Wall clock time and date at job start Tue Mar 31 2020 18:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.58519 * 2 1 4 4 C 1.53191 * 109.58469 * 120.27770 * 2 1 3 5 5 C 1.53041 * 109.31394 * 174.56870 * 4 2 1 6 6 C 1.53040 * 109.53557 * 298.63509 * 5 4 2 7 7 H 1.08993 * 109.50100 * 301.41547 * 6 5 4 8 8 N 1.46507 * 109.49753 * 181.31236 * 6 5 4 9 9 C 1.34776 * 119.99642 * 155.00140 * 8 6 5 10 10 O 1.21733 * 120.00214 * 359.97438 * 9 8 6 11 11 C 1.46409 * 119.99923 * 180.02562 * 9 8 6 12 12 C 1.35778 * 124.96385 * 180.02562 * 11 9 8 13 13 C 1.38866 * 115.18719 * 179.97438 * 12 11 9 14 14 N 1.39747 * 139.91191 * 179.97438 * 13 12 11 15 15 H 0.97001 * 125.63618 * 0.02562 * 14 13 12 16 16 C 1.36213 * 108.73203 * 179.97438 * 14 13 12 17 17 C 1.34505 * 109.29728 * 0.02562 * 16 14 13 18 18 C 1.38244 * 113.39544 * 359.97438 * 13 12 11 19 19 S 1.75625 * 124.95609 * 359.69011 * 11 9 8 20 20 C 1.53197 * 109.31384 * 61.36343 * 6 5 4 21 21 N 1.46921 * 109.70759 * 239.63920 * 2 1 3 22 22 C 1.36942 * 120.62940 * 6.51290 * 21 2 1 23 23 H 1.08001 * 119.99595 * 330.20678 * 22 21 2 24 24 C 1.38810 * 120.00016 * 150.20036 * 22 21 2 25 25 N 1.31620 * 119.99942 * 344.47828 * 24 22 21 26 26 Si 1.86795 * 119.99872 * 164.47425 * 24 22 21 27 27 H 1.48502 * 109.47291 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46879 * 120.00159 * 26 24 22 29 29 H 1.48499 * 109.47336 * 240.00094 * 26 24 22 30 30 H 1.09000 * 109.47586 * 300.00585 * 1 2 3 31 31 H 1.09001 * 109.46932 * 60.00680 * 1 2 3 32 32 H 1.09003 * 109.47027 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.49925 * 294.51830 * 4 2 1 34 34 H 1.08999 * 109.49936 * 54.61865 * 4 2 1 35 35 H 1.09006 * 109.45921 * 58.65326 * 5 4 2 36 36 H 1.08992 * 109.46659 * 178.61377 * 5 4 2 37 37 H 0.96996 * 119.99717 * 335.00126 * 8 6 5 38 38 H 1.08002 * 122.40168 * 359.93489 * 12 11 9 39 39 H 1.08006 * 125.35060 * 179.97438 * 16 14 13 40 40 H 1.08003 * 126.07307 * 180.02562 * 17 16 14 41 41 H 1.09011 * 109.58304 * 65.15280 * 20 6 5 42 42 H 1.08994 * 109.58664 * 185.43222 * 20 6 5 43 43 H 0.97005 * 119.99905 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8432 1.1731 6 6 3.9604 -1.6607 -0.0596 7 1 3.5037 -2.6487 -0.0015 8 7 5.4181 -1.7974 -0.1118 9 6 5.9744 -2.8394 -0.7608 10 8 5.2657 -3.6672 -1.3032 11 6 7.4312 -2.9762 -0.8126 12 6 8.0965 -3.9820 -1.4365 13 6 9.4812 -3.9119 -1.3590 14 7 10.6126 -4.6162 -1.7795 15 1 10.6077 -5.4347 -2.3001 16 6 11.7235 -3.9629 -1.3386 17 6 11.3519 -2.8680 -0.6514 18 6 9.9366 -2.8152 -0.6512 19 16 8.5734 -1.8588 -0.0838 20 6 3.4686 -0.9436 -1.3209 21 7 2.0254 -0.6991 -1.1935 22 6 1.1585 -1.1153 -2.1684 23 1 0.1448 -1.3840 -1.9107 24 6 1.5828 -1.1917 -3.4879 25 7 2.6926 -0.5887 -3.8583 26 14 0.5787 -2.1503 -4.7378 27 1 -0.6163 -2.7296 -4.0733 28 1 0.1455 -1.2396 -5.8280 29 1 1.4082 -3.2431 -5.3060 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.7637 -0.1653 2.1372 34 1 1.6049 -1.7245 1.2923 35 1 4.0045 0.1531 1.1023 36 1 3.9381 -1.3388 2.0705 37 1 5.9828 -1.1379 0.3207 38 1 7.5854 -4.7796 -1.9552 39 1 12.7426 -4.2755 -1.5126 40 1 12.0150 -2.1553 -0.1836 41 1 3.9921 0.0064 -1.4286 42 1 3.6600 -1.5674 -2.1940 43 1 2.9889 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072029957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:12 Heat of formation + Delta-G solvation = 31.900968 kcal Electronic energy + Delta-G solvation = -26092.040487 eV Core-core repulsion = 22457.034433 eV Total energy + Delta-G solvation = -3635.006055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.12910 -40.97762 -39.26689 -36.26360 -35.89186 -34.66807 -32.42474 -31.84301 -31.73863 -29.31574 -27.70299 -26.78520 -24.95432 -23.97247 -22.87090 -22.04712 -21.61548 -21.26444 -20.47305 -19.41335 -18.33831 -17.89421 -17.33587 -16.80942 -16.49228 -16.16604 -15.79776 -15.57382 -15.39057 -15.28405 -14.99601 -14.98061 -14.48255 -14.37319 -14.12930 -13.67455 -13.50574 -13.10392 -12.98261 -12.79840 -12.72388 -12.59429 -12.50882 -12.28647 -12.12396 -12.00418 -11.98481 -11.66719 -11.45597 -11.17550 -11.07101 -10.67321 -10.55447 -10.19146 -9.14445 -8.63746 -8.61056 -7.85607 -5.32218 -0.51941 0.40873 0.93311 1.37404 1.39817 1.43848 1.52146 1.73333 1.90443 2.16719 2.30859 2.50523 3.30972 3.60965 3.76866 3.92582 3.97532 4.08510 4.15833 4.21179 4.24956 4.38353 4.54806 4.58920 4.71054 4.75514 4.81216 4.88838 4.95978 5.01339 5.05663 5.06974 5.17923 5.28284 5.31215 5.40743 5.55672 5.56430 5.60984 5.70749 5.77567 5.78785 6.39361 6.48077 6.60396 7.11666 7.17534 7.89314 8.39355 9.19890 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015521 B = 0.003234 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.581223 B = 8656.183221 C = 9946.253432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.022 0.978 4 C -0.117 4.117 5 C -0.109 4.109 6 C 0.131 3.869 7 H 0.056 0.944 8 N -0.703 5.703 9 C 0.584 3.416 10 O -0.578 6.578 11 C -0.269 4.269 12 C -0.029 4.029 13 C -0.008 4.008 14 N -0.547 5.547 15 H 0.434 0.566 16 C 0.091 3.909 17 C -0.197 4.197 18 C -0.195 4.195 19 S 0.186 5.814 20 C 0.181 3.819 21 N -0.602 5.602 22 C -0.249 4.249 23 H 0.076 0.924 24 C -0.054 4.054 25 N -0.934 5.934 26 Si 0.956 3.044 27 H -0.261 1.261 28 H -0.288 1.288 29 H -0.302 1.302 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.407 0.593 38 H 0.139 0.861 39 H 0.229 0.771 40 H 0.169 0.831 41 H -0.002 1.002 42 H 0.040 0.960 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.505 -3.923 12.016 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.040 0.960 4 C -0.156 4.156 5 C -0.147 4.147 6 C 0.026 3.974 7 H 0.074 0.926 8 N -0.353 5.353 9 C 0.371 3.629 10 O -0.460 6.460 11 C -0.389 4.389 12 C -0.066 4.066 13 C -0.120 4.120 14 N -0.149 5.149 15 H 0.274 0.726 16 C -0.044 4.044 17 C -0.226 4.226 18 C -0.318 4.318 19 S 0.449 5.551 20 C 0.054 3.946 21 N -0.326 5.326 22 C -0.380 4.380 23 H 0.094 0.906 24 C -0.250 4.250 25 N -0.581 5.581 26 Si 0.785 3.215 27 H -0.185 1.185 28 H -0.214 1.214 29 H -0.229 1.229 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.243 0.757 38 H 0.156 0.844 39 H 0.246 0.754 40 H 0.187 0.813 41 H 0.016 0.984 42 H 0.059 0.941 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 18.785 -3.269 12.257 22.667 hybrid contribution -0.237 -1.847 -2.354 3.001 sum 18.548 -5.116 9.903 21.640 Atomic orbital electron populations 1.21727 0.94600 1.01175 1.01112 1.20826 0.94388 0.93410 0.86665 0.95995 1.21952 0.94196 1.01023 0.98426 1.21678 0.97401 0.99952 0.95684 1.21620 0.78198 0.99538 0.98082 0.92590 1.45750 1.08167 1.26296 1.55115 1.17290 0.86315 0.81396 0.77891 1.90829 1.63694 1.44123 1.47330 1.23538 0.96106 1.04774 1.14445 1.19334 0.90584 0.98529 0.98155 1.17871 0.88625 0.97479 1.08061 1.42060 1.02924 1.24075 1.45880 0.72574 1.22746 0.92642 0.92495 0.96481 1.20578 0.89672 1.02775 1.09548 1.23647 1.00181 1.00322 1.07659 1.83317 0.91532 1.24548 1.55669 1.20726 0.83955 0.95229 0.94712 1.44310 1.02336 1.65646 1.20345 1.19516 0.95573 1.36317 0.86552 0.90643 1.25830 0.99115 1.00934 0.99074 1.70179 1.25944 1.45663 1.16291 0.85355 0.78562 0.78074 0.79475 1.18516 1.21447 1.22929 0.90158 0.94317 0.93532 0.88340 0.92775 0.90799 0.89516 0.75683 0.84352 0.75423 0.81340 0.98420 0.94131 0.94710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 7.95 71.98 0.57 -4.13 16 2 C 0.15 6.18 3.49 44.98 0.16 6.34 16 3 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.12 -3.72 5.37 30.67 0.16 -3.55 16 5 C -0.11 -3.40 5.35 30.62 0.16 -3.24 16 6 C 0.13 5.44 2.60 45.07 0.12 5.55 16 7 H 0.06 2.65 7.58 -2.39 -0.02 2.63 16 8 N -0.70 -25.76 5.07 -446.36 -2.27 -28.02 16 9 C 0.58 23.84 7.74 86.37 0.67 24.51 16 10 O -0.58 -29.25 16.43 -4.45 -0.07 -29.32 16 11 C -0.27 -8.91 6.38 23.83 0.15 -8.76 16 12 C -0.03 -0.90 9.88 21.85 0.22 -0.68 16 13 C -0.01 -0.18 7.67 38.03 0.29 0.11 16 14 N -0.55 -7.98 6.21 -188.39 -1.17 -9.14 16 15 H 0.43 3.70 8.96 -92.71 -0.83 2.87 16 16 C 0.09 0.92 11.85 83.16 0.99 1.91 16 17 C -0.20 -3.04 10.84 22.25 0.24 -2.80 16 18 C -0.20 -4.53 7.31 23.11 0.17 -4.36 16 19 S 0.19 4.67 22.29 -56.49 -1.26 3.41 16 20 C 0.18 9.46 4.86 86.36 0.42 9.88 16 21 N -0.60 -31.34 2.99 -675.23 -2.02 -33.36 16 22 C -0.25 -14.26 8.58 84.03 0.72 -13.54 16 23 H 0.08 4.15 6.24 -2.91 -0.02 4.13 16 24 C -0.05 -3.26 4.94 84.86 0.42 -2.85 16 25 N -0.93 -59.57 11.23 21.65 0.24 -59.32 16 26 Si 0.96 48.55 29.58 68.60 2.03 50.58 16 27 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 28 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 29 H -0.30 -15.80 7.11 99.48 0.71 -15.10 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.04 1.56 7.66 -2.39 -0.02 1.54 16 32 H 0.05 1.74 7.42 -2.39 -0.02 1.72 16 33 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.41 11.98 7.66 -92.71 -0.71 11.27 16 38 H 0.14 4.30 8.00 -2.91 -0.02 4.28 16 39 H 0.23 -0.12 8.06 -2.91 -0.02 -0.14 16 40 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 42 H 0.04 2.55 6.15 -2.39 -0.01 2.53 16 43 H 0.24 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -83.13 361.06 0.46 -82.67 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -0.48 Total: 18.11 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 5.46 Total: 4.40 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -5.21 Total: -129.85 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.07 Total: -29.32 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -1.26 Total: 3.41 kcal Total: -83.13 0.46 -82.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072029957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.569 kcal (2) G-P(sol) polarization free energy of solvation -83.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds