Wall clock time and date at job start Tue Mar 31 2020 18:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.69945 * 2 1 4 4 C 1.53191 * 109.58872 * 239.63986 * 2 1 3 5 5 C 1.53043 * 109.31113 * 185.58029 * 4 2 1 6 6 C 1.53035 * 109.52636 * 61.37137 * 5 4 2 7 7 H 1.09001 * 109.49304 * 178.68035 * 6 5 4 8 8 N 1.46501 * 109.49891 * 58.58054 * 6 5 4 9 9 C 1.34777 * 119.99780 * 155.00015 * 8 6 5 10 10 O 1.21735 * 120.00243 * 359.97438 * 9 8 6 11 11 C 1.46410 * 119.99548 * 180.02562 * 9 8 6 12 12 C 1.35786 * 124.95683 * 179.97438 * 11 9 8 13 13 C 1.38873 * 115.18271 * 179.97438 * 12 11 9 14 14 N 1.39745 * 139.91051 * 179.97438 * 13 12 11 15 15 H 0.97005 * 125.63305 * 0.03297 * 14 13 12 16 16 C 1.36213 * 108.73230 * 180.02562 * 14 13 12 17 17 C 1.34507 * 109.29453 * 0.02562 * 16 14 13 18 18 C 1.38238 * 113.39302 * 359.97438 * 13 12 11 19 19 S 1.75618 * 124.96068 * 359.68756 * 11 9 8 20 20 C 1.53194 * 109.31292 * 298.60959 * 6 5 4 21 21 N 1.46922 * 109.58343 * 120.34841 * 2 1 3 22 22 C 1.36938 * 120.63458 * 353.37721 * 21 2 1 23 23 H 1.08002 * 119.99890 * 29.05483 * 22 21 2 24 24 C 1.38809 * 120.00242 * 209.05491 * 22 21 2 25 25 N 1.31618 * 120.00290 * 15.05364 * 24 22 21 26 26 Si 1.86802 * 120.00128 * 195.04849 * 24 22 21 27 27 H 1.48497 * 109.46839 * 60.00142 * 26 24 22 28 28 H 1.48500 * 109.47277 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47172 * 300.00420 * 26 24 22 30 30 H 1.09001 * 109.47514 * 180.35742 * 1 2 3 31 31 H 1.09002 * 109.47676 * 300.36264 * 1 2 3 32 32 H 1.09003 * 109.46778 * 60.35704 * 1 2 3 33 33 H 1.08997 * 109.49343 * 65.63125 * 4 2 1 34 34 H 1.08997 * 109.52139 * 305.54403 * 4 2 1 35 35 H 1.09001 * 109.45895 * 181.38703 * 5 4 2 36 36 H 1.08999 * 109.46035 * 301.35555 * 5 4 2 37 37 H 0.96996 * 119.99724 * 334.99645 * 8 6 5 38 38 H 1.07994 * 122.40490 * 359.97438 * 12 11 9 39 39 H 1.08001 * 125.35069 * 179.97438 * 16 14 13 40 40 H 1.08005 * 126.07080 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.60259 * 294.87384 * 20 6 5 42 42 H 1.08999 * 109.70281 * 174.50657 * 20 6 5 43 43 H 0.96998 * 120.00359 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5676 -0.8481 -1.1699 6 6 3.9565 -1.6659 0.0637 7 1 5.0408 -1.7698 0.1041 8 7 3.3399 -2.9925 -0.0147 9 6 3.8962 -4.0336 0.6358 10 8 4.9112 -3.8717 1.2881 11 6 3.2802 -5.3595 0.5570 12 6 3.7538 -6.4750 1.1695 13 6 3.0081 -7.6272 0.9577 14 7 3.0083 -8.9802 1.3074 15 1 3.6656 -9.4183 1.8703 16 6 1.9328 -9.5821 0.7273 17 6 1.2421 -8.6709 0.0188 18 6 1.9037 -7.4256 0.1510 19 16 1.8171 -5.7378 -0.3376 20 6 3.4650 -0.9467 1.3239 21 7 2.0224 -0.6994 1.1945 22 6 1.1536 -1.1125 2.1691 23 1 0.1360 -1.3674 1.9125 24 6 1.5809 -1.2037 3.4866 25 7 2.7035 -0.6245 3.8561 26 14 0.5624 -2.1483 4.7356 27 1 0.4339 -3.5626 4.3014 28 1 1.2311 -2.0966 6.0605 29 1 -0.7873 -1.5373 4.8375 30 1 -0.3634 -1.0276 0.0064 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5083 -0.8932 33 1 1.7661 -0.1669 -2.1367 34 1 1.6031 -1.7254 -1.2917 35 1 3.9379 -1.3450 -2.0666 36 1 4.0062 0.1472 -1.0989 37 1 2.5314 -3.1215 -0.5346 38 1 4.6462 -6.4667 1.7776 39 1 1.6756 -10.6268 0.8209 40 1 0.3420 -8.8558 -0.5487 41 1 3.9902 0.0022 1.4318 42 1 3.6519 -1.5694 2.1988 43 1 3.0019 -0.6879 4.7768 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072029956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:09 Heat of formation + Delta-G solvation = 58.421795 kcal Electronic energy + Delta-G solvation = -26947.339407 eV Core-core repulsion = 23313.483381 eV Total energy + Delta-G solvation = -3633.856025 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.17674 -39.43643 -37.57585 -34.92702 -34.04446 -32.69039 -31.02458 -30.75149 -29.84388 -28.07138 -26.15159 -24.97264 -23.80867 -22.13223 -21.76654 -20.85203 -20.38803 -19.58966 -18.78684 -18.26912 -16.74571 -16.23115 -15.46722 -15.34534 -15.04113 -14.75226 -14.26674 -14.22327 -13.89084 -13.83325 -13.53790 -13.45708 -13.14579 -12.79215 -12.69675 -12.44165 -11.91265 -11.90101 -11.36801 -11.18990 -11.11952 -10.90553 -10.85114 -10.77751 -10.64138 -10.34093 -10.29489 -9.91503 -9.66266 -9.59374 -9.43283 -9.38617 -8.40514 -8.38612 -8.04199 -7.59820 -6.54701 -5.68870 -3.12686 0.70563 1.55905 2.10536 2.45904 2.66424 2.94882 3.43250 3.49683 3.51278 3.64104 3.83456 4.56101 4.82219 4.89631 5.05984 5.34832 5.37815 5.41249 5.46144 5.50963 5.55273 5.64663 5.78740 5.97283 6.05005 6.07245 6.15448 6.20847 6.36804 6.39313 6.47445 6.48700 6.56138 6.64640 6.70708 6.71998 6.92485 7.08937 7.16361 7.33871 7.42293 7.75325 7.89555 8.08321 8.55173 8.74436 9.29604 9.94189 10.49793 11.39105 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011670 B = 0.004597 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.645549 B = 6089.947172 C = 6926.820230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.078 0.922 8 N -0.692 5.692 9 C 0.589 3.411 10 O -0.536 6.536 11 C -0.215 4.215 12 C -0.045 4.045 13 C 0.029 3.971 14 N -0.559 5.559 15 H 0.418 0.582 16 C 0.050 3.950 17 C -0.171 4.171 18 C -0.194 4.194 19 S 0.166 5.834 20 C 0.161 3.839 21 N -0.583 5.583 22 C -0.249 4.249 23 H 0.068 0.932 24 C 0.007 3.993 25 N -0.900 5.900 26 Si 0.894 3.106 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.394 0.606 38 H 0.148 0.852 39 H 0.176 0.824 40 H 0.145 0.855 41 H 0.026 0.974 42 H 0.098 0.902 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 -13.855 -10.987 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.171 4.171 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.096 0.904 8 N -0.342 5.342 9 C 0.374 3.626 10 O -0.416 6.416 11 C -0.336 4.336 12 C -0.081 4.081 13 C -0.085 4.085 14 N -0.160 5.160 15 H 0.255 0.745 16 C -0.083 4.083 17 C -0.201 4.201 18 C -0.316 4.316 19 S 0.429 5.571 20 C 0.034 3.966 21 N -0.306 5.306 22 C -0.378 4.378 23 H 0.085 0.915 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.724 3.276 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.229 0.771 38 H 0.165 0.835 39 H 0.193 0.807 40 H 0.163 0.837 41 H 0.044 0.956 42 H 0.116 0.884 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.815 -12.853 -11.147 17.033 hybrid contribution 0.303 -1.684 1.752 2.449 sum -0.512 -14.537 -9.394 17.316 Atomic orbital electron populations 1.21798 0.96103 1.01318 1.00126 1.20459 0.92908 0.93615 0.87129 0.95729 1.22083 0.95150 1.00691 0.99198 1.21700 0.97070 1.00186 0.96761 1.21840 0.97018 0.81364 0.98478 0.90401 1.45698 1.29069 1.08603 1.50789 1.16716 0.83879 0.82329 0.79692 1.90809 1.24957 1.84427 1.41365 1.23927 1.02332 0.98014 1.09280 1.19201 1.00504 0.88057 1.00348 1.18012 0.99619 0.85839 1.05041 1.41870 1.24507 1.06174 1.43460 0.74458 1.21795 0.89150 0.98668 0.98701 1.20096 1.03011 0.89454 1.07493 1.23207 1.01755 0.98969 1.07703 1.83731 1.24089 0.97990 1.51248 1.21209 0.83781 0.97111 0.94481 1.44043 1.02706 1.64796 1.19061 1.19036 0.94631 1.38028 0.86135 0.91456 1.25021 0.97646 0.99584 0.96936 1.69964 1.23207 1.44359 1.16884 0.86504 0.79635 0.80468 0.81011 1.21033 1.21743 1.20961 0.92876 0.92065 0.94429 0.92744 0.92760 0.92941 0.90942 0.77134 0.83457 0.80734 0.83714 0.95575 0.88360 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.94 37.16 0.30 -2.19 16 2 C 0.17 3.29 3.50 -67.60 -0.24 3.05 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.14 5.21 -26.61 -0.14 -2.28 16 5 C -0.12 -1.91 5.59 -26.69 -0.15 -2.06 16 6 C 0.12 2.31 2.81 -67.81 -0.19 2.12 16 7 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 8 N -0.69 -13.16 4.91 -55.08 -0.27 -13.43 16 9 C 0.59 11.99 7.74 -12.97 -0.10 11.89 16 10 O -0.54 -12.54 16.43 5.16 0.08 -12.45 16 11 C -0.21 -3.79 6.38 -37.17 -0.24 -4.03 16 12 C -0.05 -0.73 9.88 -40.22 -0.40 -1.13 16 13 C 0.03 0.41 7.67 -84.02 -0.64 -0.24 16 14 N -0.56 -5.65 6.21 -10.90 -0.07 -5.72 16 15 H 0.42 2.87 8.96 -40.82 -0.37 2.51 16 16 C 0.05 0.44 11.85 -16.92 -0.20 0.24 16 17 C -0.17 -1.91 10.84 -39.61 -0.43 -2.34 16 18 C -0.19 -2.78 7.31 -38.29 -0.28 -3.06 16 19 S 0.17 2.50 22.29 -107.50 -2.40 0.10 16 20 C 0.16 3.88 4.90 -3.71 -0.02 3.86 16 21 N -0.58 -14.01 2.91 -164.78 -0.48 -14.49 16 22 C -0.25 -6.64 8.61 -15.06 -0.13 -6.77 16 23 H 0.07 1.76 6.20 -52.49 -0.33 1.43 16 24 C 0.01 0.20 4.96 -17.43 -0.09 0.11 16 25 N -0.90 -26.72 11.14 55.49 0.62 -26.10 16 26 Si 0.89 22.51 29.58 -169.99 -5.03 17.48 16 27 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 29 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.05 0.98 7.40 -51.93 -0.38 0.59 16 31 H 0.06 1.22 7.66 -51.93 -0.40 0.83 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.88 6.40 -51.93 -0.33 0.55 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.39 6.87 5.83 -40.82 -0.24 6.64 16 38 H 0.15 2.27 8.00 -52.49 -0.42 1.85 16 39 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.15 1.30 8.06 -52.48 -0.42 0.87 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 2.80 6.06 -51.93 -0.31 2.49 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 357.34 15.07 5.39 5.39 Total: -1.00 -33.49 357.34 -10.79 -44.28 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.69 Total: 7.77 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.94 Total: -2.81 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.20 Total: -59.74 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.40 Total: 0.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.49 -10.79 -44.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072029956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.701 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds