Wall clock time and date at job start Tue Mar 31 2020 17:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47652 * 2 1 4 4 H 1.08999 * 109.87194 * 55.79835 * 3 2 1 5 5 C 1.54322 * 109.88180 * 294.78789 * 3 2 1 6 6 H 1.09006 * 110.72248 * 336.77264 * 5 3 2 7 7 N 1.46504 * 110.72345 * 99.86687 * 5 3 2 8 8 C 1.34774 * 120.00186 * 204.99679 * 7 5 3 9 9 O 1.21718 * 120.00133 * 0.02562 * 8 7 5 10 10 C 1.46497 * 119.99711 * 180.02562 * 8 7 5 11 11 C 1.36110 * 125.71079 * 180.02562 * 10 8 7 12 12 C 1.42226 * 107.62743 * 180.02562 * 11 10 8 13 13 C 1.45597 * 140.77671 * 180.33687 * 12 11 10 14 14 C 1.31816 * 114.63042 * 180.12303 * 13 12 11 15 15 S 1.75350 * 111.24268 * 359.53973 * 14 13 12 16 16 C 1.38167 * 106.99523 * 359.97438 * 12 11 10 17 17 N 1.37461 * 108.17016 * 0.02562 * 16 12 11 18 18 H 0.96993 * 125.68786 * 180.02562 * 17 16 12 19 19 C 1.55160 * 102.94221 * 218.23336 * 5 3 2 20 20 C 1.54908 * 101.58064 * 35.50184 * 19 5 3 21 21 N 1.47019 * 110.01394 * 176.89993 * 3 2 1 22 22 C 1.36937 * 125.65111 * 298.46840 * 21 3 2 23 23 H 1.08001 * 119.99297 * 345.39188 * 22 21 3 24 24 C 1.38807 * 120.00136 * 165.39120 * 22 21 3 25 25 N 1.31615 * 120.00125 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99797 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47176 * 89.99991 * 26 24 22 28 28 H 1.48498 * 109.46960 * 210.00070 * 26 24 22 29 29 H 1.48498 * 109.47137 * 329.99965 * 26 24 22 30 30 H 1.09005 * 109.46776 * 65.75719 * 1 2 3 31 31 H 1.08997 * 109.47630 * 185.75140 * 1 2 3 32 32 H 1.09000 * 109.47060 * 305.76046 * 1 2 3 33 33 H 1.09008 * 109.47132 * 239.99404 * 2 1 3 34 34 H 1.08997 * 109.46743 * 120.00251 * 2 1 3 35 35 H 0.97005 * 119.99246 * 25.00307 * 7 5 3 36 36 H 1.08004 * 126.18480 * 0.05826 * 11 10 8 37 37 H 1.07999 * 122.68635 * 359.94645 * 13 12 11 38 38 H 1.07994 * 124.37740 * 179.80370 * 14 13 12 39 39 H 1.09007 * 111.00072 * 153.57578 * 19 5 3 40 40 H 1.08997 * 111.00492 * 277.42165 * 19 5 3 41 41 H 1.08998 * 110.36581 * 204.15152 * 20 19 5 42 42 H 1.08998 * 110.36734 * 81.82623 * 20 19 5 43 43 H 0.97001 * 120.00196 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6204 1.9838 0.8478 5 6 1.6414 2.1400 -1.3175 6 1 1.4663 1.4066 -2.1047 7 7 0.4572 2.9801 -1.1216 8 6 -0.3462 3.2662 -2.1652 9 8 -0.0882 2.8263 -3.2704 10 6 -1.5300 4.1066 -1.9693 11 6 -2.4174 4.4669 -2.9365 12 6 -3.4115 5.2812 -2.3270 13 6 -4.6283 6.0108 -2.6544 14 6 -5.1838 6.6375 -1.6365 15 16 -4.2719 6.3841 -0.1602 16 6 -3.0837 5.3853 -0.9889 17 7 -1.9323 4.6663 -0.7724 18 1 -1.4784 4.5678 0.0791 19 6 2.8848 3.0105 -1.6398 20 6 4.0371 2.1040 -1.1398 21 7 3.5083 1.4568 0.0747 22 6 4.2602 0.9520 1.1018 23 1 3.7932 0.7121 2.0456 24 6 5.6225 0.7488 0.9300 25 7 6.1917 1.0417 -0.2200 26 14 6.6483 0.0608 2.3314 27 1 6.6688 -1.4217 2.2485 28 1 8.0355 0.5814 2.2315 29 1 6.0561 0.4758 3.6284 30 1 -0.3633 0.4220 -0.9371 31 1 -0.3634 -1.0224 0.1030 32 1 -0.3633 0.6006 0.8339 33 1 1.8933 -0.5140 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 0.2515 3.3304 -0.2408 36 1 -2.3746 4.1849 -3.9782 37 1 -5.0410 6.0387 -3.6520 38 1 -6.0862 7.2269 -1.7022 39 1 2.9674 3.1921 -2.7115 40 1 2.8583 3.9495 -1.0870 41 1 4.9144 2.7041 -0.8985 42 1 4.2841 1.3548 -1.8919 43 1 7.1438 0.9000 -0.3400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087679277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:15 Heat of formation + Delta-G solvation = 37.201896 kcal Electronic energy + Delta-G solvation = -26035.282400 eV Core-core repulsion = 22400.506211 eV Total energy + Delta-G solvation = -3634.776189 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -42.38887 -40.78961 -39.19391 -36.31013 -35.69887 -34.34831 -33.53524 -31.53604 -31.03992 -29.59040 -28.03761 -26.44653 -24.58735 -23.87163 -23.16486 -22.08915 -21.63895 -21.13313 -20.30195 -20.10508 -18.78384 -17.80196 -17.44498 -16.73269 -16.41468 -15.98895 -15.77483 -15.66819 -15.51661 -15.40282 -15.11634 -14.80313 -14.49380 -14.35381 -13.82003 -13.70576 -13.57921 -13.27478 -12.89651 -12.78332 -12.75239 -12.67452 -12.58037 -12.26113 -12.07923 -12.01603 -11.95981 -11.73179 -11.60333 -11.42574 -11.27173 -10.69554 -10.54924 -10.14454 -9.27139 -8.84901 -8.63073 -7.86941 -5.25109 0.10302 0.20469 0.44991 1.09382 1.46445 1.47900 1.56131 1.83571 1.88179 2.12426 2.32479 2.49856 3.32914 3.48539 3.67960 3.78886 3.84362 3.86728 4.03583 4.15198 4.32733 4.37683 4.44288 4.56877 4.60846 4.65833 4.70027 4.79377 4.80535 4.99221 5.07787 5.13271 5.16662 5.20995 5.25818 5.41508 5.44737 5.46857 5.55109 5.60575 5.66504 5.70623 6.13931 6.21765 6.41987 7.01810 7.07611 7.74973 8.41887 9.24344 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.002505 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.396325 B =11176.587851 C =11452.217377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.159 3.841 4 H 0.052 0.948 5 C 0.157 3.843 6 H 0.084 0.916 7 N -0.698 5.698 8 C 0.592 3.408 9 O -0.562 6.562 10 C -0.015 4.015 11 C -0.081 4.081 12 C -0.182 4.182 13 C -0.087 4.087 14 C -0.212 4.212 15 S 0.155 5.845 16 C -0.020 4.020 17 N -0.516 5.516 18 H 0.432 0.568 19 C -0.142 4.142 20 C 0.182 3.818 21 N -0.612 5.612 22 C -0.232 4.232 23 H 0.083 0.917 24 C -0.062 4.062 25 N -0.949 5.949 26 Si 0.974 3.026 27 H -0.288 1.288 28 H -0.297 1.297 29 H -0.266 1.266 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.050 0.950 35 H 0.408 0.592 36 H 0.156 0.844 37 H 0.163 0.837 38 H 0.201 0.799 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.042 0.958 42 H -0.005 1.005 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.692 11.574 0.190 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.052 3.948 4 H 0.070 0.930 5 C 0.051 3.949 6 H 0.102 0.898 7 N -0.348 5.348 8 C 0.380 3.620 9 O -0.441 6.441 10 C -0.128 4.128 11 C -0.109 4.109 12 C -0.195 4.195 13 C -0.117 4.117 14 C -0.346 4.346 15 S 0.409 5.591 16 C -0.249 4.249 17 N -0.121 5.121 18 H 0.272 0.728 19 C -0.182 4.182 20 C 0.056 3.944 21 N -0.337 5.337 22 C -0.361 4.361 23 H 0.100 0.900 24 C -0.256 4.256 25 N -0.597 5.597 26 Si 0.803 3.197 27 H -0.216 1.216 28 H -0.224 1.224 29 H -0.191 1.191 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.244 0.756 36 H 0.173 0.827 37 H 0.181 0.819 38 H 0.218 0.782 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.060 0.940 42 H 0.013 0.987 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -24.345 11.633 1.030 27.001 hybrid contribution 1.692 -1.081 -0.310 2.032 sum -22.653 10.552 0.719 25.000 Atomic orbital electron populations 1.21652 0.93997 1.01986 1.01553 1.21901 0.96279 0.97668 1.00736 1.21244 0.84573 0.94546 0.94403 0.93009 1.21733 0.83534 0.91983 0.97642 0.89835 1.45682 1.25799 1.51779 1.11526 1.17115 0.81241 0.79346 0.84315 1.90857 1.73660 1.54195 1.25355 1.19739 0.99704 1.06838 0.86530 1.20906 0.92587 0.98168 0.99251 1.19716 1.00137 1.07177 0.92420 1.20553 0.92821 0.96856 1.01431 1.25310 1.06377 1.08408 0.94503 1.83949 1.16424 1.49110 1.09652 1.23999 0.95646 1.05409 0.99885 1.41318 1.20259 1.40534 1.09958 0.72757 1.23251 0.95462 0.98677 1.00769 1.21139 0.93800 0.92344 0.87106 1.44667 1.00457 1.68350 1.20194 1.19288 0.90270 1.34832 0.91736 0.89961 1.25708 0.98595 1.01962 0.99293 1.70131 1.10318 1.54332 1.24939 0.85146 0.77674 0.77810 0.79100 1.21551 1.22353 1.19083 0.93460 0.92208 0.91622 0.94456 0.93071 0.75594 0.82669 0.81912 0.78183 0.91270 0.90758 0.93990 0.98679 0.94351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 9.57 71.98 0.69 -2.92 16 2 C -0.13 -4.51 5.42 30.59 0.17 -4.34 16 3 C 0.16 5.99 2.93 45.34 0.13 6.12 16 4 H 0.05 1.79 7.72 -2.39 -0.02 1.77 16 5 C 0.16 5.37 2.02 46.18 0.09 5.47 16 6 H 0.08 3.20 7.19 -2.38 -0.02 3.18 16 7 N -0.70 -18.35 4.90 -441.02 -2.16 -20.51 16 8 C 0.59 16.97 7.78 86.40 0.67 17.65 16 9 O -0.56 -20.52 16.49 -4.40 -0.07 -20.59 16 10 C -0.01 -0.35 6.97 39.81 0.28 -0.07 16 11 C -0.08 -1.92 10.58 22.77 0.24 -1.68 16 12 C -0.18 -3.74 6.80 -20.41 -0.14 -3.88 16 13 C -0.09 -1.27 10.42 23.39 0.24 -1.03 16 14 C -0.21 -2.37 11.03 67.04 0.74 -1.63 16 15 S 0.16 2.04 23.24 -56.49 -1.31 0.73 16 16 C -0.02 -0.38 8.41 83.79 0.70 0.33 16 17 N -0.52 -9.46 6.08 -179.04 -1.09 -10.55 16 18 H 0.43 5.52 8.14 -92.71 -0.75 4.77 16 19 C -0.14 -5.42 6.77 31.99 0.22 -5.21 16 20 C 0.18 8.94 5.41 86.85 0.47 9.41 16 21 N -0.61 -29.91 3.13 -668.29 -2.09 -32.00 16 22 C -0.23 -12.43 9.75 84.03 0.82 -11.61 16 23 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 24 C -0.06 -3.45 5.47 84.86 0.46 -2.99 16 25 N -0.95 -56.50 10.57 21.65 0.23 -56.27 16 26 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 27 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 28 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 29 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 30 H 0.05 1.30 7.41 -2.38 -0.02 1.28 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 1.48 8.07 -2.38 -0.02 1.46 16 34 H 0.05 1.96 7.91 -2.39 -0.02 1.94 16 35 H 0.41 8.20 7.44 -92.70 -0.69 7.51 16 36 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 37 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.20 0.90 8.06 -2.91 -0.02 0.88 16 39 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 40 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.04 2.31 6.93 -2.39 -0.02 2.30 16 42 H 0.00 -0.27 8.06 -2.39 -0.02 -0.29 16 43 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -70.15 366.37 0.93 -69.23 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -0.39 Total: 19.47 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 5.79 Total: 3.62 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -5.11 Total: -119.33 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.07 Total: -20.59 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.31 Total: 0.73 kcal Total: -70.15 0.93 -69.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087679277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.428 kcal (2) G-P(sol) polarization free energy of solvation -70.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds