Wall clock time and date at job start Tue Mar 31 2020 18:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 110.64006 * 2 1 4 4 C 1.54332 * 111.00259 * 236.92147 * 2 1 3 5 5 N 1.47026 * 107.26211 * 219.60031 * 4 2 1 6 6 C 1.36936 * 125.64605 * 178.85096 * 5 4 2 7 7 H 1.08000 * 120.00166 * 174.40973 * 6 5 4 8 8 C 1.38820 * 119.99958 * 354.13039 * 6 5 4 9 9 N 1.31619 * 119.99959 * 7.05077 * 8 6 5 10 10 Si 1.86800 * 119.99940 * 187.04361 * 8 6 5 11 11 H 1.48496 * 109.47026 * 94.98992 * 10 8 6 12 12 H 1.48495 * 109.46947 * 214.98885 * 10 8 6 13 13 H 1.48503 * 109.47295 * 334.99239 * 10 8 6 14 14 C 1.47421 * 108.70366 * 358.58629 * 5 4 2 15 15 C 1.54905 * 104.83372 * 24.35676 * 14 5 4 16 16 H 1.09002 * 111.00827 * 81.06181 * 15 14 5 17 17 C 1.53000 * 111.00771 * 204.87646 * 15 14 5 18 18 N 1.46496 * 109.47118 * 293.54828 * 17 15 14 19 19 C 1.34770 * 120.00437 * 179.97438 * 18 17 15 20 20 O 1.21736 * 119.99707 * 359.97438 * 19 18 17 21 21 C 1.46413 * 120.00795 * 180.02562 * 19 18 17 22 22 C 1.35773 * 124.96369 * 180.02562 * 21 19 18 23 23 C 1.38868 * 115.18513 * 179.97438 * 22 21 19 24 24 N 1.39753 * 139.91174 * 179.97438 * 23 22 21 25 25 H 0.96991 * 125.63404 * 359.97438 * 24 23 22 26 26 C 1.36219 * 108.72930 * 179.97438 * 24 23 22 27 27 C 1.34499 * 109.29878 * 359.97438 * 26 24 23 28 28 C 1.38241 * 113.39341 * 359.97438 * 23 22 21 29 29 S 1.75625 * 124.95183 * 359.69030 * 21 19 18 30 30 H 1.08994 * 109.47008 * 296.85981 * 1 2 3 31 31 H 1.09002 * 109.46873 * 56.86025 * 1 2 3 32 32 H 1.09003 * 109.46912 * 176.85414 * 1 2 3 33 33 H 1.08999 * 109.99368 * 100.12953 * 4 2 1 34 34 H 1.08999 * 109.78130 * 338.95487 * 4 2 1 35 35 H 0.96994 * 119.99988 * 179.97438 * 9 8 6 36 36 H 1.09008 * 110.36516 * 143.19385 * 14 5 4 37 37 H 1.08998 * 110.36626 * 265.40279 * 14 5 4 38 38 H 1.08998 * 109.46767 * 53.54463 * 17 15 14 39 39 H 1.08991 * 109.47523 * 173.54436 * 17 15 14 40 40 H 0.97010 * 120.00185 * 359.97438 * 18 17 15 41 41 H 1.08000 * 122.40779 * 359.93211 * 22 21 19 42 42 H 1.08006 * 125.34608 * 180.02562 * 26 24 23 43 43 H 1.08006 * 126.07736 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0832 -0.7864 -1.2073 5 7 3.2495 -1.5470 -0.7352 6 6 4.0126 -2.3918 -1.4962 7 1 4.9047 -2.8362 -1.0801 8 6 3.6364 -2.6815 -2.8007 9 7 2.6281 -2.0404 -3.3527 10 14 4.5614 -3.9812 -3.7727 11 1 3.8556 -5.2824 -3.6557 12 1 4.6251 -3.5792 -5.2008 13 1 5.9389 -4.1151 -3.2342 14 6 3.4652 -1.2446 0.6914 15 6 2.0790 -0.7933 1.2152 16 1 1.4469 -1.6528 1.4384 17 6 2.2235 0.1105 2.4412 18 7 2.7729 -0.6640 3.5568 19 6 2.9883 -0.0708 4.7476 20 8 2.7267 1.1088 4.8961 21 6 3.5379 -0.8447 5.8624 22 6 3.7936 -0.3508 7.1010 23 6 4.3145 -1.2661 8.0062 24 7 4.7445 -1.3300 9.3344 25 1 4.7477 -0.5918 9.9635 26 6 5.1584 -2.6004 9.5995 27 6 5.0113 -3.3552 8.4960 28 6 4.4795 -2.5312 7.4740 29 16 3.9547 -2.5494 5.7950 30 1 -0.3633 0.4643 0.9168 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3633 -1.0262 -0.0564 33 1 2.3849 -0.0961 -1.9950 34 1 1.3217 -1.4702 -1.5823 35 1 2.3655 -2.2426 -4.2642 36 1 3.7993 -2.1363 1.2219 37 1 4.1944 -0.4422 0.8031 38 1 2.8951 0.9362 2.2067 39 1 1.2462 0.5048 2.7192 40 1 2.9817 -1.6040 3.4384 41 1 3.6061 0.6800 7.3632 42 1 5.5433 -2.9472 10.5471 43 1 5.2565 -4.4031 8.4048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093160602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:35 Heat of formation + Delta-G solvation = 54.907489 kcal Electronic energy + Delta-G solvation = -25280.269547 eV Core-core repulsion = 21646.261130 eV Total energy + Delta-G solvation = -3634.008417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.46332 -39.68691 -37.98745 -35.33373 -34.61636 -32.92996 -31.23250 -30.71289 -29.78514 -28.17254 -26.00191 -25.26669 -24.00136 -22.69012 -21.79259 -21.00032 -20.18505 -19.87145 -19.09535 -18.62584 -17.08777 -16.63068 -16.00592 -15.68644 -15.45677 -15.01331 -14.74191 -14.52100 -14.24516 -13.82387 -13.78383 -13.66056 -13.22423 -13.02006 -12.88133 -12.50378 -12.21812 -11.91470 -11.71603 -11.59654 -11.34708 -11.21128 -11.08962 -10.78803 -10.76434 -10.27766 -10.06081 -9.97050 -9.95562 -9.89999 -9.69409 -9.56301 -9.02298 -8.55787 -8.37928 -7.90456 -6.80541 -5.70533 -3.02736 0.33773 1.23193 1.77487 2.15619 2.35993 2.65377 3.18098 3.23242 3.41522 3.46841 3.48801 4.50770 4.55506 4.59701 4.72015 4.99799 5.12024 5.18228 5.24015 5.34294 5.50425 5.54712 5.57925 5.65773 5.73923 5.77967 5.90074 6.04762 6.10927 6.19921 6.21193 6.29863 6.42065 6.43304 6.50786 6.59740 6.64689 6.77878 6.96589 7.07162 7.47741 7.58455 7.67532 7.85861 8.14639 8.28073 9.23889 9.84417 10.51139 11.41505 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.002595 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.279216 B =10786.296358 C =12248.982965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 H 0.067 0.933 4 C 0.182 3.818 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.141 3.859 15 C -0.114 4.114 16 H 0.081 0.919 17 C 0.134 3.866 18 N -0.717 5.717 19 C 0.590 3.410 20 O -0.536 6.536 21 C -0.235 4.235 22 C -0.033 4.033 23 C 0.023 3.977 24 N -0.558 5.558 25 H 0.419 0.581 26 C 0.057 3.943 27 C -0.171 4.171 28 C -0.188 4.188 29 S 0.172 5.828 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.052 0.948 35 H 0.252 0.748 36 H 0.036 0.964 37 H 0.019 0.981 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.400 0.600 41 H 0.149 0.851 42 H 0.178 0.822 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 0.409 25.834 25.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 H 0.086 0.914 4 C 0.058 3.942 5 N -0.332 5.332 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.567 5.567 10 Si 0.740 3.260 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.014 3.986 15 C -0.134 4.134 16 H 0.100 0.900 17 C 0.011 3.989 18 N -0.367 5.367 19 C 0.376 3.624 20 O -0.415 6.415 21 C -0.355 4.355 22 C -0.070 4.070 23 C -0.091 4.091 24 N -0.159 5.159 25 H 0.257 0.743 26 C -0.077 4.077 27 C -0.201 4.201 28 C -0.310 4.310 29 S 0.435 5.565 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.037 0.963 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.235 0.765 41 H 0.166 0.834 42 H 0.195 0.805 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.870 0.204 24.595 24.611 hybrid contribution 0.732 0.214 0.830 1.127 sum 1.602 0.417 25.425 25.479 Atomic orbital electron populations 1.21693 0.95265 1.01657 1.00577 1.22433 0.95177 0.99106 0.96219 0.91434 1.21241 0.89292 0.93048 0.90652 1.44464 1.32817 1.51551 1.04371 1.19058 1.04153 1.18467 0.94008 0.90457 1.24824 0.98446 0.99931 0.97170 1.69975 1.29822 1.42919 1.13968 0.86131 0.78927 0.81584 0.79353 1.21638 1.21810 1.20633 1.21580 0.92996 0.97096 0.86885 1.22690 0.99539 0.98153 0.93032 0.90026 1.21453 0.98756 0.94273 0.84446 1.45922 1.65290 1.14381 1.11127 1.16816 0.77871 0.86263 0.81490 1.90828 1.52496 1.15147 1.83021 1.23787 1.14500 0.98751 0.98462 1.19207 0.98059 0.99803 0.89892 1.17997 1.09619 0.95038 0.86412 1.41899 1.53676 1.11063 1.09275 0.74304 1.21873 1.02487 0.83125 1.00194 1.20157 1.09278 0.99846 0.90801 1.23237 1.10845 0.97898 0.99032 1.83934 1.63739 1.04150 1.04635 0.93612 0.92766 0.92679 0.94299 0.93018 0.93778 0.94551 0.96301 0.91069 0.91305 0.76489 0.83360 0.80495 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.17 37.16 0.34 -1.75 16 2 C -0.11 -1.99 3.00 -88.78 -0.27 -2.26 16 3 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 4 C 0.18 4.37 5.00 -3.06 -0.02 4.36 16 5 N -0.61 -15.37 3.39 -170.07 -0.58 -15.95 16 6 C -0.23 -6.36 10.26 -15.06 -0.15 -6.52 16 7 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 8 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 9 N -0.92 -26.99 10.36 55.49 0.58 -26.41 16 10 Si 0.91 22.11 29.56 -169.99 -5.02 17.08 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.14 2.85 6.40 -2.53 -0.02 2.83 16 15 C -0.11 -1.92 2.55 -88.47 -0.23 -2.15 16 16 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 17 C 0.13 1.99 5.13 -4.04 -0.02 1.97 16 18 N -0.72 -10.01 5.40 -61.71 -0.33 -10.34 16 19 C 0.59 8.75 7.77 -12.97 -0.10 8.65 16 20 O -0.54 -9.46 16.77 5.16 0.09 -9.37 16 21 C -0.23 -2.99 6.38 -37.18 -0.24 -3.23 16 22 C -0.03 -0.38 9.88 -40.23 -0.40 -0.78 16 23 C 0.02 0.24 7.67 -84.01 -0.64 -0.41 16 24 N -0.56 -3.80 6.21 -10.89 -0.07 -3.87 16 25 H 0.42 1.54 8.96 -40.82 -0.37 1.17 16 26 C 0.06 0.34 11.85 -16.93 -0.20 0.14 16 27 C -0.17 -1.42 10.84 -39.61 -0.43 -1.85 16 28 C -0.19 -2.03 7.31 -38.28 -0.28 -2.31 16 29 S 0.17 1.92 22.29 -107.50 -2.40 -0.48 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.04 1.04 7.64 -51.93 -0.40 0.65 16 34 H 0.05 1.37 6.90 -51.93 -0.36 1.01 16 35 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.02 0.40 8.01 -51.93 -0.42 -0.02 16 38 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.40 5.10 7.40 -40.82 -0.30 4.80 16 41 H 0.15 1.57 8.00 -52.49 -0.42 1.15 16 42 H 0.18 0.34 8.06 -52.48 -0.42 -0.09 16 43 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -34.03 368.03 -10.95 -44.98 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.02 Total: 2.42 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -2.74 Total: -3.61 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.40 Total: -56.58 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.40 Total: -0.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.03 -10.95 -44.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093160602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.892 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds