Wall clock time and date at job start Tue Mar 31 2020 18:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 110.64006 * 2 1 4 4 C 1.54332 * 111.00259 * 236.92147 * 2 1 3 5 5 N 1.47026 * 107.26211 * 219.60031 * 4 2 1 6 6 C 1.36936 * 125.64605 * 178.85096 * 5 4 2 7 7 H 1.08000 * 120.00166 * 174.40973 * 6 5 4 8 8 C 1.38820 * 119.99958 * 354.13039 * 6 5 4 9 9 N 1.31619 * 119.99959 * 7.05077 * 8 6 5 10 10 Si 1.86800 * 119.99940 * 187.04361 * 8 6 5 11 11 H 1.48496 * 109.47026 * 94.98992 * 10 8 6 12 12 H 1.48495 * 109.46947 * 214.98885 * 10 8 6 13 13 H 1.48503 * 109.47295 * 334.99239 * 10 8 6 14 14 C 1.47421 * 108.70366 * 358.58629 * 5 4 2 15 15 C 1.54905 * 104.83372 * 24.35676 * 14 5 4 16 16 H 1.09002 * 111.00827 * 81.06181 * 15 14 5 17 17 C 1.53000 * 111.00771 * 204.87646 * 15 14 5 18 18 N 1.46496 * 109.47118 * 293.54828 * 17 15 14 19 19 C 1.34770 * 120.00437 * 179.97438 * 18 17 15 20 20 O 1.21736 * 119.99707 * 359.97438 * 19 18 17 21 21 C 1.46413 * 120.00795 * 180.02562 * 19 18 17 22 22 C 1.35773 * 124.96369 * 180.02562 * 21 19 18 23 23 C 1.38868 * 115.18513 * 179.97438 * 22 21 19 24 24 N 1.39753 * 139.91174 * 179.97438 * 23 22 21 25 25 H 0.96991 * 125.63404 * 359.97438 * 24 23 22 26 26 C 1.36219 * 108.72930 * 179.97438 * 24 23 22 27 27 C 1.34499 * 109.29878 * 359.97438 * 26 24 23 28 28 C 1.38241 * 113.39341 * 359.97438 * 23 22 21 29 29 S 1.75625 * 124.95183 * 359.69030 * 21 19 18 30 30 H 1.08994 * 109.47008 * 296.85981 * 1 2 3 31 31 H 1.09002 * 109.46873 * 56.86025 * 1 2 3 32 32 H 1.09003 * 109.46912 * 176.85414 * 1 2 3 33 33 H 1.08999 * 109.99368 * 100.12953 * 4 2 1 34 34 H 1.08999 * 109.78130 * 338.95487 * 4 2 1 35 35 H 0.96994 * 119.99988 * 179.97438 * 9 8 6 36 36 H 1.09008 * 110.36516 * 143.19385 * 14 5 4 37 37 H 1.08998 * 110.36626 * 265.40279 * 14 5 4 38 38 H 1.08998 * 109.46767 * 53.54463 * 17 15 14 39 39 H 1.08991 * 109.47523 * 173.54436 * 17 15 14 40 40 H 0.97010 * 120.00185 * 359.97438 * 18 17 15 41 41 H 1.08000 * 122.40779 * 359.93211 * 22 21 19 42 42 H 1.08006 * 125.34608 * 180.02562 * 26 24 23 43 43 H 1.08006 * 126.07736 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0832 -0.7864 -1.2073 5 7 3.2495 -1.5470 -0.7352 6 6 4.0126 -2.3918 -1.4962 7 1 4.9047 -2.8362 -1.0801 8 6 3.6364 -2.6815 -2.8007 9 7 2.6281 -2.0404 -3.3527 10 14 4.5614 -3.9812 -3.7727 11 1 3.8556 -5.2824 -3.6557 12 1 4.6251 -3.5792 -5.2008 13 1 5.9389 -4.1151 -3.2342 14 6 3.4652 -1.2446 0.6914 15 6 2.0790 -0.7933 1.2152 16 1 1.4469 -1.6528 1.4384 17 6 2.2235 0.1105 2.4412 18 7 2.7729 -0.6640 3.5568 19 6 2.9883 -0.0708 4.7476 20 8 2.7267 1.1088 4.8961 21 6 3.5379 -0.8447 5.8624 22 6 3.7936 -0.3508 7.1010 23 6 4.3145 -1.2661 8.0062 24 7 4.7445 -1.3300 9.3344 25 1 4.7477 -0.5918 9.9635 26 6 5.1584 -2.6004 9.5995 27 6 5.0113 -3.3552 8.4960 28 6 4.4795 -2.5312 7.4740 29 16 3.9547 -2.5494 5.7950 30 1 -0.3633 0.4643 0.9168 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3633 -1.0262 -0.0564 33 1 2.3849 -0.0961 -1.9950 34 1 1.3217 -1.4702 -1.5823 35 1 2.3655 -2.2426 -4.2642 36 1 3.7993 -2.1363 1.2219 37 1 4.1944 -0.4422 0.8031 38 1 2.8951 0.9362 2.2067 39 1 1.2462 0.5048 2.7192 40 1 2.9817 -1.6040 3.4384 41 1 3.6061 0.6800 7.3632 42 1 5.5433 -2.9472 10.5471 43 1 5.2565 -4.4031 8.4048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093160602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:34 Heat of formation + Delta-G solvation = 32.635982 kcal Electronic energy + Delta-G solvation = -25281.235312 eV Core-core repulsion = 21646.261130 eV Total energy + Delta-G solvation = -3634.974182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.11486 -40.87523 -39.56094 -36.29312 -35.88982 -34.69373 -32.54290 -31.86675 -31.13266 -29.16973 -27.80377 -26.71672 -25.17494 -24.09476 -22.70756 -21.74979 -21.55807 -21.24841 -20.42824 -19.40656 -18.81673 -17.88002 -17.24344 -16.74717 -16.50481 -16.46757 -15.96921 -15.66450 -15.50321 -15.23720 -14.87518 -14.72346 -14.40040 -14.37712 -14.13049 -13.66453 -13.44084 -13.31512 -13.08899 -12.96267 -12.86687 -12.68514 -12.49679 -12.40794 -11.97606 -11.89366 -11.84299 -11.60027 -11.47034 -11.36431 -11.10232 -10.67256 -10.66789 -10.20756 -9.13481 -8.87916 -8.62562 -7.84682 -5.19125 -0.50436 0.42839 0.97048 1.38029 1.46575 1.48313 1.57218 1.72952 1.90729 2.14886 2.30473 2.50345 3.32760 3.58671 3.66463 3.83844 3.92144 3.95107 3.96946 4.17386 4.23832 4.35951 4.50047 4.57053 4.60166 4.71090 4.75554 4.81554 4.84938 4.96479 4.99091 5.06626 5.09344 5.15418 5.29628 5.37009 5.45255 5.49759 5.56012 5.72018 5.79871 5.83155 6.21623 6.36698 6.62287 7.02873 7.11712 7.79080 8.44309 9.26101 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.002595 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.279216 B =10786.296358 C =12248.982965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 H 0.076 0.924 4 C 0.190 3.810 5 N -0.629 5.629 6 C -0.243 4.243 7 H 0.082 0.918 8 C -0.065 4.065 9 N -0.949 5.949 10 Si 0.977 3.023 11 H -0.286 1.286 12 H -0.296 1.296 13 H -0.268 1.268 14 C 0.137 3.863 15 C -0.093 4.093 16 H 0.089 0.911 17 C 0.145 3.855 18 N -0.713 5.713 19 C 0.592 3.408 20 O -0.571 6.571 21 C -0.268 4.268 22 C -0.021 4.021 23 C -0.005 4.005 24 N -0.546 5.546 25 H 0.435 0.565 26 C 0.091 3.909 27 C -0.202 4.202 28 C -0.197 4.197 29 S 0.165 5.835 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.048 0.952 33 H -0.002 1.002 34 H 0.020 0.980 35 H 0.247 0.753 36 H 0.046 0.954 37 H 0.018 0.982 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.406 0.594 41 H 0.151 0.849 42 H 0.227 0.773 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.864 -0.447 29.245 29.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.094 0.906 4 C 0.065 3.935 5 N -0.355 5.355 6 C -0.372 4.372 7 H 0.100 0.900 8 C -0.259 4.259 9 N -0.598 5.598 10 Si 0.805 3.195 11 H -0.213 1.213 12 H -0.223 1.223 13 H -0.193 1.193 14 C 0.011 3.989 15 C -0.112 4.112 16 H 0.107 0.893 17 C 0.022 3.978 18 N -0.364 5.364 19 C 0.380 3.620 20 O -0.453 6.453 21 C -0.388 4.388 22 C -0.058 4.058 23 C -0.118 4.118 24 N -0.148 5.148 25 H 0.276 0.724 26 C -0.044 4.044 27 C -0.231 4.231 28 C -0.320 4.320 29 S 0.428 5.572 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.016 0.984 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.242 0.758 41 H 0.169 0.831 42 H 0.243 0.757 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.593 -0.642 28.042 28.094 hybrid contribution 0.624 0.439 -0.041 0.764 sum 2.216 -0.203 28.001 28.089 Atomic orbital electron populations 1.21644 0.92866 1.01704 1.02293 1.22311 0.97056 0.98596 0.93967 0.90605 1.21013 0.88305 0.91929 0.92227 1.44796 1.32838 1.51373 1.06457 1.19453 1.04591 1.18548 0.94580 0.90045 1.25668 0.99753 1.02070 0.98366 1.70197 1.31446 1.44278 1.13865 0.85084 0.78269 0.78783 0.77369 1.21263 1.22281 1.19254 1.21744 0.95074 0.97462 0.84579 1.22489 0.97155 0.98418 0.93185 0.89306 1.21257 0.99384 0.93454 0.83750 1.45831 1.65126 1.14598 1.10802 1.17041 0.77154 0.85926 0.81870 1.90796 1.54265 1.16585 1.83664 1.23535 1.17298 0.99588 0.98405 1.19344 0.96536 1.00101 0.89798 1.17974 1.11202 0.94610 0.88013 1.42032 1.52386 1.12177 1.08199 0.72390 1.22682 0.98792 0.81858 1.01040 1.20568 1.10593 1.00987 0.90922 1.23620 1.10614 0.98900 0.98884 1.83792 1.64295 1.03212 1.05856 0.90482 0.92609 0.93319 0.98393 0.96167 0.94421 0.93555 0.96459 0.91796 0.89981 0.75775 0.83114 0.75674 0.81995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.17 71.98 0.66 -3.17 16 2 C -0.10 -3.60 3.00 -9.60 -0.03 -3.63 16 3 H 0.08 2.63 8.04 -2.39 -0.02 2.61 16 4 C 0.19 9.48 5.00 86.73 0.43 9.91 16 5 N -0.63 -32.68 3.39 -691.97 -2.35 -35.02 16 6 C -0.24 -13.78 10.26 84.04 0.86 -12.92 16 7 H 0.08 4.42 7.84 -2.91 -0.02 4.40 16 8 C -0.07 -3.78 5.48 84.86 0.47 -3.31 16 9 N -0.95 -57.83 10.36 21.65 0.22 -57.60 16 10 Si 0.98 46.24 29.56 68.60 2.03 48.27 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 C 0.14 5.53 6.40 86.85 0.56 6.09 16 15 C -0.09 -3.05 2.55 -9.40 -0.02 -3.07 16 16 H 0.09 2.84 8.05 -2.39 -0.02 2.82 16 17 C 0.15 4.15 5.13 86.38 0.44 4.59 16 18 N -0.71 -19.52 5.40 -467.34 -2.52 -22.05 16 19 C 0.59 17.54 7.77 86.37 0.67 18.21 16 20 O -0.57 -20.21 16.77 -4.46 -0.07 -20.28 16 21 C -0.27 -6.82 6.38 23.83 0.15 -6.67 16 22 C -0.02 -0.48 9.88 21.85 0.22 -0.26 16 23 C 0.00 -0.09 7.67 38.03 0.29 0.20 16 24 N -0.55 -5.62 6.21 -188.38 -1.17 -6.79 16 25 H 0.44 1.64 8.96 -92.72 -0.83 0.81 16 26 C 0.09 0.69 11.85 83.16 0.99 1.67 16 27 C -0.20 -2.76 10.84 22.25 0.24 -2.52 16 28 C -0.20 -3.96 7.31 23.11 0.17 -3.79 16 29 S 0.17 3.63 22.29 -56.49 -1.26 2.37 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.52 8.08 -2.39 -0.02 1.50 16 33 H 0.00 -0.12 7.64 -2.39 -0.02 -0.14 16 34 H 0.02 1.12 6.90 -2.39 -0.02 1.10 16 35 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.05 1.77 8.14 -2.38 -0.02 1.76 16 37 H 0.02 0.72 8.01 -2.39 -0.02 0.70 16 38 H 0.06 1.96 8.10 -2.39 -0.02 1.94 16 39 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.41 10.15 7.40 -92.70 -0.69 9.46 16 41 H 0.15 3.16 8.00 -2.91 -0.02 3.13 16 42 H 0.23 -0.57 8.06 -2.91 -0.02 -0.59 16 43 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -76.95 368.03 0.50 -76.45 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -0.47 Total: 13.33 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 6.09 Total: 1.33 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -5.82 Total: -121.47 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.07 Total: -20.28 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.26 Total: 2.37 kcal Total: -76.95 0.50 -76.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093160602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.082 kcal (2) G-P(sol) polarization free energy of solvation -76.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds