Wall clock time and date at job start Tue Mar 31 2020 17:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47278 * 2 1 4 4 H 1.08994 * 109.99948 * 304.62343 * 3 2 1 5 5 C 1.54332 * 109.99005 * 183.58421 * 3 2 1 6 6 H 1.08992 * 110.52009 * 336.97697 * 5 3 2 7 7 N 1.46498 * 110.85011 * 100.20314 * 5 3 2 8 8 C 1.34771 * 120.00055 * 200.14685 * 7 5 3 9 9 O 1.21736 * 120.00415 * 359.97438 * 8 7 5 10 10 C 1.46416 * 120.00336 * 179.97438 * 8 7 5 11 11 C 1.35780 * 124.96604 * 179.71779 * 10 8 7 12 12 C 1.38866 * 115.18792 * 179.82799 * 11 10 8 13 13 N 1.39748 * 139.91069 * 180.09836 * 12 11 10 14 14 H 0.97000 * 125.63800 * 0.36030 * 13 12 11 15 15 C 1.36220 * 108.73263 * 180.34172 * 13 12 11 16 16 C 1.34513 * 109.29355 * 359.97438 * 15 13 12 17 17 C 1.38237 * 113.39418 * 0.45231 * 12 11 10 18 18 S 1.75626 * 124.95662 * 0.02562 * 10 8 7 19 19 C 1.55157 * 103.01870 * 218.66740 * 5 3 2 20 20 C 1.54903 * 101.58240 * 35.30681 * 19 5 3 21 21 N 1.47024 * 109.87775 * 65.71943 * 3 2 1 22 22 C 1.36931 * 125.64748 * 298.39313 * 21 3 2 23 23 H 1.08000 * 120.00156 * 333.71028 * 22 21 3 24 24 C 1.38810 * 120.00109 * 153.71456 * 22 21 3 25 25 N 1.31625 * 119.99544 * 334.83488 * 24 22 21 26 26 Si 1.86797 * 120.00288 * 154.83946 * 24 22 21 27 27 H 1.48501 * 109.47160 * 59.99892 * 26 24 22 28 28 H 1.48495 * 109.47190 * 299.99575 * 26 24 22 29 29 H 1.48506 * 109.47246 * 179.97438 * 26 24 22 30 30 H 1.08994 * 109.46986 * 291.79469 * 1 2 3 31 31 H 1.09004 * 109.47097 * 51.78906 * 1 2 3 32 32 H 1.08996 * 109.47405 * 171.79113 * 1 2 3 33 33 H 1.09008 * 109.46944 * 240.00143 * 2 1 3 34 34 H 1.08995 * 109.47385 * 120.00222 * 2 1 3 35 35 H 0.96996 * 120.00093 * 20.13881 * 7 5 3 36 36 H 1.08000 * 122.39822 * 359.97438 * 11 10 8 37 37 H 1.07998 * 125.35421 * 180.02562 * 15 13 12 38 38 H 1.08000 * 126.07313 * 179.97438 * 16 15 13 39 39 H 1.09007 * 111.00612 * 277.23401 * 19 5 3 40 40 H 1.09004 * 111.00567 * 153.38295 * 19 5 3 41 41 H 1.09002 * 110.37204 * 204.15080 * 20 19 5 42 42 H 1.09011 * 110.36743 * 81.83069 * 20 19 5 43 43 H 0.96996 * 120.00054 * 353.73502 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5806 1.4574 -0.0907 6 1 3.9934 0.5136 0.2652 7 7 4.0196 1.7330 -1.4609 8 6 5.2661 1.3985 -1.8492 9 8 6.0274 0.8678 -1.0613 10 6 5.7048 1.6733 -3.2188 11 6 6.9355 1.3848 -3.7144 12 6 7.1329 1.7304 -5.0448 13 7 8.1256 1.6785 -6.0270 14 1 9.0168 1.3135 -5.9110 15 6 7.6349 2.2247 -7.1743 16 6 6.3671 2.6249 -6.9693 17 6 6.0281 2.3225 -5.6278 18 16 4.7182 2.4314 -4.4584 19 6 3.9753 2.6211 0.8567 20 6 2.9034 2.4947 1.9678 21 7 1.6706 2.1034 1.2603 22 6 0.3933 2.3150 1.7059 23 1 -0.4193 2.3936 0.9988 24 6 0.1427 2.4287 3.0665 25 7 0.9578 1.8683 3.9348 26 14 -1.3514 3.3768 3.6650 27 1 -2.5844 2.7504 3.1243 28 1 -1.2648 4.7836 3.1976 29 1 -1.3929 3.3496 5.1493 30 1 -0.3633 0.3815 0.9542 31 1 -0.3633 0.6357 -0.8075 32 1 -0.3634 -1.0171 -0.1467 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.4132 2.1560 -2.0886 36 1 7.7049 0.9178 -3.1173 37 1 8.1780 2.3205 -8.1029 38 1 5.7228 3.0943 -7.6978 39 1 3.8991 3.5821 0.3479 40 1 4.9766 2.4732 1.2611 41 1 2.7643 3.4514 2.4714 42 1 3.1895 1.7255 2.6853 43 1 1.6808 1.3007 3.6249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087811172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:45 Heat of formation + Delta-G solvation = 54.830253 kcal Electronic energy + Delta-G solvation = -25877.281442 eV Core-core repulsion = 22243.269676 eV Total energy + Delta-G solvation = -3634.011766 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 3.15 seconds Orbital eigenvalues (eV) -41.46505 -39.77547 -37.91689 -35.24925 -34.23106 -32.56099 -31.95891 -31.22066 -29.09197 -28.16419 -26.81052 -24.72602 -23.76240 -22.10839 -21.65271 -21.05161 -20.30598 -20.17276 -19.21845 -18.64731 -17.34548 -16.86532 -16.15302 -15.70122 -15.19983 -14.72038 -14.65959 -14.52744 -14.13702 -13.81349 -13.75913 -13.55201 -13.11681 -13.01429 -12.87893 -12.39033 -12.21443 -12.15570 -11.72228 -11.60466 -11.12294 -11.05990 -10.89584 -10.74011 -10.47295 -10.24710 -10.10864 -10.03796 -9.95780 -9.90828 -9.81205 -9.40396 -8.81804 -8.38028 -8.36800 -7.90854 -6.88859 -6.03393 -3.20253 0.35198 1.22882 1.77210 2.16495 2.35962 2.65838 3.23810 3.26869 3.50114 3.54223 3.71643 4.54605 4.58942 4.60750 4.73019 5.00460 5.16011 5.18678 5.34781 5.36362 5.44622 5.50788 5.66342 5.71132 5.77048 5.95343 5.99623 6.07329 6.18272 6.19640 6.31101 6.40137 6.42980 6.52017 6.60401 6.68444 6.79620 6.96869 7.06666 7.07034 7.12582 7.35996 7.57930 7.88916 8.24068 8.51349 9.03637 9.81155 10.39827 11.24378 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.002563 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.248891 B =10921.350111 C =11180.683858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.156 3.844 4 H 0.037 0.963 5 C 0.136 3.864 6 H 0.095 0.905 7 N -0.708 5.708 8 C 0.590 3.410 9 O -0.532 6.532 10 C -0.231 4.231 11 C -0.034 4.034 12 C 0.024 3.976 13 N -0.557 5.557 14 H 0.420 0.580 15 C 0.056 3.944 16 C -0.172 4.172 17 C -0.189 4.189 18 S 0.167 5.833 19 C -0.144 4.144 20 C 0.144 3.856 21 N -0.589 5.589 22 C -0.325 4.325 23 H 0.063 0.937 24 C -0.024 4.024 25 N -0.913 5.913 26 Si 1.064 2.936 27 H -0.293 1.293 28 H -0.294 1.294 29 H -0.286 1.286 30 H 0.092 0.908 31 H 0.038 0.962 32 H 0.029 0.971 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.397 0.603 36 H 0.149 0.851 37 H 0.178 0.822 38 H 0.147 0.853 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.030 0.970 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.741 0.462 -22.426 25.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.049 3.951 4 H 0.055 0.945 5 C 0.032 3.968 6 H 0.113 0.887 7 N -0.358 5.358 8 C 0.376 3.624 9 O -0.410 6.410 10 C -0.351 4.351 11 C -0.070 4.070 12 C -0.090 4.090 13 N -0.159 5.159 14 H 0.257 0.743 15 C -0.077 4.077 16 C -0.201 4.201 17 C -0.311 4.311 18 S 0.430 5.570 19 C -0.184 4.184 20 C 0.018 3.982 21 N -0.315 5.315 22 C -0.453 4.453 23 H 0.081 0.919 24 C -0.227 4.227 25 N -0.553 5.553 26 Si 0.894 3.106 27 H -0.220 1.220 28 H -0.221 1.221 29 H -0.212 1.212 30 H 0.111 0.889 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.231 0.769 36 H 0.167 0.833 37 H 0.195 0.805 38 H 0.165 0.835 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.013 1.148 -20.413 23.223 hybrid contribution 2.410 -1.136 -1.798 3.214 sum 13.423 0.012 -22.211 25.952 Atomic orbital electron populations 1.21888 0.95592 0.98876 1.04226 1.21884 0.97127 0.97509 0.99714 1.21199 0.89477 0.92443 0.91995 0.94521 1.22146 0.95754 0.99288 0.79633 0.88691 1.45901 1.13545 1.61943 1.14388 1.16810 0.82172 0.78550 0.84903 1.90835 1.53537 1.43383 1.53278 1.23818 0.99015 1.13283 0.98987 1.19225 0.96831 0.99774 0.91211 1.17994 0.89842 1.09313 0.91801 1.41904 1.13555 1.51598 1.08800 0.74282 1.21872 0.95280 1.00165 0.90419 1.20143 0.96224 1.09888 0.93855 1.23213 0.98089 1.09820 0.99955 1.83831 1.12339 1.61609 0.99254 1.23205 0.99483 0.97737 0.97969 1.21551 0.85261 0.98652 0.92746 1.44501 1.01924 1.65350 1.19747 1.19593 0.83749 1.49282 0.92665 0.91908 1.25835 1.03999 1.00530 0.92335 1.70760 1.19039 1.29107 1.36376 0.83534 0.74825 0.76134 0.76107 1.21967 1.22094 1.21166 0.88947 0.94268 0.95206 0.94247 0.92521 0.76872 0.83314 0.80501 0.83504 0.91527 0.91441 0.93075 0.95196 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.98 37.16 0.33 -2.60 16 2 C -0.12 -2.40 5.47 -26.73 -0.15 -2.55 16 3 C 0.16 3.15 3.00 -66.95 -0.20 2.95 16 4 H 0.04 0.73 7.69 -51.93 -0.40 0.34 16 5 C 0.14 2.50 2.76 -66.09 -0.18 2.31 16 6 H 0.10 1.87 7.40 -51.93 -0.38 1.48 16 7 N -0.71 -11.06 5.20 -53.41 -0.28 -11.34 16 8 C 0.59 9.47 7.77 -12.97 -0.10 9.37 16 9 O -0.53 -10.16 16.50 5.16 0.09 -10.07 16 10 C -0.23 -3.08 6.38 -37.17 -0.24 -3.32 16 11 C -0.03 -0.42 9.88 -40.23 -0.40 -0.81 16 12 C 0.02 0.26 7.67 -84.02 -0.64 -0.39 16 13 N -0.56 -3.92 6.21 -10.90 -0.07 -3.99 16 14 H 0.42 1.65 8.96 -40.82 -0.37 1.28 16 15 C 0.06 0.34 11.85 -16.92 -0.20 0.14 16 16 C -0.17 -1.42 10.85 -39.60 -0.43 -1.85 16 17 C -0.19 -2.05 7.31 -38.29 -0.28 -2.33 16 18 S 0.17 1.88 22.29 -107.50 -2.40 -0.52 16 19 C -0.14 -2.76 6.77 -24.59 -0.17 -2.93 16 20 C 0.14 3.31 5.56 -2.53 -0.01 3.30 16 21 N -0.59 -14.19 2.92 -162.57 -0.47 -14.66 16 22 C -0.32 -8.60 7.22 -15.06 -0.11 -8.71 16 23 H 0.06 1.67 7.24 -52.49 -0.38 1.29 16 24 C -0.02 -0.66 5.17 -17.43 -0.09 -0.75 16 25 N -0.91 -26.96 13.05 55.49 0.72 -26.24 16 26 Si 1.06 24.86 29.99 -169.99 -5.10 19.77 16 27 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H 0.09 2.14 5.52 -51.93 -0.29 1.86 16 31 H 0.04 0.73 8.13 -51.93 -0.42 0.30 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.40 5.46 7.38 -40.82 -0.30 5.16 16 36 H 0.15 1.68 8.00 -52.49 -0.42 1.26 16 37 H 0.18 0.35 8.06 -52.49 -0.42 -0.08 16 38 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.03 0.75 6.73 -51.92 -0.35 0.40 16 43 H 0.27 8.04 6.20 -40.82 -0.25 7.79 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -32.78 362.34 -10.65 -43.42 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.74 Total: 6.36 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -2.87 Total: -8.18 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.10 Total: -56.23 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.10 Total: 19.77 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.40 Total: -0.52 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.78 -10.65 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087811172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.255 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds