Wall clock time and date at job start Tue Mar 31 2020 18:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.91666 * 2 1 4 4 C 1.54907 * 111.00654 * 236.09376 * 2 1 3 5 5 N 1.47417 * 104.83064 * 204.92020 * 4 2 1 6 6 C 1.34783 * 125.64784 * 204.09368 * 5 4 2 7 7 O 1.21718 * 120.00318 * 174.48017 * 6 5 4 8 8 C 1.46500 * 119.99724 * 354.48182 * 6 5 4 9 9 C 1.36111 * 125.71029 * 173.12219 * 8 6 5 10 10 C 1.42224 * 107.62454 * 179.97438 * 9 8 6 11 11 C 1.45598 * 140.77840 * 180.02562 * 10 9 8 12 12 C 1.31814 * 114.63026 * 179.97438 * 11 10 9 13 13 S 1.75351 * 111.24845 * 0.02562 * 12 11 10 14 14 C 1.38180 * 106.99585 * 359.97438 * 10 9 8 15 15 N 1.37456 * 108.16718 * 359.75923 * 14 10 9 16 16 H 0.97002 * 125.68352 * 180.28372 * 15 14 10 17 17 C 1.47019 * 108.70944 * 24.12741 * 5 4 2 18 18 C 1.54331 * 107.26659 * 358.94297 * 17 5 4 19 19 H 1.08998 * 110.71798 * 96.34807 * 18 17 5 20 20 C 1.53001 * 110.71483 * 219.44246 * 18 17 5 21 21 N 1.46502 * 109.47472 * 293.54327 * 20 18 17 22 22 C 1.36931 * 120.00031 * 180.28042 * 21 20 18 23 23 H 1.08000 * 120.00440 * 359.72001 * 22 21 20 24 24 C 1.38810 * 119.99899 * 179.72841 * 22 21 20 25 25 N 1.31619 * 120.00073 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 120.00113 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47087 * 59.99535 * 26 24 22 28 28 H 1.48498 * 109.46980 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.46719 * 299.99971 * 26 24 22 30 30 H 1.09000 * 109.47704 * 296.10586 * 1 2 3 31 31 H 1.09005 * 109.47351 * 56.10240 * 1 2 3 32 32 H 1.09003 * 109.47248 * 176.10192 * 1 2 3 33 33 H 1.09000 * 110.36638 * 86.07817 * 4 2 1 34 34 H 1.08997 * 110.45756 * 323.80678 * 4 2 1 35 35 H 1.07996 * 126.18658 * 359.97367 * 9 8 6 36 36 H 1.07993 * 122.68096 * 359.97438 * 11 10 9 37 37 H 1.08001 * 124.37526 * 180.02562 * 12 11 10 38 38 H 1.08996 * 109.88556 * 239.52629 * 17 5 4 39 39 H 1.08996 * 110.01623 * 118.42990 * 17 5 4 40 40 H 1.09005 * 109.46821 * 173.54996 * 20 18 17 41 41 H 1.09000 * 109.47526 * 53.54777 * 20 18 17 42 42 H 0.96996 * 119.99800 * 0.02562 * 21 20 18 43 43 H 0.97006 * 120.00035 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4270 -1.2431 -0.7731 6 6 4.4477 -1.5617 -1.5937 7 8 5.5450 -1.8134 -1.1310 8 6 4.2363 -1.6050 -3.0428 9 6 5.2055 -1.7813 -3.9821 10 6 4.5774 -1.7608 -5.2580 11 6 4.8962 -1.8743 -6.6741 12 6 3.8582 -1.7758 -7.4805 13 16 2.3741 -1.5316 -6.5790 14 6 3.2263 -1.5698 -5.0400 15 7 3.0193 -1.4806 -3.6841 16 1 2.1618 -1.3499 -3.2500 17 6 3.4674 -1.2741 0.6962 18 6 2.0860 -0.8079 1.2023 19 1 1.4477 -1.6632 1.4240 20 6 2.2349 0.0877 2.4339 21 7 2.7613 -0.7010 3.5506 22 6 2.9736 -0.1090 4.7669 23 1 2.7573 0.9405 4.9018 24 6 3.4671 -0.8576 5.8265 25 7 3.7305 -2.1367 5.6623 26 14 3.7574 -0.0498 7.4857 27 1 2.4770 0.4992 7.9998 28 1 4.2829 -1.0574 8.4416 29 1 4.7427 1.0510 7.3345 30 1 -0.3634 0.4522 0.9228 31 1 -0.3634 0.5732 -0.8530 32 1 -0.3634 -1.0253 -0.0699 33 1 2.1560 -0.1721 -2.0836 34 1 1.4525 -1.6704 -1.4042 35 1 6.2605 -1.9130 -3.7928 36 1 5.9026 -2.0269 -7.0348 37 1 3.9145 -1.8377 -8.5572 38 1 4.2425 -0.5997 1.0601 39 1 3.6661 -2.2883 1.0426 40 1 1.2617 0.4970 2.7052 41 1 2.9222 0.9033 2.2092 42 1 2.9560 -1.6435 3.4294 43 1 4.0750 -2.6600 6.4029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106500318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:57 Heat of formation + Delta-G solvation = 56.539724 kcal Electronic energy + Delta-G solvation = -25619.172516 eV Core-core repulsion = 21985.234878 eV Total energy + Delta-G solvation = -3633.937638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.67588 -39.83351 -37.91847 -35.68753 -34.72733 -33.02883 -31.52568 -30.76493 -29.72909 -28.40272 -26.72928 -25.61955 -23.71763 -23.17956 -22.25162 -21.20115 -20.38604 -19.99856 -19.53944 -18.59356 -17.22100 -16.72106 -16.40590 -15.65289 -15.36970 -15.01843 -14.84882 -14.67824 -14.35008 -14.13327 -13.83022 -13.59346 -13.31863 -13.17749 -12.99858 -12.87859 -12.54306 -12.22911 -12.18546 -12.06040 -11.89828 -11.52094 -11.14775 -11.13329 -10.91304 -10.70257 -10.53868 -10.49899 -10.17848 -10.05438 -9.77245 -9.69333 -8.89764 -8.76433 -8.56379 -7.95036 -6.95735 -5.77598 -3.07300 0.76515 1.03424 1.15836 1.67255 2.61738 2.70317 2.92374 3.25063 3.43884 3.48250 3.49461 4.15115 4.25685 4.48575 4.50197 4.65362 4.68079 4.78583 4.98042 5.07524 5.14528 5.29829 5.34969 5.37917 5.46085 5.52535 5.58695 5.66520 5.80871 5.82321 5.91952 5.93533 6.04871 6.08058 6.13701 6.24401 6.30534 6.33721 6.45131 6.62844 6.76188 6.84936 7.35860 7.67798 8.00360 8.40468 9.51831 10.07619 10.41999 11.44952 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025543 B = 0.002320 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.938563 B =12066.644969 C =12936.580730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 H 0.091 0.909 4 C 0.088 3.912 5 N -0.616 5.616 6 C 0.598 3.402 7 O -0.516 6.516 8 C 0.001 3.999 9 C -0.071 4.071 10 C -0.163 4.163 11 C -0.068 4.068 12 C -0.223 4.223 13 S 0.129 5.871 14 C -0.014 4.014 15 N -0.528 5.528 16 H 0.422 0.578 17 C 0.117 3.883 18 C -0.100 4.100 19 H 0.088 0.912 20 C 0.165 3.835 21 N -0.732 5.732 22 C -0.243 4.243 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.158 0.842 36 H 0.145 0.855 37 H 0.170 0.830 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.025 0.975 41 H 0.022 0.978 42 H 0.384 0.616 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.945 1.777 -27.983 28.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 H 0.109 0.891 4 C -0.035 4.035 5 N -0.349 5.349 6 C 0.386 3.614 7 O -0.392 6.392 8 C -0.112 4.112 9 C -0.098 4.098 10 C -0.175 4.175 11 C -0.098 4.098 12 C -0.357 4.357 13 S 0.382 5.618 14 C -0.243 4.243 15 N -0.136 5.136 16 H 0.265 0.735 17 C -0.005 4.005 18 C -0.119 4.119 19 H 0.106 0.894 20 C 0.037 3.963 21 N -0.377 5.377 22 C -0.374 4.374 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.739 3.261 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.212 1.212 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.176 0.824 36 H 0.163 0.837 37 H 0.188 0.812 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.043 0.957 41 H 0.039 0.961 42 H 0.218 0.782 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.833 1.916 -27.903 28.792 hybrid contribution 1.204 -0.051 1.454 1.889 sum -5.629 1.864 -26.450 27.106 Atomic orbital electron populations 1.21723 0.93382 1.02204 1.02577 1.22345 0.96363 0.99581 0.93153 0.89118 1.22653 0.84126 0.98206 0.98556 1.48447 1.11600 1.66662 1.08236 1.16595 0.83655 0.77831 0.83320 1.90910 1.23061 1.49630 1.75586 1.20060 0.84653 1.14178 0.92329 1.20744 0.99101 1.01784 0.88211 1.19397 0.91593 1.12721 0.93802 1.20348 0.99906 1.00027 0.89560 1.24857 0.94922 1.12654 1.03256 1.83900 1.08260 1.79562 0.90102 1.23622 0.99122 1.12052 0.89472 1.42158 1.09256 1.59440 1.02783 0.73474 1.22122 0.98706 1.02910 0.76712 1.22546 0.94952 0.99294 0.95094 0.89388 1.20630 0.96781 0.92878 0.86008 1.42336 1.77934 1.09974 1.07428 1.19147 1.36441 0.94094 0.87720 0.91224 1.24753 1.01961 0.95811 0.98309 1.69646 1.50676 1.06009 1.31675 0.86261 0.77897 0.78085 0.83880 1.21284 1.21667 1.21220 0.91176 0.92588 0.92295 0.91076 0.91057 0.82447 0.83698 0.81250 0.90045 0.90691 0.95734 0.96064 0.78215 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.31 37.16 0.35 -0.89 16 2 C -0.09 -1.02 3.09 -88.47 -0.27 -1.30 16 3 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 4 C 0.09 0.88 4.69 -2.53 -0.01 0.87 16 5 N -0.62 -8.61 3.33 -172.13 -0.57 -9.18 16 6 C 0.60 9.29 7.80 -12.93 -0.10 9.19 16 7 O -0.52 -9.98 17.19 5.17 0.09 -9.89 16 8 C 0.00 0.01 6.74 -82.47 -0.56 -0.55 16 9 C -0.07 -0.88 10.59 -38.82 -0.41 -1.29 16 10 C -0.16 -1.81 6.80 -105.45 -0.72 -2.52 16 11 C -0.07 -0.58 10.42 -38.54 -0.40 -0.98 16 12 C -0.22 -1.58 11.03 28.84 0.32 -1.26 16 13 S 0.13 1.00 23.24 -107.50 -2.50 -1.50 16 14 C -0.01 -0.14 8.41 -15.05 -0.13 -0.27 16 15 N -0.53 -5.50 5.43 -7.94 -0.04 -5.54 16 16 H 0.42 3.45 5.30 -40.82 -0.22 3.23 16 17 C 0.12 1.91 6.16 -3.06 -0.02 1.89 16 18 C -0.10 -1.46 2.48 -88.78 -0.22 -1.69 16 19 H 0.09 1.31 8.04 -51.93 -0.42 0.89 16 20 C 0.16 3.11 5.58 -4.04 -0.02 3.09 16 21 N -0.73 -18.06 5.45 -59.91 -0.33 -18.39 16 22 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 26 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.07 0.60 6.22 -51.93 -0.32 0.27 16 34 H 0.07 0.60 7.65 -51.93 -0.40 0.20 16 35 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.08 1.53 7.76 -51.93 -0.40 1.13 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 42 H 0.38 10.00 7.52 -40.82 -0.31 9.70 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -33.56 366.73 -10.39 -43.95 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.83 Total: 8.14 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.44 Total: -3.04 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.22 Total: -60.61 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.50 Total: -1.50 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.56 -10.39 -43.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106500318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.491 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds