Wall clock time and date at job start Tue Mar 31 2020 17:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47652 * 2 1 4 4 H 1.08999 * 109.87194 * 55.79835 * 3 2 1 5 5 C 1.54322 * 109.88180 * 294.78789 * 3 2 1 6 6 H 1.09006 * 110.72248 * 336.77264 * 5 3 2 7 7 N 1.46504 * 110.72345 * 99.86687 * 5 3 2 8 8 C 1.34774 * 120.00186 * 204.99679 * 7 5 3 9 9 O 1.21718 * 120.00133 * 0.02562 * 8 7 5 10 10 C 1.46497 * 119.99711 * 180.02562 * 8 7 5 11 11 C 1.36110 * 125.71079 * 180.02562 * 10 8 7 12 12 C 1.42226 * 107.62743 * 180.02562 * 11 10 8 13 13 C 1.45597 * 140.77671 * 180.33687 * 12 11 10 14 14 C 1.31816 * 114.63042 * 180.12303 * 13 12 11 15 15 S 1.75350 * 111.24268 * 359.53973 * 14 13 12 16 16 C 1.38167 * 106.99523 * 359.97438 * 12 11 10 17 17 N 1.37461 * 108.17016 * 0.02562 * 16 12 11 18 18 H 0.96993 * 125.68786 * 180.02562 * 17 16 12 19 19 C 1.55160 * 102.94221 * 218.23336 * 5 3 2 20 20 C 1.54908 * 101.58064 * 35.50184 * 19 5 3 21 21 N 1.47019 * 110.01394 * 176.89993 * 3 2 1 22 22 C 1.36937 * 125.65111 * 298.46840 * 21 3 2 23 23 H 1.08001 * 119.99297 * 345.39188 * 22 21 3 24 24 C 1.38807 * 120.00136 * 165.39120 * 22 21 3 25 25 N 1.31615 * 120.00125 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99797 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47176 * 89.99991 * 26 24 22 28 28 H 1.48498 * 109.46960 * 210.00070 * 26 24 22 29 29 H 1.48498 * 109.47137 * 329.99965 * 26 24 22 30 30 H 1.09005 * 109.46776 * 65.75719 * 1 2 3 31 31 H 1.08997 * 109.47630 * 185.75140 * 1 2 3 32 32 H 1.09000 * 109.47060 * 305.76046 * 1 2 3 33 33 H 1.09008 * 109.47132 * 239.99404 * 2 1 3 34 34 H 1.08997 * 109.46743 * 120.00251 * 2 1 3 35 35 H 0.97005 * 119.99246 * 25.00307 * 7 5 3 36 36 H 1.08004 * 126.18480 * 0.05826 * 11 10 8 37 37 H 1.07999 * 122.68635 * 359.94645 * 13 12 11 38 38 H 1.07994 * 124.37740 * 179.80370 * 14 13 12 39 39 H 1.09007 * 111.00072 * 153.57578 * 19 5 3 40 40 H 1.08997 * 111.00492 * 277.42165 * 19 5 3 41 41 H 1.08998 * 110.36581 * 204.15152 * 20 19 5 42 42 H 1.08998 * 110.36734 * 81.82623 * 20 19 5 43 43 H 0.97001 * 120.00196 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6204 1.9838 0.8478 5 6 1.6414 2.1400 -1.3175 6 1 1.4663 1.4066 -2.1047 7 7 0.4572 2.9801 -1.1216 8 6 -0.3462 3.2662 -2.1652 9 8 -0.0882 2.8263 -3.2704 10 6 -1.5300 4.1066 -1.9693 11 6 -2.4174 4.4669 -2.9365 12 6 -3.4115 5.2812 -2.3270 13 6 -4.6283 6.0108 -2.6544 14 6 -5.1838 6.6375 -1.6365 15 16 -4.2719 6.3841 -0.1602 16 6 -3.0837 5.3853 -0.9889 17 7 -1.9323 4.6663 -0.7724 18 1 -1.4784 4.5678 0.0791 19 6 2.8848 3.0105 -1.6398 20 6 4.0371 2.1040 -1.1398 21 7 3.5083 1.4568 0.0747 22 6 4.2602 0.9520 1.1018 23 1 3.7932 0.7121 2.0456 24 6 5.6225 0.7488 0.9300 25 7 6.1917 1.0417 -0.2200 26 14 6.6483 0.0608 2.3314 27 1 6.6688 -1.4217 2.2485 28 1 8.0355 0.5814 2.2315 29 1 6.0561 0.4758 3.6284 30 1 -0.3633 0.4220 -0.9371 31 1 -0.3634 -1.0224 0.1030 32 1 -0.3633 0.6006 0.8339 33 1 1.8933 -0.5140 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 0.2515 3.3304 -0.2408 36 1 -2.3746 4.1849 -3.9782 37 1 -5.0410 6.0387 -3.6520 38 1 -6.0862 7.2269 -1.7022 39 1 2.9674 3.1921 -2.7115 40 1 2.8583 3.9495 -1.0870 41 1 4.9144 2.7041 -0.8985 42 1 4.2841 1.3548 -1.8919 43 1 7.1438 0.9000 -0.3400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087679277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:16 Heat of formation + Delta-G solvation = 56.573549 kcal Electronic energy + Delta-G solvation = -26034.442382 eV Core-core repulsion = 22400.506211 eV Total energy + Delta-G solvation = -3633.936171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 4.44 seconds Orbital eigenvalues (eV) -41.50680 -39.48876 -37.68418 -35.58982 -34.15270 -32.82942 -31.79295 -30.68008 -29.40475 -28.49308 -26.58598 -24.65546 -23.49495 -22.94063 -21.86412 -20.41343 -20.31216 -20.12634 -19.38995 -19.02529 -16.92428 -16.80648 -16.01748 -15.38201 -15.24588 -14.90480 -14.76372 -14.35175 -14.19227 -14.06228 -13.77126 -13.64758 -13.34373 -12.93110 -12.72905 -12.12760 -12.10581 -11.99978 -11.88479 -11.70729 -11.22080 -11.09485 -10.94353 -10.89554 -10.68892 -10.53165 -10.42099 -10.12616 -9.96308 -9.78267 -9.72657 -9.70941 -8.81252 -8.64071 -8.51820 -7.91440 -6.86530 -5.80398 -3.17239 0.80687 1.07483 1.21238 1.71446 2.67736 2.86237 3.12875 3.35040 3.35477 3.40903 3.42454 4.40571 4.45225 4.65441 4.79132 5.14691 5.21096 5.29390 5.36429 5.43780 5.48826 5.49249 5.68373 5.73564 5.78360 5.84428 5.95015 5.99848 6.14949 6.17614 6.18938 6.34682 6.40347 6.47145 6.48497 6.61024 6.65597 6.87754 6.89181 7.06842 7.45261 7.51595 7.58101 7.73761 8.16597 8.22138 9.12726 9.73629 10.41063 11.31506 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.002505 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.396325 B =11176.587851 C =11452.217377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.033 0.967 5 C 0.138 3.862 6 H 0.099 0.901 7 N -0.711 5.711 8 C 0.586 3.414 9 O -0.523 6.523 10 C -0.001 4.001 11 C -0.072 4.072 12 C -0.163 4.163 13 C -0.069 4.069 14 C -0.224 4.224 15 S 0.129 5.871 16 C -0.010 4.010 17 N -0.525 5.525 18 H 0.421 0.579 19 C -0.157 4.157 20 C 0.174 3.826 21 N -0.593 5.593 22 C -0.230 4.230 23 H 0.075 0.925 24 C -0.002 4.002 25 N -0.915 5.915 26 Si 0.910 3.090 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.391 0.609 36 H 0.157 0.843 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.532 10.242 -1.451 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.050 0.950 5 C 0.033 3.967 6 H 0.117 0.883 7 N -0.360 5.360 8 C 0.371 3.629 9 O -0.399 6.399 10 C -0.114 4.114 11 C -0.100 4.100 12 C -0.176 4.176 13 C -0.099 4.099 14 C -0.358 4.358 15 S 0.383 5.617 16 C -0.239 4.239 17 N -0.128 5.128 18 H 0.259 0.741 19 C -0.196 4.196 20 C 0.049 3.951 21 N -0.318 5.318 22 C -0.358 4.358 23 H 0.093 0.907 24 C -0.200 4.200 25 N -0.562 5.562 26 Si 0.741 3.259 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.207 1.207 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.225 0.775 36 H 0.175 0.825 37 H 0.162 0.838 38 H 0.187 0.813 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.047 0.953 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.131 10.285 -0.665 23.511 hybrid contribution 0.853 -0.745 0.196 1.149 sum -20.278 9.541 -0.469 22.416 Atomic orbital electron populations 1.21771 0.97283 1.00592 1.00799 1.22015 0.93512 0.99100 1.02540 1.21066 0.87236 0.93408 0.92982 0.94998 1.22203 0.82935 0.92424 0.99091 0.88326 1.45988 1.27070 1.52341 1.10626 1.16920 0.81019 0.79878 0.85061 1.90874 1.72598 1.52604 1.23842 1.20208 1.00114 1.05805 0.85278 1.20740 0.92137 0.98013 0.99112 1.19389 0.99293 1.06853 0.92050 1.20342 0.93268 0.96371 0.99934 1.24860 1.06023 1.09477 0.95413 1.83945 1.17655 1.50386 1.09742 1.23553 0.95542 1.05513 0.99275 1.41445 1.20240 1.40931 1.10184 0.74077 1.23440 0.96644 0.99000 1.00551 1.21442 0.93061 0.92923 0.87683 1.44441 0.98271 1.68309 1.20773 1.18922 0.89860 1.36184 0.90856 0.90734 1.24914 0.97231 1.00805 0.97002 1.69921 1.10666 1.52603 1.22969 0.86156 0.79686 0.78898 0.81210 1.21463 1.21645 1.20658 0.93314 0.93563 0.93669 0.92216 0.91657 0.77517 0.82526 0.83751 0.81300 0.91689 0.92067 0.90722 0.95273 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.57 37.16 0.36 -1.78 16 2 C -0.13 -2.39 5.42 -26.74 -0.14 -2.54 16 3 C 0.16 3.09 2.93 -66.96 -0.20 2.89 16 4 H 0.03 0.59 7.72 -51.93 -0.40 0.19 16 5 C 0.14 2.39 2.02 -66.09 -0.13 2.25 16 6 H 0.10 1.87 7.19 -51.93 -0.37 1.49 16 7 N -0.71 -9.87 4.90 -53.38 -0.26 -10.13 16 8 C 0.59 8.64 7.78 -12.93 -0.10 8.53 16 9 O -0.52 -9.52 16.49 5.17 0.09 -9.44 16 10 C 0.00 -0.01 6.97 -82.47 -0.57 -0.59 16 11 C -0.07 -0.88 10.58 -38.82 -0.41 -1.29 16 12 C -0.16 -1.82 6.80 -105.46 -0.72 -2.54 16 13 C -0.07 -0.59 10.42 -38.54 -0.40 -0.99 16 14 C -0.22 -1.65 11.03 28.84 0.32 -1.33 16 15 S 0.13 1.05 23.24 -107.50 -2.50 -1.45 16 16 C -0.01 -0.11 8.41 -15.05 -0.13 -0.23 16 17 N -0.52 -5.34 6.08 -7.94 -0.05 -5.39 16 18 H 0.42 3.22 8.14 -40.82 -0.33 2.89 16 19 C -0.16 -2.97 6.77 -24.58 -0.17 -3.13 16 20 C 0.17 4.10 5.41 -2.53 -0.01 4.09 16 21 N -0.59 -14.26 3.13 -162.58 -0.51 -14.77 16 22 C -0.23 -6.10 9.75 -15.06 -0.15 -6.24 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C 0.00 -0.06 5.47 -17.43 -0.10 -0.16 16 25 N -0.92 -26.18 10.57 55.49 0.59 -25.59 16 26 Si 0.91 21.51 29.55 -169.99 -5.02 16.48 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 H 0.05 0.72 7.41 -51.93 -0.38 0.33 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.16 8.07 -51.92 -0.42 0.74 16 34 H 0.06 1.27 7.91 -51.93 -0.41 0.86 16 35 H 0.39 4.43 7.44 -40.82 -0.30 4.12 16 36 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 37 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.96 6.93 -51.93 -0.36 1.60 16 42 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -31.35 366.37 -10.61 -41.97 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.91 Total: 5.86 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -2.56 Total: -3.06 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.23 Total: -55.89 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.50 Total: -1.45 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.35 -10.61 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087679277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.539 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.44 seconds