Wall clock time and date at job start Tue Mar 31 2020 18:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.91666 * 2 1 4 4 C 1.54907 * 111.00654 * 236.09376 * 2 1 3 5 5 N 1.47417 * 104.83064 * 204.92020 * 4 2 1 6 6 C 1.34783 * 125.64784 * 204.09368 * 5 4 2 7 7 O 1.21718 * 120.00318 * 174.48017 * 6 5 4 8 8 C 1.46500 * 119.99724 * 354.48182 * 6 5 4 9 9 C 1.36111 * 125.71029 * 173.12219 * 8 6 5 10 10 C 1.42224 * 107.62454 * 179.97438 * 9 8 6 11 11 C 1.45598 * 140.77840 * 180.02562 * 10 9 8 12 12 C 1.31814 * 114.63026 * 179.97438 * 11 10 9 13 13 S 1.75351 * 111.24845 * 0.02562 * 12 11 10 14 14 C 1.38180 * 106.99585 * 359.97438 * 10 9 8 15 15 N 1.37456 * 108.16718 * 359.75923 * 14 10 9 16 16 H 0.97002 * 125.68352 * 180.28372 * 15 14 10 17 17 C 1.47019 * 108.70944 * 24.12741 * 5 4 2 18 18 C 1.54331 * 107.26659 * 358.94297 * 17 5 4 19 19 H 1.08998 * 110.71798 * 96.34807 * 18 17 5 20 20 C 1.53001 * 110.71483 * 219.44246 * 18 17 5 21 21 N 1.46502 * 109.47472 * 293.54327 * 20 18 17 22 22 C 1.36931 * 120.00031 * 180.28042 * 21 20 18 23 23 H 1.08000 * 120.00440 * 359.72001 * 22 21 20 24 24 C 1.38810 * 119.99899 * 179.72841 * 22 21 20 25 25 N 1.31619 * 120.00073 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 120.00113 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47087 * 59.99535 * 26 24 22 28 28 H 1.48498 * 109.46980 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.46719 * 299.99971 * 26 24 22 30 30 H 1.09000 * 109.47704 * 296.10586 * 1 2 3 31 31 H 1.09005 * 109.47351 * 56.10240 * 1 2 3 32 32 H 1.09003 * 109.47248 * 176.10192 * 1 2 3 33 33 H 1.09000 * 110.36638 * 86.07817 * 4 2 1 34 34 H 1.08997 * 110.45756 * 323.80678 * 4 2 1 35 35 H 1.07996 * 126.18658 * 359.97367 * 9 8 6 36 36 H 1.07993 * 122.68096 * 359.97438 * 11 10 9 37 37 H 1.08001 * 124.37526 * 180.02562 * 12 11 10 38 38 H 1.08996 * 109.88556 * 239.52629 * 17 5 4 39 39 H 1.08996 * 110.01623 * 118.42990 * 17 5 4 40 40 H 1.09005 * 109.46821 * 173.54996 * 20 18 17 41 41 H 1.09000 * 109.47526 * 53.54777 * 20 18 17 42 42 H 0.96996 * 119.99800 * 0.02562 * 21 20 18 43 43 H 0.97006 * 120.00035 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4270 -1.2431 -0.7731 6 6 4.4477 -1.5617 -1.5937 7 8 5.5450 -1.8134 -1.1310 8 6 4.2363 -1.6050 -3.0428 9 6 5.2055 -1.7813 -3.9821 10 6 4.5774 -1.7608 -5.2580 11 6 4.8962 -1.8743 -6.6741 12 6 3.8582 -1.7758 -7.4805 13 16 2.3741 -1.5316 -6.5790 14 6 3.2263 -1.5698 -5.0400 15 7 3.0193 -1.4806 -3.6841 16 1 2.1618 -1.3499 -3.2500 17 6 3.4674 -1.2741 0.6962 18 6 2.0860 -0.8079 1.2023 19 1 1.4477 -1.6632 1.4240 20 6 2.2349 0.0877 2.4339 21 7 2.7613 -0.7010 3.5506 22 6 2.9736 -0.1090 4.7669 23 1 2.7573 0.9405 4.9018 24 6 3.4671 -0.8576 5.8265 25 7 3.7305 -2.1367 5.6623 26 14 3.7574 -0.0498 7.4857 27 1 2.4770 0.4992 7.9998 28 1 4.2829 -1.0574 8.4416 29 1 4.7427 1.0510 7.3345 30 1 -0.3634 0.4522 0.9228 31 1 -0.3634 0.5732 -0.8530 32 1 -0.3634 -1.0253 -0.0699 33 1 2.1560 -0.1721 -2.0836 34 1 1.4525 -1.6704 -1.4042 35 1 6.2605 -1.9130 -3.7928 36 1 5.9026 -2.0269 -7.0348 37 1 3.9145 -1.8377 -8.5572 38 1 4.2425 -0.5997 1.0601 39 1 3.6661 -2.2883 1.0426 40 1 1.2617 0.4970 2.7052 41 1 2.9222 0.9033 2.2092 42 1 2.9560 -1.6435 3.4294 43 1 4.0750 -2.6600 6.4029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106500318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:56 Heat of formation + Delta-G solvation = 34.877701 kcal Electronic energy + Delta-G solvation = -25620.111852 eV Core-core repulsion = 21985.234878 eV Total energy + Delta-G solvation = -3634.876974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.58355 -40.92600 -39.16266 -36.64379 -36.25004 -34.34672 -33.13412 -31.66977 -31.11310 -29.49050 -27.60464 -27.15815 -25.24536 -24.11879 -23.41625 -22.28749 -21.34924 -21.19737 -20.34318 -19.58252 -19.09735 -17.76857 -17.62513 -16.76069 -16.69435 -16.10004 -15.94599 -15.52351 -15.49452 -15.36126 -15.18739 -15.06730 -14.59916 -14.32815 -14.13722 -13.85269 -13.62315 -13.42483 -13.35556 -12.97167 -12.82436 -12.74606 -12.63685 -12.53239 -12.22353 -11.99685 -11.93934 -11.76533 -11.65788 -11.45171 -11.42269 -10.95100 -10.61153 -9.95967 -9.31098 -9.02387 -8.65535 -7.96516 -5.25803 0.06203 0.12097 0.41222 1.06369 1.45681 1.49097 1.55134 1.60674 1.74342 2.08456 2.23511 2.54436 3.17726 3.30146 3.37163 3.52876 3.68575 3.77459 3.98620 4.04127 4.10536 4.16144 4.33599 4.39593 4.45264 4.51792 4.61473 4.68266 4.75541 4.75920 4.80481 4.90318 5.00205 5.10380 5.15564 5.17847 5.23458 5.31269 5.41071 5.45718 5.48704 5.61258 6.08162 6.23645 6.25150 6.80466 7.31592 8.06879 8.28987 9.26770 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025543 B = 0.002320 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.938563 B =12066.644969 C =12936.580730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 H 0.091 0.909 4 C 0.086 3.914 5 N -0.613 5.613 6 C 0.594 3.406 7 O -0.570 6.570 8 C -0.016 4.016 9 C -0.081 4.081 10 C -0.182 4.182 11 C -0.088 4.088 12 C -0.211 4.211 13 S 0.167 5.833 14 C -0.022 4.022 15 N -0.519 5.519 16 H 0.431 0.569 17 C 0.123 3.877 18 C -0.089 4.089 19 H 0.091 0.909 20 C 0.165 3.835 21 N -0.746 5.746 22 C -0.246 4.246 23 H 0.077 0.923 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.974 3.026 27 H -0.274 1.274 28 H -0.297 1.297 29 H -0.280 1.280 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.153 0.847 36 H 0.163 0.837 37 H 0.203 0.797 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.016 0.984 42 H 0.373 0.627 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.369 2.966 -30.940 32.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 H 0.109 0.891 4 C -0.035 4.035 5 N -0.346 5.346 6 C 0.385 3.615 7 O -0.450 6.450 8 C -0.129 4.129 9 C -0.109 4.109 10 C -0.194 4.194 11 C -0.118 4.118 12 C -0.344 4.344 13 S 0.420 5.580 14 C -0.251 4.251 15 N -0.128 5.128 16 H 0.277 0.723 17 C 0.000 4.000 18 C -0.108 4.108 19 H 0.109 0.891 20 C 0.038 3.962 21 N -0.389 5.389 22 C -0.378 4.378 23 H 0.095 0.905 24 C -0.269 4.269 25 N -0.621 5.621 26 Si 0.803 3.197 27 H -0.200 1.200 28 H -0.223 1.223 29 H -0.206 1.206 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.171 0.829 36 H 0.180 0.820 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.034 0.966 42 H 0.205 0.795 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.334 3.161 -30.899 32.432 hybrid contribution 1.929 -0.384 2.190 2.943 sum -7.405 2.776 -28.709 29.778 Atomic orbital electron populations 1.21721 0.90995 1.03304 1.03415 1.22330 0.98123 0.98869 0.90907 0.89090 1.22949 0.82035 0.99579 0.98969 1.48458 1.13047 1.66070 1.06980 1.16994 0.83111 0.76944 0.84498 1.90866 1.25191 1.52173 1.76741 1.19570 0.86116 1.16481 0.90726 1.20898 0.99134 1.01572 0.89297 1.19714 0.92019 1.13156 0.94533 1.20538 1.01464 1.01414 0.88348 1.25335 0.94121 1.10209 1.04754 1.83872 1.07755 1.78616 0.87739 1.24116 0.99816 1.11063 0.90107 1.41970 1.08745 1.59234 1.02852 0.72289 1.21843 0.98907 1.00655 0.78610 1.22389 0.94109 0.99320 0.94966 0.89098 1.20780 0.96498 0.92928 0.85985 1.42572 1.78180 1.09922 1.08225 1.19593 1.34896 0.94460 0.88819 0.90477 1.25603 1.02811 0.96455 1.02078 1.69815 1.52414 1.07470 1.32366 0.85203 0.78115 0.76969 0.79421 1.19978 1.22289 1.20600 0.92084 0.89727 0.91409 0.88630 0.88381 0.82940 0.81993 0.77993 0.93382 0.93124 0.94472 0.96561 0.79515 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.31 71.98 0.67 -1.25 16 2 C -0.08 -1.62 3.09 -9.40 -0.03 -1.65 16 3 H 0.09 1.82 8.05 -2.39 -0.02 1.80 16 4 C 0.09 1.55 4.69 86.86 0.41 1.95 16 5 N -0.61 -17.49 3.33 -816.70 -2.72 -20.21 16 6 C 0.59 19.36 7.80 86.39 0.67 20.03 16 7 O -0.57 -23.81 17.19 -4.40 -0.08 -23.88 16 8 C -0.02 -0.41 6.74 39.81 0.27 -0.14 16 9 C -0.08 -2.05 10.59 22.77 0.24 -1.81 16 10 C -0.18 -3.82 6.80 -20.40 -0.14 -3.96 16 11 C -0.09 -1.28 10.42 23.39 0.24 -1.04 16 12 C -0.21 -2.21 11.03 67.04 0.74 -1.47 16 13 S 0.17 2.00 23.24 -56.49 -1.31 0.69 16 14 C -0.02 -0.41 8.41 83.80 0.70 0.30 16 15 N -0.52 -9.92 5.43 -179.03 -0.97 -10.89 16 16 H 0.43 5.88 5.30 -92.71 -0.49 5.39 16 17 C 0.12 4.24 6.16 86.73 0.53 4.77 16 18 C -0.09 -2.61 2.48 -9.60 -0.02 -2.63 16 19 H 0.09 2.67 8.04 -2.39 -0.02 2.65 16 20 C 0.16 6.26 5.58 86.38 0.48 6.74 16 21 N -0.75 -37.85 5.45 -343.45 -1.87 -39.72 16 22 C -0.25 -13.83 9.99 84.03 0.84 -12.99 16 23 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 24 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 25 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 26 Si 0.97 46.80 29.55 68.60 2.03 48.83 16 27 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 29 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.07 0.86 8.08 -2.39 -0.02 0.85 16 33 H 0.10 1.31 6.22 -2.39 -0.01 1.29 16 34 H 0.10 1.31 7.65 -2.39 -0.02 1.29 16 35 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 36 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.20 0.74 8.06 -2.91 -0.02 0.72 16 38 H 0.05 1.96 7.76 -2.39 -0.02 1.94 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 40 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.02 0.65 8.06 -2.39 -0.02 0.63 16 42 H 0.37 20.32 7.52 -92.71 -0.70 19.63 16 43 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -76.57 366.73 1.30 -75.26 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.14 Total: 27.44 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 6.08 Total: 2.81 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -5.28 Total: -131.15 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.08 Total: -23.88 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.31 Total: 0.69 kcal Total: -76.57 1.30 -75.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106500318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.141 kcal (2) G-P(sol) polarization free energy of solvation -76.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds