Wall clock time and date at job start Tue Mar 31 2020 17:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47073 * 2 1 4 4 H 1.09003 * 109.87577 * 53.86685 * 3 2 1 5 5 C 1.54322 * 109.88341 * 292.85194 * 3 2 1 6 6 H 1.08997 * 110.71862 * 336.75098 * 5 3 2 7 7 N 1.46493 * 110.72381 * 100.02722 * 5 3 2 8 8 C 1.34780 * 120.00212 * 205.00061 * 7 5 3 9 9 O 1.21733 * 119.99812 * 359.97438 * 8 7 5 10 10 C 1.46451 * 120.00048 * 180.02562 * 8 7 5 11 11 C 1.37464 * 125.80433 * 180.02562 * 10 8 7 12 12 C 1.40660 * 107.55682 * 179.97438 * 11 10 8 13 13 S 1.76022 * 142.39787 * 179.97438 * 12 11 10 14 14 C 1.75592 * 91.31297 * 179.97438 * 13 12 11 15 15 C 1.32778 * 110.47194 * 359.97438 * 14 13 12 16 16 C 1.38248 * 108.03493 * 359.97438 * 12 11 10 17 17 N 1.37919 * 125.80736 * 359.70743 * 10 8 7 18 18 H 0.96997 * 125.68411 * 0.03453 * 17 10 8 19 19 C 1.55406 * 102.82528 * 218.48346 * 5 3 2 20 20 C 1.54907 * 101.66687 * 35.33499 * 19 5 3 21 21 N 1.47023 * 109.88396 * 174.88019 * 3 2 1 22 22 C 1.36934 * 125.64786 * 298.39952 * 21 3 2 23 23 H 1.08005 * 119.99815 * 345.36246 * 22 21 3 24 24 C 1.38815 * 120.00173 * 165.36421 * 22 21 3 25 25 N 1.31618 * 119.99701 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00108 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46987 * 60.00017 * 26 24 22 28 28 H 1.48495 * 109.46755 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47108 * 299.99961 * 26 24 22 30 30 H 1.09001 * 109.47122 * 305.52334 * 1 2 3 31 31 H 1.08994 * 109.47276 * 65.52179 * 1 2 3 32 32 H 1.09004 * 109.47082 * 185.52498 * 1 2 3 33 33 H 1.08997 * 109.46944 * 240.00169 * 2 1 3 34 34 H 1.09000 * 109.47153 * 119.99986 * 2 1 3 35 35 H 0.97001 * 120.00255 * 24.99381 * 7 5 3 36 36 H 1.08003 * 126.22621 * 359.93152 * 11 10 8 37 37 H 1.07998 * 124.76379 * 180.02562 * 14 13 12 38 38 H 1.08000 * 122.16133 * 179.97438 * 15 14 13 39 39 H 1.09005 * 110.88981 * 277.26034 * 19 5 3 40 40 H 1.09001 * 111.03650 * 153.47471 * 19 5 3 41 41 H 1.09002 * 110.36150 * 204.23523 * 20 19 5 42 42 H 1.08998 * 110.36837 * 81.91735 * 20 19 5 43 43 H 0.97001 * 119.99849 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9934 0.8279 5 6 1.6836 2.1252 -1.3373 6 1 1.5339 1.3829 -2.1213 7 7 0.4962 2.9699 -1.1878 8 6 -0.2743 3.2452 -2.2589 9 8 0.0169 2.7922 -3.3506 10 6 -1.4611 4.0902 -2.1095 11 6 -2.3273 4.4454 -3.1160 12 6 -3.3254 5.2586 -2.5496 13 16 -4.7835 6.1599 -2.9497 14 6 -4.9706 6.6762 -1.2819 15 6 -3.9928 6.1836 -0.5308 16 6 -3.0557 5.3899 -1.2000 17 7 -1.9031 4.6600 -0.9338 18 1 -1.4792 4.5684 -0.0662 19 6 2.9427 2.9876 -1.6307 20 6 4.0755 2.0852 -1.0810 21 7 3.5050 1.4549 0.1234 22 6 4.2210 0.9618 1.1813 23 1 3.7223 0.7354 2.1122 24 6 5.5878 0.7530 1.0574 25 7 6.1953 1.0285 -0.0771 26 14 6.5646 0.0810 2.5009 27 1 6.0312 -1.2515 2.8821 28 1 7.9925 -0.0488 2.1146 29 1 6.4466 1.0097 3.6537 30 1 -0.3633 0.5971 0.8364 31 1 -0.3633 0.4258 -0.9352 32 1 -0.3633 -1.0229 0.0989 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.2643 3.3311 -0.3179 36 1 -2.2544 4.1536 -4.1533 37 1 -5.7694 7.3054 -0.9180 38 1 -3.9246 6.3843 0.5282 39 1 2.9001 3.9337 -1.0911 40 1 3.0614 3.1552 -2.7012 41 1 4.9458 2.6867 -0.8183 42 1 4.3456 1.3259 -1.8148 43 1 7.1505 0.8830 -0.1636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087783733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:23 Heat of formation + Delta-G solvation = 36.333967 kcal Electronic energy + Delta-G solvation = -26048.747524 eV Core-core repulsion = 22413.933699 eV Total energy + Delta-G solvation = -3634.813825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.40087 -40.81591 -39.21308 -36.23471 -35.71917 -34.35739 -33.53615 -31.98150 -30.99567 -29.44190 -27.99916 -26.41872 -24.64109 -23.86580 -23.10996 -22.09994 -21.66934 -21.42877 -20.60596 -19.61281 -18.77372 -17.54896 -17.42906 -16.72604 -16.39812 -16.36751 -15.80946 -15.65481 -15.52438 -15.13232 -14.99895 -14.83777 -14.56679 -14.35743 -13.84123 -13.79340 -13.58327 -13.27997 -12.89935 -12.80645 -12.71750 -12.64386 -12.52358 -12.26009 -12.08378 -12.02602 -11.97218 -11.73111 -11.59425 -11.43485 -11.27545 -10.75593 -10.67757 -10.15823 -9.09704 -8.84374 -8.63515 -7.86318 -5.24492 -0.24188 0.60217 0.86534 1.18044 1.46755 1.49329 1.55512 1.73807 1.80226 2.03384 2.20903 2.50534 3.33466 3.51476 3.75131 3.79230 3.85047 3.86342 4.01435 4.15801 4.33569 4.38279 4.40801 4.54637 4.57508 4.61275 4.70699 4.77762 4.81690 4.95800 5.00515 5.08085 5.10492 5.17074 5.23622 5.41593 5.43664 5.46920 5.52270 5.58257 5.62578 5.70969 6.22251 6.28482 6.45942 7.01717 7.08039 7.75578 8.42560 9.24788 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025217 B = 0.002437 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.108130 B =11487.224707 C =11668.390832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.160 3.840 4 H 0.054 0.946 5 C 0.156 3.844 6 H 0.083 0.917 7 N -0.696 5.696 8 C 0.591 3.409 9 O -0.563 6.563 10 C -0.001 4.001 11 C -0.084 4.084 12 C -0.252 4.252 13 S 0.127 5.873 14 C -0.169 4.169 15 C -0.128 4.128 16 C 0.071 3.929 17 N -0.529 5.529 18 H 0.432 0.568 19 C -0.142 4.142 20 C 0.182 3.818 21 N -0.612 5.612 22 C -0.233 4.233 23 H 0.083 0.917 24 C -0.062 4.062 25 N -0.949 5.949 26 Si 0.975 3.025 27 H -0.278 1.278 28 H -0.298 1.298 29 H -0.275 1.275 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.409 0.591 36 H 0.151 0.849 37 H 0.207 0.793 38 H 0.169 0.831 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.042 0.958 42 H -0.005 1.005 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.478 11.760 0.396 27.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.071 0.929 5 C 0.051 3.949 6 H 0.101 0.899 7 N -0.346 5.346 8 C 0.379 3.621 9 O -0.441 6.441 10 C -0.116 4.116 11 C -0.115 4.115 12 C -0.372 4.372 13 S 0.387 5.613 14 C -0.305 4.305 15 C -0.161 4.161 16 C -0.049 4.049 17 N -0.133 5.133 18 H 0.273 0.727 19 C -0.182 4.182 20 C 0.056 3.944 21 N -0.336 5.336 22 C -0.362 4.362 23 H 0.101 0.899 24 C -0.255 4.255 25 N -0.597 5.597 26 Si 0.803 3.197 27 H -0.204 1.204 28 H -0.225 1.225 29 H -0.201 1.201 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.245 0.755 36 H 0.168 0.832 37 H 0.224 0.776 38 H 0.187 0.813 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.013 0.987 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -24.740 11.587 -1.463 27.358 hybrid contribution 2.265 -0.868 2.322 3.358 sum -22.475 10.719 0.859 24.915 Atomic orbital electron populations 1.21653 0.93974 1.01981 1.01592 1.21912 0.96319 0.97708 1.00700 1.21243 0.84750 0.94567 0.94160 0.92882 1.21766 0.83489 0.91992 0.97702 0.89893 1.45648 1.26392 1.51379 1.11178 1.17104 0.81350 0.79477 0.84193 1.90862 1.72485 1.53784 1.26989 1.19954 0.98982 1.05757 0.86879 1.20524 0.92818 0.99247 0.98961 1.22933 1.04976 1.11487 0.97767 1.83966 1.19802 1.48456 1.09115 1.25725 1.03750 1.05659 0.95342 1.19209 0.93950 1.00378 1.02542 1.18811 0.91613 1.00895 0.93597 1.41867 1.21462 1.40425 1.09559 0.72678 1.23296 0.95451 0.98758 1.00662 1.21134 0.93647 0.92486 0.87117 1.44658 1.00596 1.69259 1.19136 1.19254 0.90475 1.35343 0.91159 0.89935 1.25713 0.98355 1.01953 0.99526 1.70128 1.09087 1.54537 1.25973 0.85216 0.77109 0.78613 0.78768 1.20385 1.22468 1.20065 0.91534 0.93427 0.92272 0.94488 0.93118 0.75458 0.83167 0.77613 0.81327 0.90728 0.91325 0.93994 0.98724 0.94357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 9.65 71.98 0.69 -2.89 16 2 C -0.13 -4.52 5.43 30.60 0.17 -4.35 16 3 C 0.16 5.97 2.91 45.34 0.13 6.10 16 4 H 0.05 1.81 7.71 -2.39 -0.02 1.79 16 5 C 0.16 5.34 2.10 46.27 0.10 5.43 16 6 H 0.08 3.18 7.18 -2.39 -0.02 3.16 16 7 N -0.70 -18.11 4.96 -440.67 -2.19 -20.30 16 8 C 0.59 16.97 7.78 86.38 0.67 17.64 16 9 O -0.56 -20.73 16.51 -4.45 -0.07 -20.81 16 10 C 0.00 -0.03 7.01 40.14 0.28 0.26 16 11 C -0.08 -2.08 10.60 22.68 0.24 -1.84 16 12 C -0.25 -5.36 7.26 22.86 0.17 -5.19 16 13 S 0.13 1.96 23.31 -56.49 -1.32 0.64 16 14 C -0.17 -1.73 11.13 66.64 0.74 -0.99 16 15 C -0.13 -1.55 10.16 21.49 0.22 -1.33 16 16 C 0.07 1.28 7.67 38.40 0.29 1.58 16 17 N -0.53 -9.25 6.14 -177.14 -1.09 -10.33 16 18 H 0.43 4.91 8.14 -92.71 -0.75 4.15 16 19 C -0.14 -5.41 6.78 32.07 0.22 -5.20 16 20 C 0.18 8.92 5.41 86.86 0.47 9.39 16 21 N -0.61 -29.79 3.13 -668.28 -2.09 -31.88 16 22 C -0.23 -12.44 9.71 84.03 0.82 -11.63 16 23 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 24 C -0.06 -3.44 5.47 84.86 0.46 -2.97 16 25 N -0.95 -56.43 10.57 21.65 0.23 -56.20 16 26 Si 0.97 44.72 29.55 68.60 2.03 46.74 16 27 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 28 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 29 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.29 7.47 -2.39 -0.02 1.27 16 32 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.04 1.46 8.02 -2.39 -0.02 1.44 16 34 H 0.05 1.95 7.84 -2.39 -0.02 1.93 16 35 H 0.41 7.99 7.44 -92.71 -0.69 7.30 16 36 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.21 0.62 8.06 -2.91 -0.02 0.60 16 38 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 39 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 40 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.04 2.31 6.93 -2.39 -0.02 2.29 16 42 H -0.01 -0.29 8.06 -2.39 -0.02 -0.31 16 43 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -70.89 366.26 0.78 -70.11 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -0.39 Total: 18.02 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 5.67 Total: 4.01 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -5.13 Total: -118.71 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.07 Total: -20.81 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -1.32 Total: 0.64 kcal Total: -70.89 0.78 -70.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087783733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.440 kcal (2) G-P(sol) polarization free energy of solvation -70.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds