Wall clock time and date at job start Tue Mar 31 2020 18:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.91605 * 2 1 4 4 C 1.55123 * 111.16216 * 236.07491 * 2 1 3 5 5 N 1.47421 * 104.94191 * 205.13277 * 4 2 1 6 6 C 1.36940 * 125.64806 * 203.96856 * 5 4 2 7 7 H 1.07997 * 120.00467 * 180.02562 * 6 5 4 8 8 C 1.38814 * 119.99958 * 0.03821 * 6 5 4 9 9 N 1.31619 * 119.99974 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99981 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47501 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47326 * 120.00240 * 10 8 6 13 13 H 1.48507 * 109.46853 * 239.99664 * 10 8 6 14 14 C 1.47023 * 108.70668 * 24.00161 * 5 4 2 15 15 C 1.54326 * 107.26739 * 358.94130 * 14 5 4 16 16 H 1.08996 * 110.72071 * 96.35056 * 15 14 5 17 17 C 1.52999 * 110.71898 * 219.44262 * 15 14 5 18 18 N 1.46501 * 109.47301 * 291.15991 * 17 15 14 19 19 C 1.34781 * 120.00235 * 179.97438 * 18 17 15 20 20 O 1.21724 * 119.99797 * 359.97438 * 19 18 17 21 21 C 1.46487 * 120.00138 * 179.97438 * 19 18 17 22 22 C 1.36115 * 125.71325 * 180.02562 * 21 19 18 23 23 C 1.42223 * 107.62958 * 179.73663 * 22 21 19 24 24 C 1.45586 * 140.78089 * 179.97438 * 23 22 21 25 25 C 1.31817 * 114.63388 * 179.97438 * 24 23 22 26 26 S 1.75349 * 111.24430 * 0.02562 * 25 24 23 27 27 C 1.38179 * 106.99169 * 359.97438 * 23 22 21 28 28 N 1.37457 * 108.16983 * 0.02562 * 27 23 22 29 29 H 0.97002 * 125.68385 * 180.02562 * 28 27 23 30 30 H 1.09002 * 109.47269 * 296.09846 * 1 2 3 31 31 H 1.08998 * 109.47619 * 56.09648 * 1 2 3 32 32 H 1.08999 * 109.47401 * 176.10026 * 1 2 3 33 33 H 1.08996 * 110.41873 * 86.20062 * 4 2 1 34 34 H 1.09003 * 110.20468 * 323.94977 * 4 2 1 35 35 H 0.96997 * 120.00228 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.88244 * 239.52568 * 14 5 4 37 37 H 1.08994 * 110.01339 * 118.42863 * 14 5 4 38 38 H 1.08994 * 109.47427 * 171.15757 * 17 15 14 39 39 H 1.09008 * 109.47296 * 51.15751 * 17 15 14 40 40 H 0.96998 * 119.99604 * 0.02562 * 18 17 15 41 41 H 1.07997 * 126.18261 * 359.71269 * 22 21 19 42 42 H 1.07999 * 122.68678 * 359.97438 * 24 23 22 43 43 H 1.07997 * 124.37514 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0900 -0.8074 -1.2004 5 7 3.4297 -1.2474 -0.7706 6 6 4.4674 -1.5741 -1.6023 7 1 5.4142 -1.8868 -1.1874 8 6 4.3025 -1.5030 -2.9788 9 7 3.1489 -1.1212 -3.4845 10 14 5.7177 -1.9493 -4.1133 11 1 6.8975 -2.3429 -3.3019 12 1 5.3153 -3.0825 -4.9846 13 1 6.0656 -0.7767 -4.9555 14 6 3.4671 -1.2781 0.6988 15 6 2.0861 -0.8079 1.2022 16 1 1.4450 -1.6614 1.4229 17 6 2.2349 0.0875 2.4338 18 7 2.7029 -0.7144 3.5670 19 6 2.9073 -0.1328 4.7655 20 8 2.7035 1.0590 4.9062 21 6 3.3747 -0.9348 5.8987 22 6 3.6177 -0.4697 7.1547 23 6 4.0474 -1.5706 7.9460 24 6 4.4726 -1.8872 9.3019 25 6 4.7764 -3.1544 9.5007 26 16 4.5710 -4.0945 8.0349 27 6 4.0482 -2.6821 7.1250 28 7 3.6367 -2.2907 5.8732 29 1 3.5448 -2.8703 5.1009 30 1 -0.3634 0.4521 0.9229 31 1 -0.3634 0.5732 -0.8529 32 1 -0.3634 -1.0253 -0.0699 33 1 2.1641 -0.1732 -2.0837 34 1 1.4546 -1.6695 -1.4034 35 1 3.0334 -1.0719 -4.4463 36 1 4.2434 -0.6058 1.0641 37 1 3.6624 -2.2927 1.0459 38 1 1.2706 0.5331 2.6777 39 1 2.9572 0.8766 2.2242 40 1 2.8664 -1.6639 3.4545 41 1 3.5050 0.5508 7.4896 42 1 4.5343 -1.1433 10.0824 43 1 5.1087 -3.5609 10.4444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092869416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:26 Heat of formation + Delta-G solvation = 54.882864 kcal Electronic energy + Delta-G solvation = -25359.987474 eV Core-core repulsion = 21725.977989 eV Total energy + Delta-G solvation = -3634.009485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.56496 -39.42331 -37.99048 -35.63673 -34.81510 -33.01877 -30.81846 -30.74079 -29.90944 -28.38820 -26.08143 -25.25241 -23.67993 -23.17847 -22.23269 -20.44500 -20.06956 -19.92553 -19.42036 -19.06943 -17.09028 -16.74830 -16.05063 -15.69313 -15.31358 -15.14410 -14.82465 -14.67690 -14.29067 -14.01357 -13.77915 -13.67410 -13.20398 -13.01738 -12.81411 -12.67665 -12.14875 -11.99407 -11.93223 -11.62034 -11.50390 -11.21260 -11.11856 -10.92840 -10.85694 -10.44824 -10.19632 -10.04250 -9.97071 -9.82885 -9.78180 -9.45947 -9.15512 -8.70758 -8.57503 -7.96044 -6.89344 -5.70730 -3.12878 0.77177 1.02989 1.13820 1.68637 2.61460 2.80496 3.00020 3.24276 3.35952 3.41631 3.44022 4.36275 4.43820 4.58179 4.72790 5.00209 5.13978 5.15910 5.22006 5.30648 5.43996 5.44104 5.51495 5.68068 5.79636 5.80724 5.89612 5.98831 6.02376 6.12615 6.14316 6.18975 6.28263 6.42014 6.46737 6.52352 6.54080 6.72142 6.83314 6.86743 7.34646 7.47640 7.57876 7.81142 8.00431 8.31005 9.16714 9.77357 10.41723 11.33030 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.002430 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.462200 B =11519.293003 C =12762.683402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.159 3.841 5 N -0.604 5.604 6 C -0.224 4.224 7 H 0.077 0.923 8 C -0.011 4.011 9 N -0.921 5.921 10 Si 0.914 3.086 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.290 1.290 14 C 0.141 3.859 15 C -0.111 4.111 16 H 0.076 0.924 17 C 0.133 3.867 18 N -0.722 5.722 19 C 0.585 3.415 20 O -0.525 6.525 21 C -0.005 4.005 22 C -0.070 4.070 23 C -0.164 4.164 24 C -0.069 4.069 25 C -0.223 4.223 26 S 0.133 5.867 27 C -0.008 4.008 28 N -0.525 5.525 29 H 0.421 0.579 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.107 0.893 34 H 0.013 0.987 35 H 0.252 0.748 36 H 0.024 0.976 37 H 0.016 0.984 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.395 0.605 41 H 0.157 0.843 42 H 0.145 0.855 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.558 -3.730 23.580 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.091 0.909 4 C 0.034 3.966 5 N -0.330 5.330 6 C -0.352 4.352 7 H 0.095 0.905 8 C -0.206 4.206 9 N -0.570 5.570 10 Si 0.745 3.255 11 H -0.205 1.205 12 H -0.217 1.217 13 H -0.217 1.217 14 C 0.015 3.985 15 C -0.130 4.130 16 H 0.094 0.906 17 C 0.010 3.990 18 N -0.372 5.372 19 C 0.371 3.629 20 O -0.401 6.401 21 C -0.118 4.118 22 C -0.098 4.098 23 C -0.176 4.176 24 C -0.100 4.100 25 C -0.357 4.357 26 S 0.386 5.614 27 C -0.237 4.237 28 N -0.128 5.128 29 H 0.260 0.740 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.031 0.969 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.033 0.967 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.229 0.771 41 H 0.175 0.825 42 H 0.163 0.837 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.479 -4.391 22.929 23.393 hybrid contribution 0.596 0.265 -0.680 0.942 sum -0.883 -4.126 22.249 22.646 Atomic orbital electron populations 1.21650 0.95399 1.01428 1.00757 1.22637 0.94643 0.99565 0.96244 0.90920 1.22031 0.84005 0.95866 0.94670 1.44481 1.10737 1.78836 0.98921 1.19108 0.91115 1.37737 0.87238 0.90512 1.24796 0.97332 1.01877 0.96635 1.69799 1.22520 1.53663 1.10970 0.86000 0.81083 0.77655 0.80766 1.20542 1.21727 1.21663 1.21329 0.93421 0.96940 0.86825 1.22512 0.98654 0.98169 0.93700 0.90551 1.21538 0.99877 0.93873 0.83731 1.45989 1.68167 1.12787 1.10274 1.16948 0.77827 0.86722 0.81372 1.90874 1.51883 1.13970 1.83419 1.20124 1.12513 0.82256 0.96874 1.20739 1.00594 0.98548 0.89901 1.19393 1.11360 0.93210 0.93675 1.20334 0.99103 0.96088 0.94464 1.24880 1.11894 0.97172 1.01769 1.84000 1.71759 1.04947 1.00671 1.23583 1.09982 1.00403 0.89776 1.41442 1.54731 1.07844 1.08796 0.73993 0.93602 0.92568 0.92976 0.87514 0.96916 0.93717 0.95788 0.96664 0.91156 0.90815 0.77118 0.82499 0.83722 0.81247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.31 37.16 0.35 -1.65 16 2 C -0.11 -1.97 3.10 -88.36 -0.27 -2.24 16 3 H 0.07 1.32 8.05 -51.93 -0.42 0.91 16 4 C 0.16 3.72 5.37 -2.42 -0.01 3.71 16 5 N -0.60 -15.06 3.40 -169.94 -0.58 -15.63 16 6 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 7 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 8 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 9 N -0.92 -26.47 10.09 55.49 0.56 -25.91 16 10 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.14 2.77 6.64 -3.06 -0.02 2.75 16 15 C -0.11 -1.76 2.45 -88.79 -0.22 -1.98 16 16 H 0.08 1.13 8.04 -51.93 -0.42 0.72 16 17 C 0.13 1.88 5.00 -4.04 -0.02 1.85 16 18 N -0.72 -8.93 5.43 -61.67 -0.33 -9.27 16 19 C 0.59 8.02 7.78 -12.94 -0.10 7.92 16 20 O -0.53 -8.91 16.85 5.17 0.09 -8.83 16 21 C 0.00 -0.05 6.97 -82.47 -0.57 -0.63 16 22 C -0.07 -0.82 10.58 -38.82 -0.41 -1.23 16 23 C -0.16 -1.77 6.80 -105.46 -0.72 -2.49 16 24 C -0.07 -0.58 10.42 -38.55 -0.40 -0.98 16 25 C -0.22 -1.61 11.03 28.84 0.32 -1.29 16 26 S 0.13 1.07 23.24 -107.50 -2.50 -1.43 16 27 C -0.01 -0.09 8.41 -15.05 -0.13 -0.21 16 28 N -0.52 -5.19 6.08 -7.94 -0.05 -5.23 16 29 H 0.42 3.13 8.14 -40.82 -0.33 2.79 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.76 8.08 -51.93 -0.42 0.35 16 33 H 0.11 2.85 5.87 -51.93 -0.30 2.55 16 34 H 0.01 0.32 7.99 -51.93 -0.41 -0.10 16 35 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.02 0.49 7.73 -51.93 -0.40 0.08 16 37 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.16 8.01 -51.92 -0.42 0.74 16 40 H 0.40 4.02 7.47 -40.82 -0.31 3.72 16 41 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -32.56 367.82 -10.69 -43.24 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.93 Total: 3.84 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.46 Total: -3.17 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.40 Total: -56.04 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.50 Total: -1.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.56 -10.69 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092869416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.128 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds