Wall clock time and date at job start Tue Mar 31 2020 18:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.91605 * 2 1 4 4 C 1.55123 * 111.16216 * 236.07491 * 2 1 3 5 5 N 1.47421 * 104.94191 * 205.13277 * 4 2 1 6 6 C 1.36940 * 125.64806 * 203.96856 * 5 4 2 7 7 H 1.07997 * 120.00467 * 180.02562 * 6 5 4 8 8 C 1.38814 * 119.99958 * 0.03821 * 6 5 4 9 9 N 1.31619 * 119.99974 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99981 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47501 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47326 * 120.00240 * 10 8 6 13 13 H 1.48507 * 109.46853 * 239.99664 * 10 8 6 14 14 C 1.47023 * 108.70668 * 24.00161 * 5 4 2 15 15 C 1.54326 * 107.26739 * 358.94130 * 14 5 4 16 16 H 1.08996 * 110.72071 * 96.35056 * 15 14 5 17 17 C 1.52999 * 110.71898 * 219.44262 * 15 14 5 18 18 N 1.46501 * 109.47301 * 291.15991 * 17 15 14 19 19 C 1.34781 * 120.00235 * 179.97438 * 18 17 15 20 20 O 1.21724 * 119.99797 * 359.97438 * 19 18 17 21 21 C 1.46487 * 120.00138 * 179.97438 * 19 18 17 22 22 C 1.36115 * 125.71325 * 180.02562 * 21 19 18 23 23 C 1.42223 * 107.62958 * 179.73663 * 22 21 19 24 24 C 1.45586 * 140.78089 * 179.97438 * 23 22 21 25 25 C 1.31817 * 114.63388 * 179.97438 * 24 23 22 26 26 S 1.75349 * 111.24430 * 0.02562 * 25 24 23 27 27 C 1.38179 * 106.99169 * 359.97438 * 23 22 21 28 28 N 1.37457 * 108.16983 * 0.02562 * 27 23 22 29 29 H 0.97002 * 125.68385 * 180.02562 * 28 27 23 30 30 H 1.09002 * 109.47269 * 296.09846 * 1 2 3 31 31 H 1.08998 * 109.47619 * 56.09648 * 1 2 3 32 32 H 1.08999 * 109.47401 * 176.10026 * 1 2 3 33 33 H 1.08996 * 110.41873 * 86.20062 * 4 2 1 34 34 H 1.09003 * 110.20468 * 323.94977 * 4 2 1 35 35 H 0.96997 * 120.00228 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.88244 * 239.52568 * 14 5 4 37 37 H 1.08994 * 110.01339 * 118.42863 * 14 5 4 38 38 H 1.08994 * 109.47427 * 171.15757 * 17 15 14 39 39 H 1.09008 * 109.47296 * 51.15751 * 17 15 14 40 40 H 0.96998 * 119.99604 * 0.02562 * 18 17 15 41 41 H 1.07997 * 126.18261 * 359.71269 * 22 21 19 42 42 H 1.07999 * 122.68678 * 359.97438 * 24 23 22 43 43 H 1.07997 * 124.37514 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0900 -0.8074 -1.2004 5 7 3.4297 -1.2474 -0.7706 6 6 4.4674 -1.5741 -1.6023 7 1 5.4142 -1.8868 -1.1874 8 6 4.3025 -1.5030 -2.9788 9 7 3.1489 -1.1212 -3.4845 10 14 5.7177 -1.9493 -4.1133 11 1 6.8975 -2.3429 -3.3019 12 1 5.3153 -3.0825 -4.9846 13 1 6.0656 -0.7767 -4.9555 14 6 3.4671 -1.2781 0.6988 15 6 2.0861 -0.8079 1.2022 16 1 1.4450 -1.6614 1.4229 17 6 2.2349 0.0875 2.4338 18 7 2.7029 -0.7144 3.5670 19 6 2.9073 -0.1328 4.7655 20 8 2.7035 1.0590 4.9062 21 6 3.3747 -0.9348 5.8987 22 6 3.6177 -0.4697 7.1547 23 6 4.0474 -1.5706 7.9460 24 6 4.4726 -1.8872 9.3019 25 6 4.7764 -3.1544 9.5007 26 16 4.5710 -4.0945 8.0349 27 6 4.0482 -2.6821 7.1250 28 7 3.6367 -2.2907 5.8732 29 1 3.5448 -2.8703 5.1009 30 1 -0.3634 0.4521 0.9229 31 1 -0.3634 0.5732 -0.8529 32 1 -0.3634 -1.0253 -0.0699 33 1 2.1641 -0.1732 -2.0837 34 1 1.4546 -1.6695 -1.4034 35 1 3.0334 -1.0719 -4.4463 36 1 4.2434 -0.6058 1.0641 37 1 3.6624 -2.2927 1.0459 38 1 1.2706 0.5331 2.6777 39 1 2.9572 0.8766 2.2242 40 1 2.8664 -1.6639 3.4545 41 1 3.5050 0.5508 7.4896 42 1 4.5343 -1.1433 10.0824 43 1 5.1087 -3.5609 10.4444 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092869416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:25 Heat of formation + Delta-G solvation = 34.208234 kcal Electronic energy + Delta-G solvation = -25360.883993 eV Core-core repulsion = 21725.977989 eV Total energy + Delta-G solvation = -3634.906004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.39109 -40.56372 -39.47584 -36.36445 -36.12849 -34.71904 -32.58388 -31.55897 -31.19319 -29.39369 -27.85104 -26.69725 -24.93884 -24.09920 -23.35455 -21.59660 -21.46678 -21.06868 -20.28727 -20.13850 -18.87301 -17.86578 -17.29544 -16.84665 -16.66683 -16.09210 -15.93636 -15.62646 -15.47702 -15.39266 -15.10439 -14.71358 -14.53309 -14.32456 -14.06053 -13.72043 -13.55663 -13.41819 -13.05998 -12.80494 -12.79011 -12.71723 -12.59731 -12.49821 -11.96329 -11.89093 -11.74907 -11.68044 -11.49215 -11.42358 -11.07130 -10.77002 -10.58230 -10.26061 -9.29486 -8.90073 -8.65604 -7.79514 -5.23962 0.08436 0.17782 0.42959 1.07741 1.44674 1.45497 1.55552 1.81038 1.90736 2.10949 2.30266 2.47065 3.29717 3.51944 3.63201 3.76470 3.81764 3.85795 3.94210 4.01944 4.33648 4.41966 4.48104 4.59587 4.63998 4.72998 4.75207 4.77534 4.82290 4.93489 5.06937 5.10109 5.13398 5.19550 5.28014 5.37267 5.37529 5.42814 5.48272 5.64187 5.70773 5.83080 6.10405 6.30312 6.36986 6.96414 7.09444 7.76928 8.40106 9.22056 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.002430 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.462200 B =11519.293003 C =12762.683402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.067 0.933 4 C 0.162 3.838 5 N -0.628 5.628 6 C -0.238 4.238 7 H 0.079 0.921 8 C -0.067 4.067 9 N -0.947 5.947 10 Si 0.978 3.022 11 H -0.268 1.268 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.137 3.863 15 C -0.090 4.090 16 H 0.096 0.904 17 C 0.144 3.856 18 N -0.712 5.712 19 C 0.589 3.411 20 O -0.563 6.563 21 C -0.019 4.019 22 C -0.080 4.080 23 C -0.182 4.182 24 C -0.086 4.086 25 C -0.212 4.212 26 S 0.152 5.848 27 C -0.022 4.022 28 N -0.518 5.518 29 H 0.431 0.569 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.069 0.931 34 H -0.009 1.009 35 H 0.247 0.753 36 H 0.019 0.981 37 H 0.028 0.972 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.408 0.592 41 H 0.158 0.842 42 H 0.165 0.835 43 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 -4.960 25.963 26.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.085 0.915 4 C 0.037 3.963 5 N -0.354 5.354 6 C -0.367 4.367 7 H 0.096 0.904 8 C -0.260 4.260 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.192 1.192 12 H -0.218 1.218 13 H -0.219 1.219 14 C 0.012 3.988 15 C -0.109 4.109 16 H 0.115 0.885 17 C 0.021 3.979 18 N -0.363 5.363 19 C 0.377 3.623 20 O -0.442 6.442 21 C -0.132 4.132 22 C -0.108 4.108 23 C -0.194 4.194 24 C -0.116 4.116 25 C -0.346 4.346 26 S 0.405 5.595 27 C -0.251 4.251 28 N -0.122 5.122 29 H 0.272 0.728 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.009 0.991 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.046 0.954 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.243 0.757 41 H 0.176 0.824 42 H 0.182 0.818 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.228 -5.660 25.334 25.987 hybrid contribution 0.573 0.581 -1.331 1.561 sum -0.655 -5.079 24.003 24.543 Atomic orbital electron populations 1.21605 0.92678 1.01968 1.02275 1.22469 0.96767 0.98416 0.94392 0.91468 1.21807 0.83686 0.94938 0.95915 1.44801 1.10662 1.78868 1.01088 1.19456 0.91995 1.37200 0.88060 0.90352 1.25619 0.99725 1.02505 0.98123 1.70058 1.24196 1.54754 1.10701 0.85010 0.78690 0.76947 0.78680 1.19211 1.21817 1.21901 1.21512 0.95616 0.97579 0.84136 1.22343 0.96463 0.98639 0.93467 0.88540 1.21297 1.00152 0.93112 0.83367 1.45818 1.67685 1.13275 1.09504 1.17096 0.77104 0.86331 0.81782 1.90850 1.53678 1.15594 1.84062 1.19822 1.13915 0.83119 0.96331 1.20922 1.00579 0.99098 0.90251 1.19740 1.11657 0.92984 0.95055 1.20559 0.99892 0.97199 0.93970 1.25316 1.10178 0.96590 1.02479 1.83999 1.71065 1.03845 1.00575 1.24014 1.09715 1.01579 0.89804 1.41348 1.54413 1.07221 1.09263 0.72819 0.90672 0.92700 0.92706 0.91339 0.99121 0.94330 0.96251 0.95397 0.89903 0.92426 0.75676 0.82437 0.81766 0.78157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.31 71.98 0.67 -2.89 16 2 C -0.10 -3.51 3.10 -9.33 -0.03 -3.54 16 3 H 0.07 2.43 8.05 -2.39 -0.02 2.41 16 4 C 0.16 7.75 5.37 86.93 0.47 8.22 16 5 N -0.63 -31.77 3.40 -691.57 -2.35 -34.12 16 6 C -0.24 -13.27 10.27 84.03 0.86 -12.41 16 7 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 8 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 9 N -0.95 -56.21 10.09 21.65 0.22 -55.99 16 10 Si 0.98 45.59 29.55 68.60 2.03 47.61 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 12 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 13 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 14 C 0.14 5.27 6.64 86.73 0.58 5.85 16 15 C -0.09 -2.71 2.45 -9.61 -0.02 -2.74 16 16 H 0.10 2.58 8.04 -2.39 -0.02 2.57 16 17 C 0.14 3.84 5.00 86.38 0.43 4.27 16 18 N -0.71 -16.53 5.43 -467.24 -2.54 -19.07 16 19 C 0.59 15.72 7.78 86.39 0.67 16.40 16 20 O -0.56 -19.00 16.85 -4.43 -0.07 -19.07 16 21 C -0.02 -0.43 6.97 39.81 0.28 -0.15 16 22 C -0.08 -1.84 10.58 22.77 0.24 -1.60 16 23 C -0.18 -3.70 6.80 -20.41 -0.14 -3.84 16 24 C -0.09 -1.25 10.42 23.39 0.24 -1.01 16 25 C -0.21 -2.41 11.03 67.04 0.74 -1.67 16 26 S 0.15 2.08 23.24 -56.49 -1.31 0.77 16 27 C -0.02 -0.42 8.41 83.80 0.71 0.29 16 28 N -0.52 -9.57 6.08 -179.04 -1.09 -10.66 16 29 H 0.43 5.71 8.14 -92.71 -0.75 4.96 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.50 8.08 -2.39 -0.02 1.49 16 33 H 0.07 3.83 5.87 -2.39 -0.01 3.81 16 34 H -0.01 -0.47 7.99 -2.39 -0.02 -0.49 16 35 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 36 H 0.02 0.77 7.73 -2.39 -0.02 0.75 16 37 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 1.76 8.01 -2.38 -0.02 1.74 16 40 H 0.41 7.47 7.47 -92.71 -0.69 6.78 16 41 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 42 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 43 H 0.20 0.94 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -72.31 367.82 0.65 -71.66 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -0.40 Total: 17.02 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 6.16 Total: 1.85 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -5.75 Total: -119.84 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.07 Total: -19.07 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.31 Total: 0.77 kcal Total: -72.31 0.65 -71.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092869416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.868 kcal (2) G-P(sol) polarization free energy of solvation -72.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds