 16.53 8.31 -92.70 -0.77 15.76 16 Total: -1.00 -85.23 354.76 0.19 -85.04 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -0.50 Total: 12.30 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 5.32 Total: 3.80 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -4.91 Total: -127.54 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.07 Total: -26.64 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 1.67 Total: 52.12 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.32 Total: 0.90 kcal Total: -85.23 0.19 -85.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071961709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.559 kcal (2) G-P(sol) polarization free energy of solvation -85.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds