Wall clock time and date at job start Tue Mar 31 2020 18:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.29067 * 2 1 4 4 C 1.53998 * 110.32815 * 237.86328 * 2 1 3 5 5 N 1.47483 * 107.08494 * 242.31094 * 4 2 1 6 6 C 1.34775 * 127.03177 * 154.51659 * 5 4 2 7 7 O 1.21739 * 119.99815 * 185.62392 * 6 5 4 8 8 C 1.46454 * 120.00366 * 5.62681 * 6 5 4 9 9 C 1.37461 * 125.80679 * 186.71583 * 8 6 5 10 10 C 1.40660 * 107.55877 * 180.02562 * 9 8 6 11 11 S 1.76019 * 142.39898 * 180.02562 * 10 9 8 12 12 C 1.75590 * 91.31062 * 179.97438 * 11 10 9 13 13 C 1.32771 * 110.47478 * 0.02562 * 12 11 10 14 14 C 1.38246 * 108.02774 * 0.02562 * 10 9 8 15 15 N 1.37918 * 125.80384 * 6.75977 * 8 6 5 16 16 H 0.96999 * 125.68514 * 359.97438 * 15 8 6 17 17 C 1.48113 * 105.93283 * 334.77731 * 5 4 2 18 18 C 1.54598 * 103.42324 * 39.02492 * 17 5 4 19 19 H 1.08997 * 110.57681 * 81.16340 * 18 17 5 20 20 C 1.53001 * 110.99208 * 204.37472 * 18 17 5 21 21 N 1.46498 * 109.46630 * 288.65229 * 20 18 17 22 22 C 1.36938 * 119.99675 * 179.97438 * 21 20 18 23 23 H 1.08006 * 119.99920 * 359.97438 * 22 21 20 24 24 C 1.38812 * 120.00236 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99627 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00364 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47203 * 89.99580 * 26 24 22 28 28 H 1.48501 * 109.47299 * 210.00252 * 26 24 22 29 29 H 1.48502 * 109.47047 * 329.99814 * 26 24 22 30 30 H 1.09003 * 109.47232 * 180.68147 * 1 2 3 31 31 H 1.08998 * 109.47507 * 300.68355 * 1 2 3 32 32 H 1.09006 * 109.47167 * 60.68051 * 1 2 3 33 33 H 1.09008 * 109.91242 * 122.94987 * 4 2 1 34 34 H 1.08998 * 109.91699 * 1.67486 * 4 2 1 35 35 H 1.08000 * 126.22436 * 0.02562 * 9 8 6 36 36 H 1.07995 * 124.76267 * 179.97438 * 12 11 10 37 37 H 1.08001 * 122.16574 * 180.02562 * 13 12 11 38 38 H 1.09002 * 110.66239 * 157.50794 * 17 5 4 39 39 H 1.09002 * 110.66107 * 280.62485 * 17 5 4 40 40 H 1.09000 * 109.47060 * 48.64862 * 20 18 17 41 41 H 1.08995 * 109.47008 * 168.64843 * 20 18 17 42 42 H 0.96990 * 120.00574 * 359.97438 * 21 20 18 43 43 H 0.97000 * 119.99428 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0649 -0.7682 -1.2228 5 7 2.8297 -1.9203 -0.7101 6 6 3.0645 -3.0859 -1.3447 7 8 3.6277 -3.9939 -0.7613 8 6 2.6421 -3.2602 -2.7361 9 6 2.7019 -4.4309 -3.4541 10 6 2.2019 -4.1651 -4.7417 11 16 1.8756 -4.9252 -6.2954 12 6 1.2674 -3.4146 -6.9522 13 6 1.3278 -2.4532 -6.0385 14 6 1.8425 -2.8312 -4.7941 15 7 2.1174 -2.2775 -3.5492 16 1 1.9658 -1.3538 -3.2948 17 6 3.2816 -1.5368 0.6473 18 6 2.0693 -0.7720 1.2264 19 1 1.3209 -1.4691 1.6031 20 6 2.5071 0.1968 2.3267 21 7 2.9001 -0.5617 3.5169 22 6 3.3317 0.0973 4.6370 23 1 3.3828 1.1762 4.6428 24 6 3.7036 -0.6212 5.7650 25 7 3.6408 -1.9359 5.7580 26 14 4.2930 0.2777 7.2927 27 1 3.1327 0.5763 8.1700 28 1 5.2617 -0.5759 8.0264 29 1 4.9534 1.5473 6.8961 30 1 -0.3634 -1.0276 0.0122 31 1 -0.3634 0.5244 0.8838 32 1 -0.3634 0.5033 -0.8961 33 1 2.7166 -0.1221 -1.8111 34 1 1.2334 -1.1173 -1.8349 35 1 3.0665 -5.3819 -3.0949 36 1 0.8969 -3.2855 -7.9584 37 1 1.0000 -1.4446 -6.2427 38 1 3.4980 -2.4222 1.2450 39 1 4.1541 -0.8857 0.5925 40 1 3.3539 0.7866 1.9758 41 1 1.6799 0.8613 2.5760 42 1 2.8545 -1.5305 3.5116 43 1 3.9003 -2.4379 6.5464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106833899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:18 Heat of formation + Delta-G solvation = 56.526924 kcal Electronic energy + Delta-G solvation = -25673.130824 eV Core-core repulsion = 22039.192630 eV Total energy + Delta-G solvation = -3633.938193 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68566 -39.86757 -37.94753 -35.60654 -34.73336 -32.98787 -31.58857 -31.18233 -29.56630 -28.34403 -26.69598 -25.60585 -23.81439 -23.21837 -22.08876 -21.32005 -20.78144 -20.03441 -19.45540 -18.31082 -17.09395 -16.68352 -16.19317 -15.73112 -15.70181 -15.08842 -14.62759 -14.54412 -14.31737 -14.19769 -13.80413 -13.63742 -13.41058 -13.24165 -13.01386 -12.96653 -12.47185 -12.23437 -12.13258 -12.03144 -11.82540 -11.41383 -11.19336 -11.11940 -10.89679 -10.67124 -10.56741 -10.45729 -10.18152 -10.03411 -10.01005 -9.69905 -8.91300 -8.82534 -8.35106 -7.94452 -6.95324 -5.77242 -3.07184 0.48454 1.25507 1.71336 1.78888 2.45861 2.50550 2.86640 3.18556 3.42989 3.47769 3.50075 4.23946 4.32636 4.43645 4.53971 4.66256 4.67588 4.74135 5.01822 5.06398 5.10397 5.21286 5.38427 5.39885 5.45312 5.54033 5.59539 5.66010 5.67053 5.69534 5.84594 5.92136 6.03157 6.08108 6.08937 6.19070 6.31012 6.33770 6.43786 6.64615 6.76478 6.98826 7.38171 7.67958 7.98663 8.40693 9.51985 10.08382 10.42553 11.45251 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027481 B = 0.002270 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.626726 B =12332.380664 C =13104.531503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.091 0.909 4 C 0.091 3.909 5 N -0.620 5.620 6 C 0.601 3.399 7 O -0.516 6.516 8 C 0.018 3.982 9 C -0.074 4.074 10 C -0.217 4.217 11 S 0.130 5.870 12 C -0.190 4.190 13 C -0.114 4.114 14 C 0.059 3.941 15 N -0.544 5.544 16 H 0.420 0.580 17 C 0.115 3.885 18 C -0.102 4.102 19 H 0.086 0.914 20 C 0.166 3.834 21 N -0.733 5.733 22 C -0.243 4.243 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.930 5.930 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.158 0.842 36 H 0.172 0.828 37 H 0.140 0.860 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.385 0.615 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.366 0.822 -27.846 28.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.110 0.890 4 C -0.033 4.033 5 N -0.353 5.353 6 C 0.390 3.610 7 O -0.391 6.391 8 C -0.097 4.097 9 C -0.105 4.105 10 C -0.338 4.338 11 S 0.390 5.610 12 C -0.326 4.326 13 C -0.147 4.147 14 C -0.060 4.060 15 N -0.151 5.151 16 H 0.263 0.737 17 C -0.006 4.006 18 C -0.122 4.122 19 H 0.104 0.896 20 C 0.038 3.962 21 N -0.377 5.377 22 C -0.374 4.374 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.175 0.825 36 H 0.190 0.810 37 H 0.158 0.842 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.039 0.961 41 H 0.042 0.958 42 H 0.218 0.782 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.814 -0.902 -27.961 28.793 hybrid contribution -0.009 2.159 1.493 2.625 sum -6.823 1.257 -26.467 27.362 Atomic orbital electron populations 1.21855 0.93914 1.02159 1.02131 1.22071 0.96503 0.99758 0.93336 0.89039 1.22448 0.95013 0.87982 0.97820 1.48757 1.53475 1.14240 1.18869 1.16536 0.79522 0.81350 0.83628 1.90921 1.42643 1.39551 1.66002 1.20337 1.08141 0.89188 0.92033 1.20422 1.02689 0.97654 0.89688 1.22697 1.13748 0.97166 1.00158 1.83944 1.65311 1.10258 1.01527 1.25232 1.07708 0.96150 1.03528 1.18888 1.04760 1.01179 0.89914 1.18412 1.06920 0.92306 0.88312 1.42632 1.52123 1.11591 1.08743 0.73703 1.22588 0.96943 1.00477 0.80552 1.22534 0.97109 0.97911 0.94605 0.89583 1.20612 0.96619 0.92656 0.86344 1.42365 1.79282 1.05955 1.10114 1.19188 1.36226 0.91222 0.90773 0.91185 1.24764 1.02284 0.95500 0.98343 1.69664 1.54182 1.04546 1.29469 0.86190 0.78167 0.78459 0.83337 1.21728 1.21741 1.20777 0.92525 0.91456 0.92773 0.91283 0.91123 0.82479 0.81046 0.84187 0.88750 0.90313 0.96068 0.95840 0.78161 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.90 37.15 0.33 -1.03 16 2 C -0.10 -1.03 3.17 -89.25 -0.28 -1.32 16 3 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 4 C 0.09 0.89 5.00 -2.98 -0.01 0.87 16 5 N -0.62 -8.45 3.29 -171.60 -0.57 -9.02 16 6 C 0.60 9.24 7.84 -12.95 -0.10 9.14 16 7 O -0.52 -9.89 17.06 5.15 0.09 -9.81 16 8 C 0.02 0.23 6.81 -82.10 -0.56 -0.33 16 9 C -0.07 -0.94 10.61 -38.95 -0.41 -1.35 16 10 C -0.22 -2.46 7.26 -38.67 -0.28 -2.74 16 11 S 0.13 1.12 23.31 -107.50 -2.51 -1.39 16 12 C -0.19 -1.30 11.13 28.86 0.32 -0.98 16 13 C -0.11 -0.87 10.16 -40.84 -0.42 -1.29 16 14 C 0.06 0.60 7.67 -84.00 -0.64 -0.04 16 15 N -0.54 -5.50 5.54 -7.34 -0.04 -5.54 16 16 H 0.42 3.23 5.40 -40.82 -0.22 3.01 16 17 C 0.12 1.82 6.47 -2.32 -0.01 1.81 16 18 C -0.10 -1.52 2.60 -88.93 -0.23 -1.76 16 19 H 0.09 1.41 7.86 -51.93 -0.41 1.00 16 20 C 0.17 3.09 5.59 -4.04 -0.02 3.06 16 21 N -0.73 -18.07 5.52 -59.91 -0.33 -18.40 16 22 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 23 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 26 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.53 7.92 -51.92 -0.41 0.12 16 34 H 0.07 0.59 5.68 -51.93 -0.30 0.29 16 35 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.09 1.77 7.81 -51.93 -0.41 1.36 16 39 H 0.08 1.23 7.95 -51.93 -0.41 0.82 16 40 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.38 10.13 7.67 -40.82 -0.31 9.82 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -33.56 366.37 -10.50 -44.06 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.79 Total: 8.06 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -2.58 Total: -3.27 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.21 Total: -60.52 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.51 Total: -1.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.56 -10.50 -44.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106833899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.588 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds