Wall clock time and date at job start Tue Mar 31 2020 17:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47278 * 2 1 4 4 H 1.08994 * 109.99948 * 304.62343 * 3 2 1 5 5 C 1.54332 * 109.99005 * 183.58421 * 3 2 1 6 6 H 1.08992 * 110.52009 * 336.97697 * 5 3 2 7 7 N 1.46498 * 110.85011 * 100.20314 * 5 3 2 8 8 C 1.34771 * 120.00055 * 200.14685 * 7 5 3 9 9 O 1.21736 * 120.00415 * 359.97438 * 8 7 5 10 10 C 1.46416 * 120.00336 * 179.97438 * 8 7 5 11 11 C 1.35780 * 124.96604 * 179.71779 * 10 8 7 12 12 C 1.38866 * 115.18792 * 179.82799 * 11 10 8 13 13 N 1.39748 * 139.91069 * 180.09836 * 12 11 10 14 14 H 0.97000 * 125.63800 * 0.36030 * 13 12 11 15 15 C 1.36220 * 108.73263 * 180.34172 * 13 12 11 16 16 C 1.34513 * 109.29355 * 359.97438 * 15 13 12 17 17 C 1.38237 * 113.39418 * 0.45231 * 12 11 10 18 18 S 1.75626 * 124.95662 * 0.02562 * 10 8 7 19 19 C 1.55157 * 103.01870 * 218.66740 * 5 3 2 20 20 C 1.54903 * 101.58240 * 35.30681 * 19 5 3 21 21 N 1.47024 * 109.87775 * 65.71943 * 3 2 1 22 22 C 1.36931 * 125.64748 * 298.39313 * 21 3 2 23 23 H 1.08000 * 120.00156 * 333.71028 * 22 21 3 24 24 C 1.38810 * 120.00109 * 153.71456 * 22 21 3 25 25 N 1.31625 * 119.99544 * 334.83488 * 24 22 21 26 26 Si 1.86797 * 120.00288 * 154.83946 * 24 22 21 27 27 H 1.48501 * 109.47160 * 59.99892 * 26 24 22 28 28 H 1.48495 * 109.47190 * 299.99575 * 26 24 22 29 29 H 1.48506 * 109.47246 * 179.97438 * 26 24 22 30 30 H 1.08994 * 109.46986 * 291.79469 * 1 2 3 31 31 H 1.09004 * 109.47097 * 51.78906 * 1 2 3 32 32 H 1.08996 * 109.47405 * 171.79113 * 1 2 3 33 33 H 1.09008 * 109.46944 * 240.00143 * 2 1 3 34 34 H 1.08995 * 109.47385 * 120.00222 * 2 1 3 35 35 H 0.96996 * 120.00093 * 20.13881 * 7 5 3 36 36 H 1.08000 * 122.39822 * 359.97438 * 11 10 8 37 37 H 1.07998 * 125.35421 * 180.02562 * 15 13 12 38 38 H 1.08000 * 126.07313 * 179.97438 * 16 15 13 39 39 H 1.09007 * 111.00612 * 277.23401 * 19 5 3 40 40 H 1.09004 * 111.00567 * 153.38295 * 19 5 3 41 41 H 1.09002 * 110.37204 * 204.15080 * 20 19 5 42 42 H 1.09011 * 110.36743 * 81.83069 * 20 19 5 43 43 H 0.96996 * 120.00054 * 353.73502 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5806 1.4574 -0.0907 6 1 3.9934 0.5136 0.2652 7 7 4.0196 1.7330 -1.4609 8 6 5.2661 1.3985 -1.8492 9 8 6.0274 0.8678 -1.0613 10 6 5.7048 1.6733 -3.2188 11 6 6.9355 1.3848 -3.7144 12 6 7.1329 1.7304 -5.0448 13 7 8.1256 1.6785 -6.0270 14 1 9.0168 1.3135 -5.9110 15 6 7.6349 2.2247 -7.1743 16 6 6.3671 2.6249 -6.9693 17 6 6.0281 2.3225 -5.6278 18 16 4.7182 2.4314 -4.4584 19 6 3.9753 2.6211 0.8567 20 6 2.9034 2.4947 1.9678 21 7 1.6706 2.1034 1.2603 22 6 0.3933 2.3150 1.7059 23 1 -0.4193 2.3936 0.9988 24 6 0.1427 2.4287 3.0665 25 7 0.9578 1.8683 3.9348 26 14 -1.3514 3.3768 3.6650 27 1 -2.5844 2.7504 3.1243 28 1 -1.2648 4.7836 3.1976 29 1 -1.3929 3.3496 5.1493 30 1 -0.3633 0.3815 0.9542 31 1 -0.3633 0.6357 -0.8075 32 1 -0.3634 -1.0171 -0.1467 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 3.4132 2.1560 -2.0886 36 1 7.7049 0.9178 -3.1173 37 1 8.1780 2.3205 -8.1029 38 1 5.7228 3.0943 -7.6978 39 1 3.8991 3.5821 0.3479 40 1 4.9766 2.4732 1.2611 41 1 2.7643 3.4514 2.4714 42 1 3.1895 1.7255 2.6853 43 1 1.6808 1.3007 3.6249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087811172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:37 Heat of formation + Delta-G solvation = 33.840940 kcal Electronic energy + Delta-G solvation = -25878.191607 eV Core-core repulsion = 22243.269676 eV Total energy + Delta-G solvation = -3634.921931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 5.70 seconds Orbital eigenvalues (eV) -42.13441 -41.15248 -39.51809 -36.16068 -35.77573 -34.31402 -33.69378 -31.86063 -30.69564 -29.41195 -28.29921 -26.40564 -24.96379 -23.55141 -22.87631 -21.93143 -21.75959 -21.49757 -20.60185 -19.49333 -19.24397 -17.90419 -17.63340 -16.50608 -16.37540 -16.20524 -16.00982 -15.56765 -15.47197 -15.32706 -15.13571 -14.82354 -14.60412 -14.38935 -14.04826 -13.76617 -13.68096 -13.37547 -12.98246 -12.84868 -12.70576 -12.53725 -12.50886 -12.19252 -11.98889 -11.91017 -11.85951 -11.73872 -11.57591 -11.38002 -11.26559 -10.68207 -10.43308 -10.22864 -9.15413 -8.92470 -8.63743 -8.17208 -5.31978 -0.53409 0.40289 0.94121 1.35341 1.60859 1.68268 1.72194 1.81999 1.86394 2.10480 2.24749 2.68989 3.26784 3.41835 3.67872 3.71547 3.74266 3.94264 4.07192 4.15874 4.21559 4.25930 4.36608 4.42517 4.54792 4.55489 4.63877 4.74887 4.84913 4.91800 4.96622 4.97979 5.04918 5.05187 5.12613 5.20989 5.29165 5.49895 5.55143 5.64879 5.78615 5.84439 6.33411 6.39928 6.60538 6.95385 7.00750 7.75367 8.36685 9.09085 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.002563 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.248891 B =10921.350111 C =11180.683858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C 0.155 3.845 4 H 0.051 0.949 5 C 0.152 3.848 6 H 0.081 0.919 7 N -0.700 5.700 8 C 0.594 3.406 9 O -0.571 6.571 10 C -0.269 4.269 11 C -0.021 4.021 12 C -0.006 4.006 13 N -0.546 5.546 14 H 0.435 0.565 15 C 0.092 3.908 16 C -0.200 4.200 17 C -0.195 4.195 18 S 0.173 5.827 19 C -0.129 4.129 20 C 0.149 3.851 21 N -0.606 5.606 22 C -0.313 4.313 23 H 0.065 0.935 24 C -0.080 4.080 25 N -0.948 5.948 26 Si 1.112 2.888 27 H -0.273 1.273 28 H -0.281 1.281 29 H -0.298 1.298 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.032 0.968 35 H 0.408 0.592 36 H 0.148 0.852 37 H 0.227 0.773 38 H 0.165 0.835 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.027 0.973 42 H 0.005 0.995 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.527 1.062 -26.661 29.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.158 4.158 3 C 0.049 3.951 4 H 0.068 0.932 5 C 0.046 3.954 6 H 0.099 0.901 7 N -0.351 5.351 8 C 0.382 3.618 9 O -0.452 6.452 10 C -0.389 4.389 11 C -0.057 4.057 12 C -0.119 4.119 13 N -0.148 5.148 14 H 0.276 0.724 15 C -0.043 4.043 16 C -0.229 4.229 17 C -0.318 4.318 18 S 0.436 5.564 19 C -0.169 4.169 20 C 0.023 3.977 21 N -0.331 5.331 22 C -0.442 4.442 23 H 0.082 0.918 24 C -0.277 4.277 25 N -0.591 5.591 26 Si 0.937 3.063 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.224 1.224 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.244 0.756 36 H 0.166 0.834 37 H 0.244 0.756 38 H 0.182 0.818 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.045 0.955 42 H 0.023 0.977 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.801 1.744 -24.694 27.424 hybrid contribution 2.311 -1.340 -0.759 2.777 sum 14.112 0.404 -25.453 29.106 Atomic orbital electron populations 1.21764 0.95419 1.00298 1.02428 1.21822 0.97188 0.96950 0.99862 1.21308 0.90752 0.92676 0.90408 0.93169 1.21750 0.94365 0.98238 0.81043 0.90068 1.45677 1.13946 1.62150 1.13281 1.17119 0.81518 0.77413 0.85751 1.90806 1.54453 1.45218 1.54740 1.23445 1.00393 1.16772 0.98265 1.19342 0.96238 0.98140 0.92006 1.17931 0.91250 1.10912 0.91827 1.42050 1.13732 1.50809 1.08237 0.72435 1.22712 0.94466 0.96111 0.91030 1.20574 0.97758 1.11414 0.93141 1.23626 0.97749 1.09346 1.01095 1.83634 1.12361 1.61513 0.98855 1.23055 0.98293 0.98737 0.96770 1.21382 0.86361 0.96481 0.93472 1.44710 1.01588 1.66157 1.20692 1.19790 0.84721 1.47097 0.92585 0.91762 1.27091 1.06020 1.01436 0.93121 1.70876 1.20159 1.31204 1.36838 0.82891 0.72824 0.75672 0.74931 1.19909 1.20759 1.22433 0.92751 0.92997 0.93044 0.91393 0.94950 0.75560 0.83416 0.75620 0.81758 0.90358 0.90839 0.95466 0.97715 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.48 8.98 71.98 0.65 -4.83 16 2 C -0.12 -4.61 5.47 30.59 0.17 -4.44 16 3 C 0.16 6.22 3.00 45.35 0.14 6.36 16 4 H 0.05 1.92 7.69 -2.39 -0.02 1.90 16 5 C 0.15 5.59 2.76 46.18 0.13 5.71 16 6 H 0.08 3.27 7.40 -2.39 -0.02 3.25 16 7 N -0.70 -21.56 5.20 -441.10 -2.29 -23.86 16 8 C 0.59 19.12 7.77 86.37 0.67 19.79 16 9 O -0.57 -22.25 16.50 -4.46 -0.07 -22.32 16 10 C -0.27 -7.09 6.38 23.83 0.15 -6.94 16 11 C -0.02 -0.49 9.88 21.85 0.22 -0.27 16 12 C -0.01 -0.12 7.67 38.03 0.29 0.17 16 13 N -0.55 -5.69 6.21 -188.38 -1.17 -6.86 16 14 H 0.44 1.80 8.96 -92.71 -0.83 0.97 16 15 C 0.09 0.66 11.85 83.16 0.99 1.64 16 16 C -0.20 -2.58 10.85 22.26 0.24 -2.34 16 17 C -0.20 -3.82 7.31 23.11 0.17 -3.65 16 18 S 0.17 3.70 22.29 -56.49 -1.26 2.44 16 19 C -0.13 -5.02 6.77 31.98 0.22 -4.80 16 20 C 0.15 7.18 5.56 86.85 0.48 7.66 16 21 N -0.61 -29.81 2.92 -668.25 -1.95 -31.76 16 22 C -0.31 -16.84 7.22 84.03 0.61 -16.24 16 23 H 0.06 3.40 7.24 -2.91 -0.02 3.38 16 24 C -0.08 -4.54 5.17 84.86 0.44 -4.10 16 25 N -0.95 -58.40 13.05 21.65 0.28 -58.12 16 26 Si 1.11 50.96 29.99 68.60 2.06 53.01 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 28 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 29 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 30 H 0.05 2.53 5.52 -2.39 -0.01 2.52 16 31 H 0.05 1.84 8.13 -2.39 -0.02 1.82 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.41 10.79 7.38 -92.71 -0.68 10.11 16 36 H 0.15 3.34 8.00 -2.91 -0.02 3.31 16 37 H 0.23 -0.66 8.06 -2.91 -0.02 -0.69 16 38 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.08 2.86 8.14 -2.38 -0.02 2.84 16 40 H 0.07 2.77 8.14 -2.38 -0.02 2.76 16 41 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.01 0.27 6.73 -2.38 -0.02 0.25 16 43 H 0.25 16.02 6.20 -92.71 -0.57 15.44 16 Total: -1.00 -74.38 362.34 0.88 -73.50 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -0.26 Total: 20.26 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 5.55 Total: -6.28 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -5.13 Total: -120.60 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.07 Total: -22.32 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.06 Total: 53.01 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.26 Total: 2.44 kcal Total: -74.38 0.88 -73.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087811172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.338 kcal (2) G-P(sol) polarization free energy of solvation -74.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.70 seconds