Wall clock time and date at job start Tue Mar 31 2020 18:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.58519 * 2 1 4 4 C 1.53191 * 109.58469 * 120.27770 * 2 1 3 5 5 C 1.53041 * 109.31394 * 174.56870 * 4 2 1 6 6 C 1.53040 * 109.53557 * 298.63509 * 5 4 2 7 7 H 1.08993 * 109.50100 * 301.41547 * 6 5 4 8 8 N 1.46507 * 109.49753 * 181.31236 * 6 5 4 9 9 C 1.34776 * 119.99642 * 155.00140 * 8 6 5 10 10 O 1.21733 * 120.00214 * 359.97438 * 9 8 6 11 11 C 1.46409 * 119.99923 * 180.02562 * 9 8 6 12 12 C 1.35778 * 124.96385 * 180.02562 * 11 9 8 13 13 C 1.38866 * 115.18719 * 179.97438 * 12 11 9 14 14 N 1.39747 * 139.91191 * 179.97438 * 13 12 11 15 15 H 0.97001 * 125.63618 * 0.02562 * 14 13 12 16 16 C 1.36213 * 108.73203 * 179.97438 * 14 13 12 17 17 C 1.34505 * 109.29728 * 0.02562 * 16 14 13 18 18 C 1.38244 * 113.39544 * 359.97438 * 13 12 11 19 19 S 1.75625 * 124.95609 * 359.69011 * 11 9 8 20 20 C 1.53197 * 109.31384 * 61.36343 * 6 5 4 21 21 N 1.46921 * 109.70759 * 239.63920 * 2 1 3 22 22 C 1.36942 * 120.62940 * 6.51290 * 21 2 1 23 23 H 1.08001 * 119.99595 * 330.20678 * 22 21 2 24 24 C 1.38810 * 120.00016 * 150.20036 * 22 21 2 25 25 N 1.31620 * 119.99942 * 344.47828 * 24 22 21 26 26 Si 1.86795 * 119.99872 * 164.47425 * 24 22 21 27 27 H 1.48502 * 109.47291 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46879 * 120.00159 * 26 24 22 29 29 H 1.48499 * 109.47336 * 240.00094 * 26 24 22 30 30 H 1.09000 * 109.47586 * 300.00585 * 1 2 3 31 31 H 1.09001 * 109.46932 * 60.00680 * 1 2 3 32 32 H 1.09003 * 109.47027 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.49925 * 294.51830 * 4 2 1 34 34 H 1.08999 * 109.49936 * 54.61865 * 4 2 1 35 35 H 1.09006 * 109.45921 * 58.65326 * 5 4 2 36 36 H 1.08992 * 109.46659 * 178.61377 * 5 4 2 37 37 H 0.96996 * 119.99717 * 335.00126 * 8 6 5 38 38 H 1.08002 * 122.40168 * 359.93489 * 12 11 9 39 39 H 1.08006 * 125.35060 * 179.97438 * 16 14 13 40 40 H 1.08003 * 126.07307 * 180.02562 * 17 16 14 41 41 H 1.09011 * 109.58304 * 65.15280 * 20 6 5 42 42 H 1.08994 * 109.58664 * 185.43222 * 20 6 5 43 43 H 0.97005 * 119.99905 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8432 1.1731 6 6 3.9604 -1.6607 -0.0596 7 1 3.5037 -2.6487 -0.0015 8 7 5.4181 -1.7974 -0.1118 9 6 5.9744 -2.8394 -0.7608 10 8 5.2657 -3.6672 -1.3032 11 6 7.4312 -2.9762 -0.8126 12 6 8.0965 -3.9820 -1.4365 13 6 9.4812 -3.9119 -1.3590 14 7 10.6126 -4.6162 -1.7795 15 1 10.6077 -5.4347 -2.3001 16 6 11.7235 -3.9629 -1.3386 17 6 11.3519 -2.8680 -0.6514 18 6 9.9366 -2.8152 -0.6512 19 16 8.5734 -1.8588 -0.0838 20 6 3.4686 -0.9436 -1.3209 21 7 2.0254 -0.6991 -1.1935 22 6 1.1585 -1.1153 -2.1684 23 1 0.1448 -1.3840 -1.9107 24 6 1.5828 -1.1917 -3.4879 25 7 2.6926 -0.5887 -3.8583 26 14 0.5787 -2.1503 -4.7378 27 1 -0.6163 -2.7296 -4.0733 28 1 0.1455 -1.2396 -5.8280 29 1 1.4082 -3.2431 -5.3060 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.7637 -0.1653 2.1372 34 1 1.6049 -1.7245 1.2923 35 1 4.0045 0.1531 1.1023 36 1 3.9381 -1.3388 2.0705 37 1 5.9828 -1.1379 0.3207 38 1 7.5854 -4.7796 -1.9552 39 1 12.7426 -4.2755 -1.5126 40 1 12.0150 -2.1553 -0.1836 41 1 3.9921 0.0064 -1.4286 42 1 3.6600 -1.5674 -2.1940 43 1 2.9889 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072029957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:13 Heat of formation + Delta-G solvation = 55.713116 kcal Electronic energy + Delta-G solvation = -26091.007915 eV Core-core repulsion = 22457.034433 eV Total energy + Delta-G solvation = -3633.973483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.30791 -39.44281 -37.60641 -35.10351 -34.32193 -32.77282 -31.12273 -30.78418 -29.82898 -28.24462 -26.01170 -25.01884 -23.72895 -22.24419 -21.77682 -20.94504 -20.30999 -19.74987 -19.01382 -18.45866 -16.68262 -16.39591 -15.65608 -15.51425 -15.11318 -14.89197 -14.35437 -14.21049 -13.93798 -13.75071 -13.64771 -13.54454 -13.32129 -12.85982 -12.72276 -12.35251 -12.03392 -11.82890 -11.59875 -11.36744 -11.08953 -10.96106 -10.85082 -10.68557 -10.49091 -10.35614 -10.21028 -9.92453 -9.80890 -9.78439 -9.45697 -9.41097 -8.56405 -8.37778 -8.19551 -7.74607 -6.55860 -5.69507 -3.14286 0.55547 1.40020 1.94018 2.33550 2.52869 2.82413 3.44022 3.50578 3.53044 3.54256 3.59815 4.57456 4.71628 4.75468 4.91380 5.23630 5.34258 5.38150 5.41274 5.52873 5.61033 5.66654 5.71656 5.84867 5.95216 6.01106 6.14925 6.30986 6.33963 6.36219 6.43113 6.49109 6.53150 6.58317 6.66860 6.77807 6.94208 7.08621 7.16914 7.21820 7.35917 7.78618 7.87528 7.93013 8.53892 8.58996 9.29167 9.93537 10.49187 11.38649 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015521 B = 0.003234 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.581223 B = 8656.183221 C = 9946.253432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.118 3.882 7 H 0.084 0.916 8 N -0.713 5.713 9 C 0.586 3.414 10 O -0.521 6.521 11 C -0.221 4.221 12 C -0.040 4.040 13 C 0.028 3.972 14 N -0.557 5.557 15 H 0.419 0.581 16 C 0.053 3.947 17 C -0.171 4.171 18 C -0.192 4.192 19 S 0.159 5.841 20 C 0.168 3.832 21 N -0.583 5.583 22 C -0.252 4.252 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.899 5.899 26 Si 0.899 3.101 27 H -0.277 1.277 28 H -0.291 1.291 29 H -0.289 1.289 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.390 0.610 38 H 0.149 0.851 39 H 0.177 0.823 40 H 0.146 0.854 41 H 0.018 0.982 42 H 0.093 0.907 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.188 -3.943 9.704 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.013 3.987 7 H 0.103 0.897 8 N -0.363 5.363 9 C 0.371 3.629 10 O -0.398 6.398 11 C -0.341 4.341 12 C -0.075 4.075 13 C -0.086 4.086 14 N -0.159 5.159 15 H 0.257 0.743 16 C -0.081 4.081 17 C -0.201 4.201 18 C -0.313 4.313 19 S 0.422 5.578 20 C 0.041 3.959 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.543 5.543 26 Si 0.729 3.271 27 H -0.202 1.202 28 H -0.218 1.218 29 H -0.215 1.215 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.224 0.776 38 H 0.167 0.833 39 H 0.194 0.806 40 H 0.164 0.836 41 H 0.036 0.964 42 H 0.112 0.888 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 16.491 -3.311 9.894 19.514 hybrid contribution 0.260 -1.815 -1.649 2.466 sum 16.750 -5.126 8.245 19.361 Atomic orbital electron populations 1.21795 0.95987 1.01394 1.00177 1.20491 0.93058 0.93586 0.87060 0.95734 1.22046 0.94196 1.01357 0.98943 1.21691 0.97474 0.99701 0.96670 1.22051 0.77058 1.01132 0.98494 0.89744 1.45935 1.08894 1.26095 1.55342 1.16787 0.84866 0.82111 0.79169 1.90880 1.61888 1.42127 1.44945 1.23922 0.97511 1.02043 1.10651 1.19251 0.89180 0.99502 0.99583 1.18008 0.88750 0.95894 1.05967 1.41899 1.03699 1.23794 1.46465 0.74330 1.21832 0.91277 0.94590 1.00376 1.20107 0.90998 1.00988 1.08016 1.23174 0.98783 1.00860 1.08531 1.83647 0.92312 1.25603 1.56248 1.21069 0.83600 0.96968 0.94224 1.44014 1.02548 1.64739 1.19326 1.19167 0.95129 1.37931 0.85973 0.91202 1.25087 0.97795 0.99306 0.97061 1.70016 1.24077 1.43581 1.16626 0.86276 0.79602 0.79716 0.81493 1.20216 1.21833 1.21549 0.94351 0.92008 0.92805 0.92626 0.92038 0.92188 0.92958 0.77640 0.83296 0.80629 0.83635 0.96387 0.88848 0.93796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.95 37.16 0.30 -2.28 16 2 C 0.16 3.41 3.49 -67.60 -0.24 3.17 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -2.16 5.37 -26.61 -0.14 -2.30 16 5 C -0.12 -1.94 5.35 -26.69 -0.14 -2.08 16 6 C 0.12 2.35 2.60 -67.80 -0.18 2.17 16 7 H 0.08 1.90 7.58 -51.93 -0.39 1.50 16 8 N -0.71 -12.52 5.07 -55.07 -0.28 -12.80 16 9 C 0.59 11.15 7.74 -12.97 -0.10 11.05 16 10 O -0.52 -12.07 16.43 5.16 0.08 -11.98 16 11 C -0.22 -3.47 6.38 -37.18 -0.24 -3.71 16 12 C -0.04 -0.57 9.88 -40.23 -0.40 -0.97 16 13 C 0.03 0.35 7.67 -84.02 -0.64 -0.30 16 14 N -0.56 -4.86 6.21 -10.90 -0.07 -4.93 16 15 H 0.42 2.38 8.96 -40.82 -0.37 2.01 16 16 C 0.05 0.39 11.85 -16.93 -0.20 0.19 16 17 C -0.17 -1.64 10.84 -39.61 -0.43 -2.07 16 18 C -0.19 -2.38 7.31 -38.29 -0.28 -2.66 16 19 S 0.16 2.02 22.29 -107.50 -2.40 -0.38 16 20 C 0.17 4.16 4.86 -3.71 -0.02 4.14 16 21 N -0.58 -14.69 2.99 -164.78 -0.49 -15.18 16 22 C -0.25 -6.99 8.58 -15.06 -0.13 -7.11 16 23 H 0.07 1.89 6.24 -52.49 -0.33 1.56 16 24 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 25 N -0.90 -27.02 11.23 55.49 0.62 -26.40 16 26 Si 0.90 22.64 29.58 -169.99 -5.03 17.61 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 32 H 0.05 1.04 7.42 -51.93 -0.39 0.65 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.39 5.69 7.66 -40.82 -0.31 5.37 16 38 H 0.15 2.11 8.00 -52.49 -0.42 1.69 16 39 H 0.18 0.57 8.06 -52.48 -0.42 0.14 16 40 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 41 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 42 H 0.09 2.72 6.15 -51.93 -0.32 2.40 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -34.55 361.06 -10.90 -45.46 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.86 Total: 5.81 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.93 Total: -2.65 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.22 Total: -59.31 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.40 Total: -0.38 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.55 -10.90 -45.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072029957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.170 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds