Wall clock time and date at job start Tue Mar 31 2020 18:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.58163 * 2 1 4 4 C 1.53185 * 109.58444 * 120.28178 * 2 1 3 5 5 C 1.53049 * 109.31109 * 174.42488 * 4 2 1 6 6 C 1.53047 * 109.53603 * 298.63611 * 5 4 2 7 7 H 1.08999 * 109.49467 * 181.34790 * 6 5 4 8 8 N 1.46505 * 109.49417 * 301.41185 * 6 5 4 9 9 C 1.34775 * 119.99553 * 205.27558 * 8 6 5 10 10 O 1.21732 * 119.99897 * 359.72811 * 9 8 6 11 11 C 1.46410 * 120.00157 * 179.72753 * 9 8 6 12 12 C 1.35774 * 124.96411 * 179.72251 * 11 9 8 13 13 C 1.38874 * 115.18704 * 179.78431 * 12 11 9 14 14 N 1.39740 * 139.91153 * 180.12390 * 13 12 11 15 15 H 0.97001 * 125.63611 * 0.33359 * 14 13 12 16 16 C 1.36216 * 108.73290 * 180.36064 * 14 13 12 17 17 C 1.34515 * 109.29607 * 359.97438 * 16 14 13 18 18 C 1.38241 * 113.39059 * 0.50001 * 13 12 11 19 19 S 1.75618 * 124.95482 * 0.02562 * 11 9 8 20 20 C 1.53195 * 109.31178 * 61.36474 * 6 5 4 21 21 N 1.46925 * 109.58606 * 239.57263 * 2 1 3 22 22 C 1.36937 * 120.63429 * 6.62542 * 21 2 1 23 23 H 1.07999 * 119.99722 * 330.18277 * 22 21 2 24 24 C 1.38810 * 119.99986 * 150.18083 * 22 21 2 25 25 N 1.31617 * 120.00240 * 344.47857 * 24 22 21 26 26 Si 1.86799 * 119.99794 * 164.47808 * 24 22 21 27 27 H 1.48496 * 109.47268 * 90.00022 * 26 24 22 28 28 H 1.48500 * 109.47282 * 210.00396 * 26 24 22 29 29 H 1.48499 * 109.47222 * 329.99983 * 26 24 22 30 30 H 1.08996 * 109.47328 * 299.71438 * 1 2 3 31 31 H 1.09000 * 109.46923 * 59.72136 * 1 2 3 32 32 H 1.09005 * 109.46773 * 179.71522 * 1 2 3 33 33 H 1.09000 * 109.50320 * 54.47734 * 4 2 1 34 34 H 1.09003 * 109.49915 * 294.37451 * 4 2 1 35 35 H 1.08997 * 109.45940 * 178.61578 * 5 4 2 36 36 H 1.09001 * 109.45661 * 58.65616 * 5 4 2 37 37 H 0.96997 * 120.00202 * 25.00047 * 8 6 5 38 38 H 1.08004 * 122.40124 * 359.97438 * 12 11 9 39 39 H 1.07997 * 125.35681 * 180.02562 * 16 14 13 40 40 H 1.07998 * 126.07523 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.58696 * 65.15315 * 20 6 5 42 42 H 1.08999 * 109.58295 * 185.57739 * 20 6 5 43 43 H 0.97001 * 119.99860 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5676 -0.8464 1.1712 6 6 3.9570 -1.6657 -0.0614 7 1 5.0413 -1.7701 -0.1011 8 7 3.3406 -2.9924 0.0186 9 6 3.9003 -4.0353 -0.6259 10 8 4.9152 -3.8740 -1.2785 11 6 3.2877 -5.3624 -0.5412 12 6 3.7616 -6.4786 -1.1521 13 6 3.0222 -7.6330 -0.9300 14 7 3.0264 -8.9877 -1.2726 15 1 3.6853 -9.4269 -1.8328 16 6 1.9521 -9.5896 -0.6904 17 6 1.2582 -8.6766 0.0128 18 6 1.9169 -7.4303 -0.1249 19 16 1.8285 -5.7414 0.3595 20 6 3.4651 -0.9485 -1.3226 21 7 2.0226 -0.7010 -1.1936 22 6 1.1538 -1.1155 -2.1676 23 1 0.1397 -1.3817 -1.9088 24 6 1.5767 -1.1932 -3.4874 25 7 2.6875 -0.5931 -3.8591 26 14 0.5691 -2.1497 -4.7361 27 1 -0.4245 -1.2449 -5.3681 28 1 1.4694 -2.7025 -5.7798 29 1 -0.1388 -3.2623 -4.0533 30 1 -0.3634 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 -1.0277 -0.0051 33 1 1.6031 -1.7237 1.2935 34 1 1.7660 -0.1641 2.1370 35 1 3.9378 -1.3421 2.0686 36 1 4.0061 0.1489 1.0992 37 1 2.5320 -3.1209 0.5387 38 1 4.6514 -6.4698 -1.7641 39 1 1.6978 -10.6354 -0.7786 40 1 0.3585 -8.8611 0.5811 41 1 3.9904 0.0004 -1.4317 42 1 3.6519 -1.5744 -2.1952 43 1 2.9828 -0.6471 -4.7815 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072029958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:17 Heat of formation + Delta-G solvation = 35.657329 kcal Electronic energy + Delta-G solvation = -26936.222679 eV Core-core repulsion = 23301.379512 eV Total energy + Delta-G solvation = -3634.843167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11338 -41.01267 -39.19910 -36.12549 -35.73172 -34.51031 -32.40009 -31.82531 -31.73094 -29.21249 -27.80565 -26.76795 -25.06082 -23.88393 -22.92457 -22.08721 -21.70122 -20.85784 -20.42406 -19.39723 -18.21545 -17.94851 -17.12649 -16.67991 -16.47975 -16.12967 -15.82344 -15.60794 -15.40982 -15.26705 -14.97927 -14.72160 -14.45856 -14.36135 -14.01899 -13.66775 -13.64318 -12.98774 -12.96172 -12.90149 -12.62049 -12.55823 -12.48551 -12.42362 -12.13853 -12.08321 -11.95667 -11.58022 -11.24954 -11.11829 -11.03630 -10.65731 -10.51538 -10.04473 -9.12183 -8.61799 -8.55168 -7.81790 -5.26398 -0.47930 0.43721 0.97056 1.37817 1.40984 1.41939 1.48519 1.73768 1.97277 2.23248 2.42855 2.50328 3.34500 3.64166 3.76457 3.96237 4.03014 4.09936 4.16621 4.18894 4.24103 4.49145 4.55361 4.64327 4.72037 4.80854 4.81871 4.96450 4.97395 5.03795 5.07544 5.09677 5.11661 5.26763 5.32511 5.56900 5.57919 5.61190 5.66025 5.73902 5.74727 5.79379 6.45542 6.55389 6.61948 7.19731 7.21571 7.94107 8.44842 9.23659 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.004581 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.701172 B = 6110.392705 C = 6948.805228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 H 0.017 0.983 4 C -0.121 4.121 5 C -0.111 4.111 6 C 0.126 3.874 7 H 0.069 0.931 8 N -0.685 5.685 9 C 0.583 3.417 10 O -0.583 6.583 11 C -0.265 4.265 12 C -0.034 4.034 13 C -0.006 4.006 14 N -0.547 5.547 15 H 0.434 0.566 16 C 0.091 3.909 17 C -0.198 4.198 18 C -0.198 4.198 19 S 0.176 5.824 20 C 0.173 3.827 21 N -0.595 5.595 22 C -0.234 4.234 23 H 0.075 0.925 24 C -0.053 4.053 25 N -0.936 5.936 26 Si 0.944 3.056 27 H -0.280 1.280 28 H -0.305 1.305 29 H -0.270 1.270 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.403 0.597 38 H 0.141 0.859 39 H 0.230 0.770 40 H 0.168 0.832 41 H 0.002 0.998 42 H 0.045 0.955 43 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 -16.817 13.694 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.035 0.965 4 C -0.160 4.160 5 C -0.149 4.149 6 C 0.020 3.980 7 H 0.087 0.913 8 N -0.335 5.335 9 C 0.371 3.629 10 O -0.466 6.466 11 C -0.385 4.385 12 C -0.070 4.070 13 C -0.119 4.119 14 N -0.149 5.149 15 H 0.274 0.726 16 C -0.044 4.044 17 C -0.227 4.227 18 C -0.321 4.321 19 S 0.440 5.560 20 C 0.046 3.954 21 N -0.319 5.319 22 C -0.365 4.365 23 H 0.093 0.907 24 C -0.248 4.248 25 N -0.583 5.583 26 Si 0.773 3.227 27 H -0.207 1.207 28 H -0.232 1.232 29 H -0.195 1.195 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.239 0.761 38 H 0.159 0.841 39 H 0.247 0.753 40 H 0.185 0.815 41 H 0.019 0.981 42 H 0.063 0.937 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.960 -15.810 13.905 21.262 hybrid contribution 0.948 -0.968 -2.541 2.880 sum -2.012 -16.778 11.364 20.364 Atomic orbital electron populations 1.21730 0.94674 1.01313 1.00895 1.20774 0.94225 0.93265 0.86849 0.96501 1.21985 0.94727 1.00900 0.98416 1.21691 0.97357 1.00052 0.95801 1.21608 0.96487 0.81821 0.98081 0.91252 1.45607 1.29150 1.07951 1.50761 1.17186 0.83370 0.83627 0.78741 1.90762 1.27073 1.85508 1.43256 1.23631 1.04982 0.97014 1.12840 1.19319 1.00050 0.88772 0.98891 1.17891 1.00049 0.87106 1.06890 1.42025 1.25188 1.04507 1.43172 0.72552 1.22728 0.86507 1.00365 0.94803 1.20574 1.04532 0.88320 1.09277 1.23650 1.02046 0.99285 1.07082 1.83435 1.22801 0.99091 1.50714 1.20834 0.84328 0.95353 0.94923 1.44255 1.02193 1.65415 1.20032 1.19375 0.95315 1.35479 0.86328 0.90747 1.25696 0.98921 1.01226 0.98911 1.70153 1.25892 1.46123 1.16109 0.85613 0.78142 0.79352 0.79578 1.20695 1.23234 1.19492 0.90451 0.94573 0.93138 0.92395 0.88765 0.89589 0.90289 0.76065 0.84122 0.75331 0.81476 0.98053 0.93670 0.94886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 7.95 71.98 0.57 -3.87 16 2 C 0.15 5.94 3.50 44.97 0.16 6.09 16 3 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 4 C -0.12 -3.57 5.21 30.67 0.16 -3.41 16 5 C -0.11 -3.34 5.59 30.63 0.17 -3.17 16 6 C 0.13 5.04 2.81 45.07 0.13 5.16 16 7 H 0.07 2.89 7.57 -2.39 -0.02 2.87 16 8 N -0.69 -26.60 4.91 -446.35 -2.19 -28.80 16 9 C 0.58 24.93 7.74 86.37 0.67 25.60 16 10 O -0.58 -29.25 16.43 -4.45 -0.07 -29.32 16 11 C -0.26 -9.62 6.38 23.83 0.15 -9.47 16 12 C -0.03 -1.11 9.88 21.85 0.22 -0.90 16 13 C -0.01 -0.17 7.67 38.03 0.29 0.12 16 14 N -0.55 -9.13 6.21 -188.38 -1.17 -10.30 16 15 H 0.43 4.44 8.96 -92.71 -0.83 3.61 16 16 C 0.09 1.12 11.85 83.16 0.99 2.11 16 17 C -0.20 -3.62 10.85 22.26 0.24 -3.38 16 18 C -0.20 -5.24 7.31 23.11 0.17 -5.07 16 19 S 0.18 5.17 22.29 -56.49 -1.26 3.91 16 20 C 0.17 8.79 4.89 86.36 0.42 9.21 16 21 N -0.60 -29.24 2.90 -675.22 -1.96 -31.20 16 22 C -0.23 -12.80 8.58 84.03 0.72 -12.07 16 23 H 0.07 3.90 6.23 -2.91 -0.02 3.89 16 24 C -0.05 -3.09 4.94 84.86 0.42 -2.67 16 25 N -0.94 -58.92 11.23 21.65 0.24 -58.68 16 26 Si 0.94 47.75 29.58 68.60 2.03 49.78 16 27 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 28 H -0.31 -16.01 7.11 99.48 0.71 -15.31 16 29 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.40 7.67 -2.39 -0.02 1.39 16 32 H 0.05 1.75 7.40 -2.38 -0.02 1.74 16 33 H 0.06 1.69 6.40 -2.39 -0.02 1.68 16 34 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.40 13.91 5.83 -92.71 -0.54 13.37 16 38 H 0.14 4.60 8.00 -2.91 -0.02 4.58 16 39 H 0.23 0.32 8.06 -2.91 -0.02 0.29 16 40 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.04 2.76 6.14 -2.39 -0.01 2.75 16 43 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -79.80 357.50 0.78 -79.01 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.31 Total: 21.31 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 5.47 Total: 4.27 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -5.08 Total: -128.97 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.07 Total: -29.32 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.26 Total: 3.91 kcal Total: -79.80 0.78 -79.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072029958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.671 kcal (2) G-P(sol) polarization free energy of solvation -79.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds