Wall clock time and date at job start Tue Mar 31 2020 18:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.58163 * 2 1 4 4 C 1.53185 * 109.58444 * 120.28178 * 2 1 3 5 5 C 1.53049 * 109.31109 * 174.42488 * 4 2 1 6 6 C 1.53047 * 109.53603 * 298.63611 * 5 4 2 7 7 H 1.08999 * 109.49467 * 181.34790 * 6 5 4 8 8 N 1.46505 * 109.49417 * 301.41185 * 6 5 4 9 9 C 1.34775 * 119.99553 * 205.27558 * 8 6 5 10 10 O 1.21732 * 119.99897 * 359.72811 * 9 8 6 11 11 C 1.46410 * 120.00157 * 179.72753 * 9 8 6 12 12 C 1.35774 * 124.96411 * 179.72251 * 11 9 8 13 13 C 1.38874 * 115.18704 * 179.78431 * 12 11 9 14 14 N 1.39740 * 139.91153 * 180.12390 * 13 12 11 15 15 H 0.97001 * 125.63611 * 0.33359 * 14 13 12 16 16 C 1.36216 * 108.73290 * 180.36064 * 14 13 12 17 17 C 1.34515 * 109.29607 * 359.97438 * 16 14 13 18 18 C 1.38241 * 113.39059 * 0.50001 * 13 12 11 19 19 S 1.75618 * 124.95482 * 0.02562 * 11 9 8 20 20 C 1.53195 * 109.31178 * 61.36474 * 6 5 4 21 21 N 1.46925 * 109.58606 * 239.57263 * 2 1 3 22 22 C 1.36937 * 120.63429 * 6.62542 * 21 2 1 23 23 H 1.07999 * 119.99722 * 330.18277 * 22 21 2 24 24 C 1.38810 * 119.99986 * 150.18083 * 22 21 2 25 25 N 1.31617 * 120.00240 * 344.47857 * 24 22 21 26 26 Si 1.86799 * 119.99794 * 164.47808 * 24 22 21 27 27 H 1.48496 * 109.47268 * 90.00022 * 26 24 22 28 28 H 1.48500 * 109.47282 * 210.00396 * 26 24 22 29 29 H 1.48499 * 109.47222 * 329.99983 * 26 24 22 30 30 H 1.08996 * 109.47328 * 299.71438 * 1 2 3 31 31 H 1.09000 * 109.46923 * 59.72136 * 1 2 3 32 32 H 1.09005 * 109.46773 * 179.71522 * 1 2 3 33 33 H 1.09000 * 109.50320 * 54.47734 * 4 2 1 34 34 H 1.09003 * 109.49915 * 294.37451 * 4 2 1 35 35 H 1.08997 * 109.45940 * 178.61578 * 5 4 2 36 36 H 1.09001 * 109.45661 * 58.65616 * 5 4 2 37 37 H 0.96997 * 120.00202 * 25.00047 * 8 6 5 38 38 H 1.08004 * 122.40124 * 359.97438 * 12 11 9 39 39 H 1.07997 * 125.35681 * 180.02562 * 16 14 13 40 40 H 1.07998 * 126.07523 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.58696 * 65.15315 * 20 6 5 42 42 H 1.08999 * 109.58295 * 185.57739 * 20 6 5 43 43 H 0.97001 * 119.99860 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5676 -0.8464 1.1712 6 6 3.9570 -1.6657 -0.0614 7 1 5.0413 -1.7701 -0.1011 8 7 3.3406 -2.9924 0.0186 9 6 3.9003 -4.0353 -0.6259 10 8 4.9152 -3.8740 -1.2785 11 6 3.2877 -5.3624 -0.5412 12 6 3.7616 -6.4786 -1.1521 13 6 3.0222 -7.6330 -0.9300 14 7 3.0264 -8.9877 -1.2726 15 1 3.6853 -9.4269 -1.8328 16 6 1.9521 -9.5896 -0.6904 17 6 1.2582 -8.6766 0.0128 18 6 1.9169 -7.4303 -0.1249 19 16 1.8285 -5.7414 0.3595 20 6 3.4651 -0.9485 -1.3226 21 7 2.0226 -0.7010 -1.1936 22 6 1.1538 -1.1155 -2.1676 23 1 0.1397 -1.3817 -1.9088 24 6 1.5767 -1.1932 -3.4874 25 7 2.6875 -0.5931 -3.8591 26 14 0.5691 -2.1497 -4.7361 27 1 -0.4245 -1.2449 -5.3681 28 1 1.4694 -2.7025 -5.7798 29 1 -0.1388 -3.2623 -4.0533 30 1 -0.3634 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 -1.0277 -0.0051 33 1 1.6031 -1.7237 1.2935 34 1 1.7660 -0.1641 2.1370 35 1 3.9378 -1.3421 2.0686 36 1 4.0061 0.1489 1.0992 37 1 2.5320 -3.1209 0.5387 38 1 4.6514 -6.4698 -1.7641 39 1 1.6978 -10.6354 -0.7786 40 1 0.3585 -8.8611 0.5811 41 1 3.9904 0.0004 -1.4317 42 1 3.6519 -1.5744 -2.1952 43 1 2.9828 -0.6471 -4.7815 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072029958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:18 Heat of formation + Delta-G solvation = 58.022982 kcal Electronic energy + Delta-G solvation = -26935.252831 eV Core-core repulsion = 23301.379512 eV Total energy + Delta-G solvation = -3633.873319 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.18194 -39.44266 -37.57806 -34.93328 -34.04762 -32.68614 -31.02877 -30.75337 -29.85686 -28.07667 -26.15280 -24.96890 -23.81329 -22.13939 -21.77165 -20.85655 -20.38939 -19.59508 -18.79057 -18.27430 -16.75081 -16.23276 -15.46880 -15.34818 -15.04601 -14.75933 -14.27188 -14.22277 -13.88999 -13.84141 -13.54157 -13.45860 -13.14877 -12.80160 -12.70265 -12.44294 -11.91679 -11.90501 -11.37554 -11.19219 -11.11723 -10.92106 -10.84952 -10.77965 -10.64519 -10.34044 -10.28805 -9.91795 -9.66809 -9.59692 -9.44152 -9.38355 -8.41076 -8.39182 -8.04771 -7.60381 -6.53848 -5.69651 -3.13464 0.69930 1.55330 2.09997 2.45377 2.65809 2.94370 3.42177 3.50364 3.51860 3.63600 3.82472 4.55955 4.81857 4.89058 5.05440 5.34614 5.37380 5.41019 5.45650 5.50595 5.55063 5.64292 5.78285 5.96758 6.04779 6.06785 6.15332 6.20705 6.36733 6.39579 6.47031 6.48546 6.55816 6.64564 6.70216 6.71618 6.92066 7.09234 7.16411 7.33373 7.41576 7.73077 7.89901 8.07551 8.54959 8.73724 9.29241 9.93819 10.49959 11.38563 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.004581 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.701172 B = 6110.392705 C = 6948.805228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.078 0.922 8 N -0.692 5.692 9 C 0.589 3.411 10 O -0.536 6.536 11 C -0.215 4.215 12 C -0.045 4.045 13 C 0.029 3.971 14 N -0.559 5.559 15 H 0.418 0.582 16 C 0.050 3.950 17 C -0.171 4.171 18 C -0.194 4.194 19 S 0.166 5.834 20 C 0.162 3.838 21 N -0.582 5.582 22 C -0.249 4.249 23 H 0.068 0.932 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.892 3.108 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.394 0.606 38 H 0.148 0.852 39 H 0.176 0.824 40 H 0.145 0.855 41 H 0.027 0.973 42 H 0.095 0.905 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -13.950 11.081 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.171 4.171 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.096 0.904 8 N -0.342 5.342 9 C 0.374 3.626 10 O -0.416 6.416 11 C -0.336 4.336 12 C -0.081 4.081 13 C -0.085 4.085 14 N -0.160 5.160 15 H 0.255 0.745 16 C -0.083 4.083 17 C -0.200 4.200 18 C -0.316 4.316 19 S 0.429 5.571 20 C 0.036 3.964 21 N -0.306 5.306 22 C -0.378 4.378 23 H 0.085 0.915 24 C -0.191 4.191 25 N -0.543 5.543 26 Si 0.722 3.278 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.229 0.771 38 H 0.165 0.835 39 H 0.193 0.807 40 H 0.163 0.837 41 H 0.045 0.955 42 H 0.114 0.886 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.750 -12.955 11.247 17.172 hybrid contribution 0.320 -1.679 -1.763 2.456 sum -0.430 -14.634 9.484 17.444 Atomic orbital electron populations 1.21800 0.96109 1.01310 1.00124 1.20458 0.92922 0.93599 0.87136 0.95744 1.22084 0.95135 1.00694 0.99203 1.21703 0.97081 1.00183 0.96753 1.21847 0.97020 0.81353 0.98486 0.90385 1.45699 1.28960 1.08498 1.50997 1.16719 0.83869 0.82338 0.79716 1.90809 1.24977 1.84509 1.41278 1.23923 1.02454 0.97997 1.09208 1.19201 1.00541 0.88010 1.00345 1.18012 0.99657 0.85757 1.05101 1.41869 1.24505 1.06039 1.43592 0.74455 1.21798 0.89119 0.98662 0.98729 1.20099 1.03014 0.89396 1.07539 1.23208 1.01727 0.98952 1.07736 1.83740 1.24311 0.97910 1.51091 1.21174 0.83859 0.97060 0.94336 1.44037 1.02675 1.64692 1.19169 1.19051 0.94974 1.37820 0.85992 0.91482 1.25035 0.97705 0.99430 0.96965 1.69985 1.23936 1.43740 1.16638 0.86455 0.79493 0.80202 0.81641 1.21487 1.21693 1.20426 0.94437 0.92059 0.92884 0.92758 0.92738 0.92937 0.90935 0.77119 0.83452 0.80731 0.83710 0.95516 0.88641 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.95 37.16 0.30 -2.19 16 2 C 0.17 3.29 3.50 -67.60 -0.24 3.05 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.13 5.21 -26.61 -0.14 -2.27 16 5 C -0.12 -1.91 5.59 -26.68 -0.15 -2.06 16 6 C 0.12 2.31 2.81 -67.80 -0.19 2.12 16 7 H 0.08 1.54 7.57 -51.93 -0.39 1.15 16 8 N -0.69 -13.12 4.91 -55.07 -0.27 -13.39 16 9 C 0.59 11.93 7.74 -12.97 -0.10 11.83 16 10 O -0.54 -12.50 16.43 5.16 0.08 -12.41 16 11 C -0.22 -3.78 6.38 -37.18 -0.24 -4.01 16 12 C -0.05 -0.72 9.88 -40.23 -0.40 -1.12 16 13 C 0.03 0.40 7.67 -84.02 -0.64 -0.24 16 14 N -0.56 -5.60 6.21 -10.90 -0.07 -5.67 16 15 H 0.42 2.84 8.96 -40.82 -0.37 2.48 16 16 C 0.05 0.44 11.85 -16.92 -0.20 0.24 16 17 C -0.17 -1.90 10.85 -39.60 -0.43 -2.33 16 18 C -0.19 -2.76 7.31 -38.29 -0.28 -3.04 16 19 S 0.17 2.48 22.29 -107.50 -2.40 0.09 16 20 C 0.16 3.91 4.89 -3.71 -0.02 3.90 16 21 N -0.58 -14.00 2.90 -164.77 -0.48 -14.48 16 22 C -0.25 -6.64 8.58 -15.06 -0.13 -6.77 16 23 H 0.07 1.76 6.23 -52.49 -0.33 1.43 16 24 C 0.01 0.22 4.94 -17.43 -0.09 0.13 16 25 N -0.90 -26.70 11.23 55.49 0.62 -26.08 16 26 Si 0.89 22.47 29.58 -169.99 -5.03 17.45 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 29 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 32 H 0.05 0.98 7.40 -51.93 -0.38 0.59 16 33 H 0.05 0.88 6.40 -51.93 -0.33 0.55 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.39 6.86 5.83 -40.82 -0.24 6.62 16 38 H 0.15 2.26 8.00 -52.48 -0.42 1.84 16 39 H 0.18 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 2.72 6.14 -51.93 -0.32 2.40 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -33.51 357.50 -10.78 -44.30 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.69 Total: 7.59 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -2.94 Total: -2.78 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.19 Total: -59.62 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.41 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.45 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.40 Total: 0.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.51 -10.78 -44.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072029958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.319 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds