Wall clock time and date at job start Tue Mar 31 2020 18:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.69945 * 2 1 4 4 C 1.53191 * 109.58872 * 239.63986 * 2 1 3 5 5 C 1.53043 * 109.31113 * 185.58029 * 4 2 1 6 6 C 1.53035 * 109.52636 * 61.37137 * 5 4 2 7 7 H 1.09001 * 109.49304 * 178.68035 * 6 5 4 8 8 N 1.46501 * 109.49891 * 58.58054 * 6 5 4 9 9 C 1.34777 * 119.99780 * 155.00015 * 8 6 5 10 10 O 1.21735 * 120.00243 * 359.97438 * 9 8 6 11 11 C 1.46410 * 119.99548 * 180.02562 * 9 8 6 12 12 C 1.35786 * 124.95683 * 179.97438 * 11 9 8 13 13 C 1.38873 * 115.18271 * 179.97438 * 12 11 9 14 14 N 1.39745 * 139.91051 * 179.97438 * 13 12 11 15 15 H 0.97005 * 125.63305 * 0.03297 * 14 13 12 16 16 C 1.36213 * 108.73230 * 180.02562 * 14 13 12 17 17 C 1.34507 * 109.29453 * 0.02562 * 16 14 13 18 18 C 1.38238 * 113.39302 * 359.97438 * 13 12 11 19 19 S 1.75618 * 124.96068 * 359.68756 * 11 9 8 20 20 C 1.53194 * 109.31292 * 298.60959 * 6 5 4 21 21 N 1.46922 * 109.58343 * 120.34841 * 2 1 3 22 22 C 1.36938 * 120.63458 * 353.37721 * 21 2 1 23 23 H 1.08002 * 119.99890 * 29.05483 * 22 21 2 24 24 C 1.38809 * 120.00242 * 209.05491 * 22 21 2 25 25 N 1.31618 * 120.00290 * 15.05364 * 24 22 21 26 26 Si 1.86802 * 120.00128 * 195.04849 * 24 22 21 27 27 H 1.48497 * 109.46839 * 60.00142 * 26 24 22 28 28 H 1.48500 * 109.47277 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47172 * 300.00420 * 26 24 22 30 30 H 1.09001 * 109.47514 * 180.35742 * 1 2 3 31 31 H 1.09002 * 109.47676 * 300.36264 * 1 2 3 32 32 H 1.09003 * 109.46778 * 60.35704 * 1 2 3 33 33 H 1.08997 * 109.49343 * 65.63125 * 4 2 1 34 34 H 1.08997 * 109.52139 * 305.54403 * 4 2 1 35 35 H 1.09001 * 109.45895 * 181.38703 * 5 4 2 36 36 H 1.08999 * 109.46035 * 301.35555 * 5 4 2 37 37 H 0.96996 * 119.99724 * 334.99645 * 8 6 5 38 38 H 1.07994 * 122.40490 * 359.97438 * 12 11 9 39 39 H 1.08001 * 125.35069 * 179.97438 * 16 14 13 40 40 H 1.08005 * 126.07080 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.60259 * 294.87384 * 20 6 5 42 42 H 1.08999 * 109.70281 * 174.50657 * 20 6 5 43 43 H 0.96998 * 120.00359 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5676 -0.8481 -1.1699 6 6 3.9565 -1.6659 0.0637 7 1 5.0408 -1.7698 0.1041 8 7 3.3399 -2.9925 -0.0147 9 6 3.8962 -4.0336 0.6358 10 8 4.9112 -3.8717 1.2881 11 6 3.2802 -5.3595 0.5570 12 6 3.7538 -6.4750 1.1695 13 6 3.0081 -7.6272 0.9577 14 7 3.0083 -8.9802 1.3074 15 1 3.6656 -9.4183 1.8703 16 6 1.9328 -9.5821 0.7273 17 6 1.2421 -8.6709 0.0188 18 6 1.9037 -7.4256 0.1510 19 16 1.8171 -5.7378 -0.3376 20 6 3.4650 -0.9467 1.3239 21 7 2.0224 -0.6994 1.1945 22 6 1.1536 -1.1125 2.1691 23 1 0.1360 -1.3674 1.9125 24 6 1.5809 -1.2037 3.4866 25 7 2.7035 -0.6245 3.8561 26 14 0.5624 -2.1483 4.7356 27 1 0.4339 -3.5626 4.3014 28 1 1.2311 -2.0966 6.0605 29 1 -0.7873 -1.5373 4.8375 30 1 -0.3634 -1.0276 0.0064 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5083 -0.8932 33 1 1.7661 -0.1669 -2.1367 34 1 1.6031 -1.7254 -1.2917 35 1 3.9379 -1.3450 -2.0666 36 1 4.0062 0.1472 -1.0989 37 1 2.5314 -3.1215 -0.5346 38 1 4.6462 -6.4667 1.7776 39 1 1.6756 -10.6268 0.8209 40 1 0.3420 -8.8558 -0.5487 41 1 3.9902 0.0022 1.4318 42 1 3.6519 -1.5694 2.1988 43 1 3.0019 -0.6879 4.7768 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072029956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:08 Heat of formation + Delta-G solvation = 36.068884 kcal Electronic energy + Delta-G solvation = -26948.308701 eV Core-core repulsion = 23313.483381 eV Total energy + Delta-G solvation = -3634.825320 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11523 -41.01159 -39.19969 -36.12614 -35.73192 -34.51444 -32.40187 -31.82584 -31.71921 -29.21361 -27.80560 -26.77127 -25.06230 -23.87750 -22.92609 -22.08773 -21.70288 -20.85917 -20.42256 -19.39898 -18.21579 -17.94780 -17.13024 -16.67822 -16.48253 -16.12924 -15.82500 -15.60624 -15.40554 -15.26937 -14.98251 -14.71800 -14.45152 -14.36189 -14.01783 -13.66534 -13.64299 -12.99790 -12.96607 -12.87381 -12.60777 -12.58424 -12.49683 -12.41021 -12.13253 -12.08413 -11.96055 -11.58076 -11.25087 -11.11631 -11.03825 -10.65905 -10.50786 -10.04461 -9.12380 -8.62021 -8.55734 -7.80973 -5.25490 -0.48095 0.43528 0.96781 1.38359 1.40849 1.43355 1.46826 1.73625 1.97120 2.23182 2.43016 2.50625 3.34892 3.64340 3.76445 3.96114 4.03138 4.10017 4.16414 4.18921 4.23940 4.49389 4.55132 4.64374 4.71906 4.80717 4.81880 4.96520 4.97284 5.03776 5.07474 5.09681 5.11596 5.26682 5.32663 5.56727 5.57771 5.61414 5.66702 5.74290 5.75745 5.79175 6.45620 6.55423 6.61794 7.19941 7.21614 7.94547 8.44753 9.24147 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011670 B = 0.004597 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.645549 B = 6089.947172 C = 6926.820230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 H 0.018 0.982 4 C -0.121 4.121 5 C -0.111 4.111 6 C 0.126 3.874 7 H 0.069 0.931 8 N -0.685 5.685 9 C 0.583 3.417 10 O -0.583 6.583 11 C -0.265 4.265 12 C -0.034 4.034 13 C -0.007 4.007 14 N -0.547 5.547 15 H 0.434 0.566 16 C 0.091 3.909 17 C -0.198 4.198 18 C -0.198 4.198 19 S 0.176 5.824 20 C 0.171 3.829 21 N -0.595 5.595 22 C -0.235 4.235 23 H 0.076 0.924 24 C -0.053 4.053 25 N -0.936 5.936 26 Si 0.945 3.055 27 H -0.287 1.287 28 H -0.302 1.302 29 H -0.268 1.268 30 H 0.050 0.950 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.402 0.598 38 H 0.141 0.859 39 H 0.231 0.769 40 H 0.168 0.832 41 H 0.001 0.999 42 H 0.048 0.952 43 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 -16.671 -13.565 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.035 0.965 4 C -0.160 4.160 5 C -0.149 4.149 6 C 0.020 3.980 7 H 0.087 0.913 8 N -0.335 5.335 9 C 0.371 3.629 10 O -0.466 6.466 11 C -0.385 4.385 12 C -0.071 4.071 13 C -0.120 4.120 14 N -0.149 5.149 15 H 0.274 0.726 16 C -0.044 4.044 17 C -0.227 4.227 18 C -0.321 4.321 19 S 0.440 5.560 20 C 0.044 3.956 21 N -0.319 5.319 22 C -0.365 4.365 23 H 0.093 0.907 24 C -0.248 4.248 25 N -0.583 5.583 26 Si 0.775 3.225 27 H -0.213 1.213 28 H -0.229 1.229 29 H -0.193 1.193 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.239 0.761 38 H 0.159 0.841 39 H 0.247 0.753 40 H 0.185 0.815 41 H 0.019 0.981 42 H 0.066 0.934 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.057 -15.655 -13.768 21.071 hybrid contribution 0.940 -0.990 2.518 2.864 sum -2.117 -16.645 -11.250 20.202 Atomic orbital electron populations 1.21730 0.94658 1.01323 1.00907 1.20776 0.94218 0.93286 0.86823 0.96467 1.21985 0.94728 1.00892 0.98437 1.21687 0.97360 1.00059 0.95789 1.21604 0.96476 0.81817 0.98107 0.91285 1.45606 1.29254 1.08055 1.50542 1.17184 0.83389 0.83617 0.78731 1.90761 1.27052 1.85430 1.43337 1.23641 1.04861 0.97056 1.12927 1.19322 1.00038 0.88818 0.98889 1.17893 1.00005 0.87203 1.06857 1.42026 1.25194 1.04633 1.43044 0.72551 1.22729 0.86529 1.00361 0.94779 1.20574 1.04527 0.88368 1.09232 1.23651 1.02074 0.99305 1.07045 1.83423 1.22564 0.99175 1.50872 1.20868 0.84267 0.95420 0.95065 1.44261 1.02218 1.65510 1.19938 1.19368 0.95019 1.35664 0.86463 0.90684 1.25683 0.98861 1.01384 0.98888 1.70141 1.25127 1.46754 1.16304 0.85656 0.78972 0.79186 0.78700 1.21329 1.22875 1.19349 0.93124 0.94567 0.90441 0.88763 0.92408 0.89603 0.90287 0.76079 0.84123 0.75312 0.81457 0.98105 0.93351 0.94890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 7.94 71.98 0.57 -3.87 16 2 C 0.15 5.94 3.50 44.97 0.16 6.09 16 3 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 4 C -0.12 -3.57 5.21 30.67 0.16 -3.41 16 5 C -0.11 -3.35 5.59 30.62 0.17 -3.18 16 6 C 0.13 5.05 2.81 45.07 0.13 5.18 16 7 H 0.07 2.88 7.58 -2.39 -0.02 2.86 16 8 N -0.69 -26.72 4.91 -446.37 -2.19 -28.91 16 9 C 0.58 25.08 7.74 86.37 0.67 25.74 16 10 O -0.58 -29.36 16.43 -4.46 -0.07 -29.44 16 11 C -0.26 -9.70 6.38 23.83 0.15 -9.55 16 12 C -0.03 -1.13 9.88 21.85 0.22 -0.92 16 13 C -0.01 -0.18 7.67 38.03 0.29 0.11 16 14 N -0.55 -9.23 6.21 -188.39 -1.17 -10.40 16 15 H 0.43 4.52 8.96 -92.70 -0.83 3.69 16 16 C 0.09 1.13 11.85 83.16 0.99 2.12 16 17 C -0.20 -3.65 10.84 22.25 0.24 -3.41 16 18 C -0.20 -5.29 7.31 23.11 0.17 -5.12 16 19 S 0.18 5.22 22.29 -56.49 -1.26 3.96 16 20 C 0.17 8.71 4.90 86.36 0.42 9.13 16 21 N -0.60 -29.26 2.91 -675.23 -1.96 -31.22 16 22 C -0.23 -12.80 8.61 84.03 0.72 -12.08 16 23 H 0.08 3.93 6.20 -2.91 -0.02 3.91 16 24 C -0.05 -3.13 4.96 84.86 0.42 -2.71 16 25 N -0.94 -58.93 11.14 21.65 0.24 -58.68 16 26 Si 0.95 47.80 29.58 68.60 2.03 49.83 16 27 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.30 -15.65 7.11 99.48 0.71 -14.95 16 29 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 30 H 0.05 1.76 7.40 -2.39 -0.02 1.74 16 31 H 0.04 1.40 7.66 -2.39 -0.02 1.39 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.06 1.69 6.40 -2.39 -0.02 1.68 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.40 13.97 5.83 -92.71 -0.54 13.43 16 38 H 0.14 4.64 8.00 -2.91 -0.02 4.62 16 39 H 0.23 0.34 8.06 -2.91 -0.02 0.32 16 40 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.05 2.96 6.06 -2.39 -0.01 2.95 16 43 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -79.79 357.34 0.78 -79.01 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.31 Total: 21.73 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.48 Total: 4.12 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -5.08 Total: -129.22 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.07 Total: -29.44 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.26 Total: 3.96 kcal Total: -79.79 0.78 -79.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072029956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.081 kcal (2) G-P(sol) polarization free energy of solvation -79.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds