Wall clock time and date at job start Tue Mar 31 2020 17:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47073 * 2 1 4 4 H 1.09003 * 109.87577 * 53.86685 * 3 2 1 5 5 C 1.54322 * 109.88341 * 292.85194 * 3 2 1 6 6 H 1.08997 * 110.71862 * 336.75098 * 5 3 2 7 7 N 1.46493 * 110.72381 * 100.02722 * 5 3 2 8 8 C 1.34780 * 120.00212 * 205.00061 * 7 5 3 9 9 O 1.21733 * 119.99812 * 359.97438 * 8 7 5 10 10 C 1.46451 * 120.00048 * 180.02562 * 8 7 5 11 11 C 1.37464 * 125.80433 * 180.02562 * 10 8 7 12 12 C 1.40660 * 107.55682 * 179.97438 * 11 10 8 13 13 S 1.76022 * 142.39787 * 179.97438 * 12 11 10 14 14 C 1.75592 * 91.31297 * 179.97438 * 13 12 11 15 15 C 1.32778 * 110.47194 * 359.97438 * 14 13 12 16 16 C 1.38248 * 108.03493 * 359.97438 * 12 11 10 17 17 N 1.37919 * 125.80736 * 359.70743 * 10 8 7 18 18 H 0.96997 * 125.68411 * 0.03453 * 17 10 8 19 19 C 1.55406 * 102.82528 * 218.48346 * 5 3 2 20 20 C 1.54907 * 101.66687 * 35.33499 * 19 5 3 21 21 N 1.47023 * 109.88396 * 174.88019 * 3 2 1 22 22 C 1.36934 * 125.64786 * 298.39952 * 21 3 2 23 23 H 1.08005 * 119.99815 * 345.36246 * 22 21 3 24 24 C 1.38815 * 120.00173 * 165.36421 * 22 21 3 25 25 N 1.31618 * 119.99701 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00108 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46987 * 60.00017 * 26 24 22 28 28 H 1.48495 * 109.46755 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47108 * 299.99961 * 26 24 22 30 30 H 1.09001 * 109.47122 * 305.52334 * 1 2 3 31 31 H 1.08994 * 109.47276 * 65.52179 * 1 2 3 32 32 H 1.09004 * 109.47082 * 185.52498 * 1 2 3 33 33 H 1.08997 * 109.46944 * 240.00169 * 2 1 3 34 34 H 1.09000 * 109.47153 * 119.99986 * 2 1 3 35 35 H 0.97001 * 120.00255 * 24.99381 * 7 5 3 36 36 H 1.08003 * 126.22621 * 359.93152 * 11 10 8 37 37 H 1.07998 * 124.76379 * 180.02562 * 14 13 12 38 38 H 1.08000 * 122.16133 * 179.97438 * 15 14 13 39 39 H 1.09005 * 110.88981 * 277.26034 * 19 5 3 40 40 H 1.09001 * 111.03650 * 153.47471 * 19 5 3 41 41 H 1.09002 * 110.36150 * 204.23523 * 20 19 5 42 42 H 1.08998 * 110.36837 * 81.91735 * 20 19 5 43 43 H 0.97001 * 119.99849 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9934 0.8279 5 6 1.6836 2.1252 -1.3373 6 1 1.5339 1.3829 -2.1213 7 7 0.4962 2.9699 -1.1878 8 6 -0.2743 3.2452 -2.2589 9 8 0.0169 2.7922 -3.3506 10 6 -1.4611 4.0902 -2.1095 11 6 -2.3273 4.4454 -3.1160 12 6 -3.3254 5.2586 -2.5496 13 16 -4.7835 6.1599 -2.9497 14 6 -4.9706 6.6762 -1.2819 15 6 -3.9928 6.1836 -0.5308 16 6 -3.0557 5.3899 -1.2000 17 7 -1.9031 4.6600 -0.9338 18 1 -1.4792 4.5684 -0.0662 19 6 2.9427 2.9876 -1.6307 20 6 4.0755 2.0852 -1.0810 21 7 3.5050 1.4549 0.1234 22 6 4.2210 0.9618 1.1813 23 1 3.7223 0.7354 2.1122 24 6 5.5878 0.7530 1.0574 25 7 6.1953 1.0285 -0.0771 26 14 6.5646 0.0810 2.5009 27 1 6.0312 -1.2515 2.8821 28 1 7.9925 -0.0488 2.1146 29 1 6.4466 1.0097 3.6537 30 1 -0.3633 0.5971 0.8364 31 1 -0.3633 0.4258 -0.9352 32 1 -0.3633 -1.0229 0.0989 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.2643 3.3311 -0.3179 36 1 -2.2544 4.1536 -4.1533 37 1 -5.7694 7.3054 -0.9180 38 1 -3.9246 6.3843 0.5282 39 1 2.9001 3.9337 -1.0911 40 1 3.0614 3.1552 -2.7012 41 1 4.9458 2.6867 -0.8183 42 1 4.3456 1.3259 -1.8148 43 1 7.1505 0.8830 -0.1636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087783733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:24 Heat of formation + Delta-G solvation = 55.874908 kcal Electronic energy + Delta-G solvation = -26047.900165 eV Core-core repulsion = 22413.933699 eV Total energy + Delta-G solvation = -3633.966467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 6.82 seconds Orbital eigenvalues (eV) -41.53512 -39.52632 -37.70483 -35.51537 -34.18208 -32.83796 -31.81975 -31.10968 -29.32448 -28.35619 -26.57090 -24.64970 -23.64791 -22.81316 -21.83776 -20.70734 -20.35257 -20.26143 -19.45734 -18.60850 -16.92284 -16.59407 -16.02790 -15.68531 -15.36177 -14.83521 -14.52800 -14.30964 -14.19639 -14.07969 -13.78445 -13.72617 -13.37497 -12.98580 -12.73720 -12.13153 -12.11811 -12.00842 -11.82972 -11.70094 -11.20655 -11.09818 -10.94641 -10.88004 -10.69598 -10.52842 -10.41845 -10.15848 -9.97597 -9.96833 -9.79080 -9.70930 -8.81891 -8.63435 -8.30245 -7.91125 -6.86701 -5.80358 -3.17250 0.52983 1.28995 1.77430 1.82170 2.50228 2.60568 3.16524 3.29663 3.35687 3.40640 3.41625 4.43038 4.48898 4.67886 4.72860 5.08544 5.17231 5.27027 5.29324 5.42646 5.48600 5.49627 5.67149 5.70456 5.73206 5.73934 5.79065 5.99174 6.14866 6.17140 6.21864 6.34148 6.37329 6.42563 6.48131 6.60621 6.66174 6.88285 7.01804 7.07853 7.44985 7.51190 7.57729 7.73434 8.15676 8.21999 9.12657 9.73544 10.41074 11.31478 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025217 B = 0.002437 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.108130 B =11487.224707 C =11668.390832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.033 0.967 5 C 0.137 3.863 6 H 0.099 0.901 7 N -0.710 5.710 8 C 0.584 3.416 9 O -0.522 6.522 10 C 0.016 3.984 11 C -0.076 4.076 12 C -0.217 4.217 13 S 0.128 5.872 14 C -0.191 4.191 15 C -0.113 4.113 16 C 0.062 3.938 17 N -0.540 5.540 18 H 0.419 0.581 19 C -0.157 4.157 20 C 0.174 3.826 21 N -0.593 5.593 22 C -0.231 4.231 23 H 0.074 0.926 24 C -0.002 4.002 25 N -0.916 5.916 26 Si 0.911 3.089 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.285 1.285 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.392 0.608 36 H 0.157 0.843 37 H 0.172 0.828 38 H 0.141 0.859 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.029 0.971 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.297 10.281 -1.764 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.050 0.950 5 C 0.033 3.967 6 H 0.117 0.883 7 N -0.359 5.359 8 C 0.370 3.630 9 O -0.398 6.398 10 C -0.099 4.099 11 C -0.106 4.106 12 C -0.338 4.338 13 S 0.387 5.613 14 C -0.327 4.327 15 C -0.147 4.147 16 C -0.056 4.056 17 N -0.143 5.143 18 H 0.258 0.742 19 C -0.196 4.196 20 C 0.049 3.951 21 N -0.318 5.318 22 C -0.359 4.359 23 H 0.092 0.908 24 C -0.199 4.199 25 N -0.562 5.562 26 Si 0.741 3.259 27 H -0.210 1.210 28 H -0.216 1.216 29 H -0.211 1.211 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.225 0.775 36 H 0.174 0.826 37 H 0.189 0.811 38 H 0.158 0.842 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.047 0.953 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.515 10.099 -3.675 24.049 hybrid contribution 1.441 -0.495 3.015 3.378 sum -20.074 9.604 -0.660 22.263 Atomic orbital electron populations 1.21771 0.97304 1.00606 1.00772 1.22025 0.93508 0.99111 1.02557 1.21065 0.87410 0.93460 0.92744 0.94984 1.22237 0.82871 0.92422 0.99178 0.88311 1.45968 1.27696 1.51953 1.10293 1.16913 0.81136 0.80032 0.84949 1.90880 1.71351 1.52116 1.25436 1.20481 0.99283 1.04456 0.85646 1.20414 0.92216 0.99041 0.98961 1.22688 1.03775 1.10397 0.96923 1.83923 1.21071 1.48863 1.07427 1.25222 1.03685 1.06980 0.96819 1.18905 0.94357 1.00382 1.01014 1.18343 0.91868 1.01727 0.93679 1.41994 1.21575 1.41003 1.09746 0.74218 1.23486 0.96514 0.99046 1.00579 1.21439 0.92938 0.93119 0.87606 1.44429 0.98395 1.69221 1.19731 1.18875 0.90093 1.36722 0.90218 0.90784 1.24914 0.97113 1.00801 0.97092 1.69912 1.09490 1.52783 1.23979 0.86231 0.79185 0.79026 0.81473 1.21048 1.21556 1.21140 0.93641 0.93350 0.93566 0.92275 0.91566 0.77451 0.82568 0.81087 0.84151 0.92088 0.91685 0.90735 0.95267 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.65 37.16 0.36 -1.76 16 2 C -0.13 -2.39 5.43 -26.73 -0.15 -2.54 16 3 C 0.16 3.07 2.91 -66.95 -0.19 2.88 16 4 H 0.03 0.59 7.71 -51.93 -0.40 0.19 16 5 C 0.14 2.37 2.10 -65.96 -0.14 2.23 16 6 H 0.10 1.86 7.18 -51.93 -0.37 1.49 16 7 N -0.71 -9.77 4.96 -53.28 -0.26 -10.04 16 8 C 0.58 8.59 7.78 -12.95 -0.10 8.49 16 9 O -0.52 -9.51 16.51 5.16 0.09 -9.43 16 10 C 0.02 0.20 7.01 -82.10 -0.58 -0.37 16 11 C -0.08 -0.95 10.60 -38.95 -0.41 -1.36 16 12 C -0.22 -2.48 7.26 -38.66 -0.28 -2.76 16 13 S 0.13 1.12 23.31 -107.50 -2.51 -1.39 16 14 C -0.19 -1.37 11.13 28.86 0.32 -1.05 16 15 C -0.11 -0.91 10.16 -40.85 -0.42 -1.33 16 16 C 0.06 0.65 7.67 -84.00 -0.64 0.00 16 17 N -0.54 -5.37 6.14 -7.34 -0.05 -5.41 16 18 H 0.42 3.03 8.14 -40.82 -0.33 2.70 16 19 C -0.16 -2.96 6.78 -24.45 -0.17 -3.12 16 20 C 0.17 4.09 5.41 -2.53 -0.01 4.08 16 21 N -0.59 -14.22 3.13 -162.58 -0.51 -14.73 16 22 C -0.23 -6.10 9.71 -15.06 -0.15 -6.25 16 23 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 24 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 25 N -0.92 -26.14 10.57 55.49 0.59 -25.55 16 26 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 29 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.70 7.47 -51.93 -0.39 0.32 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 1.15 8.02 -51.93 -0.42 0.73 16 34 H 0.07 1.29 7.84 -51.93 -0.41 0.89 16 35 H 0.39 4.36 7.44 -40.82 -0.30 4.06 16 36 H 0.16 1.86 8.06 -52.48 -0.42 1.43 16 37 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.07 1.95 6.93 -51.93 -0.36 1.59 16 42 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -31.34 366.26 -10.71 -42.05 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.91 Total: 5.53 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -2.65 Total: -3.00 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.23 Total: -55.72 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.51 Total: -1.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.34 -10.71 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087783733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.928 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.82 seconds