Wall clock time and date at job start Tue Mar 31 2020 18:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.29067 * 2 1 4 4 C 1.53998 * 110.32815 * 237.86328 * 2 1 3 5 5 N 1.47483 * 107.08494 * 242.31094 * 4 2 1 6 6 C 1.34775 * 127.03177 * 154.51659 * 5 4 2 7 7 O 1.21739 * 119.99815 * 185.62392 * 6 5 4 8 8 C 1.46454 * 120.00366 * 5.62681 * 6 5 4 9 9 C 1.37461 * 125.80679 * 186.71583 * 8 6 5 10 10 C 1.40660 * 107.55877 * 180.02562 * 9 8 6 11 11 S 1.76019 * 142.39898 * 180.02562 * 10 9 8 12 12 C 1.75590 * 91.31062 * 179.97438 * 11 10 9 13 13 C 1.32771 * 110.47478 * 0.02562 * 12 11 10 14 14 C 1.38246 * 108.02774 * 0.02562 * 10 9 8 15 15 N 1.37918 * 125.80384 * 6.75977 * 8 6 5 16 16 H 0.96999 * 125.68514 * 359.97438 * 15 8 6 17 17 C 1.48113 * 105.93283 * 334.77731 * 5 4 2 18 18 C 1.54598 * 103.42324 * 39.02492 * 17 5 4 19 19 H 1.08997 * 110.57681 * 81.16340 * 18 17 5 20 20 C 1.53001 * 110.99208 * 204.37472 * 18 17 5 21 21 N 1.46498 * 109.46630 * 288.65229 * 20 18 17 22 22 C 1.36938 * 119.99675 * 179.97438 * 21 20 18 23 23 H 1.08006 * 119.99920 * 359.97438 * 22 21 20 24 24 C 1.38812 * 120.00236 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99627 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00364 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47203 * 89.99580 * 26 24 22 28 28 H 1.48501 * 109.47299 * 210.00252 * 26 24 22 29 29 H 1.48502 * 109.47047 * 329.99814 * 26 24 22 30 30 H 1.09003 * 109.47232 * 180.68147 * 1 2 3 31 31 H 1.08998 * 109.47507 * 300.68355 * 1 2 3 32 32 H 1.09006 * 109.47167 * 60.68051 * 1 2 3 33 33 H 1.09008 * 109.91242 * 122.94987 * 4 2 1 34 34 H 1.08998 * 109.91699 * 1.67486 * 4 2 1 35 35 H 1.08000 * 126.22436 * 0.02562 * 9 8 6 36 36 H 1.07995 * 124.76267 * 179.97438 * 12 11 10 37 37 H 1.08001 * 122.16574 * 180.02562 * 13 12 11 38 38 H 1.09002 * 110.66239 * 157.50794 * 17 5 4 39 39 H 1.09002 * 110.66107 * 280.62485 * 17 5 4 40 40 H 1.09000 * 109.47060 * 48.64862 * 20 18 17 41 41 H 1.08995 * 109.47008 * 168.64843 * 20 18 17 42 42 H 0.96990 * 120.00574 * 359.97438 * 21 20 18 43 43 H 0.97000 * 119.99428 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0649 -0.7682 -1.2228 5 7 2.8297 -1.9203 -0.7101 6 6 3.0645 -3.0859 -1.3447 7 8 3.6277 -3.9939 -0.7613 8 6 2.6421 -3.2602 -2.7361 9 6 2.7019 -4.4309 -3.4541 10 6 2.2019 -4.1651 -4.7417 11 16 1.8756 -4.9252 -6.2954 12 6 1.2674 -3.4146 -6.9522 13 6 1.3278 -2.4532 -6.0385 14 6 1.8425 -2.8312 -4.7941 15 7 2.1174 -2.2775 -3.5492 16 1 1.9658 -1.3538 -3.2948 17 6 3.2816 -1.5368 0.6473 18 6 2.0693 -0.7720 1.2264 19 1 1.3209 -1.4691 1.6031 20 6 2.5071 0.1968 2.3267 21 7 2.9001 -0.5617 3.5169 22 6 3.3317 0.0973 4.6370 23 1 3.3828 1.1762 4.6428 24 6 3.7036 -0.6212 5.7650 25 7 3.6408 -1.9359 5.7580 26 14 4.2930 0.2777 7.2927 27 1 3.1327 0.5763 8.1700 28 1 5.2617 -0.5759 8.0264 29 1 4.9534 1.5473 6.8961 30 1 -0.3634 -1.0276 0.0122 31 1 -0.3634 0.5244 0.8838 32 1 -0.3634 0.5033 -0.8961 33 1 2.7166 -0.1221 -1.8111 34 1 1.2334 -1.1173 -1.8349 35 1 3.0665 -5.3819 -3.0949 36 1 0.8969 -3.2855 -7.9584 37 1 1.0000 -1.4446 -6.2427 38 1 3.4980 -2.4222 1.2450 39 1 4.1541 -0.8857 0.5925 40 1 3.3539 0.7866 1.9758 41 1 1.6799 0.8613 2.5760 42 1 2.8545 -1.5305 3.5116 43 1 3.9003 -2.4379 6.5464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106833899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:17 Heat of formation + Delta-G solvation = 34.609416 kcal Electronic energy + Delta-G solvation = -25674.081238 eV Core-core repulsion = 22039.192630 eV Total energy + Delta-G solvation = -3634.888608 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.56572 -40.93896 -39.16413 -36.57973 -36.21994 -34.29858 -33.11649 -32.16225 -30.95296 -29.41043 -27.55529 -27.11567 -25.25112 -24.21053 -23.25893 -22.37305 -21.76051 -21.18301 -20.29791 -19.43160 -18.87968 -17.64457 -17.41831 -16.78770 -16.60938 -16.42024 -15.94736 -15.64706 -15.34089 -15.16287 -15.02591 -14.93468 -14.69647 -14.50194 -14.19550 -13.89305 -13.69363 -13.42212 -13.23263 -12.95744 -12.83593 -12.76483 -12.56009 -12.50283 -12.16274 -11.97953 -11.86328 -11.74160 -11.63350 -11.51792 -11.37091 -10.94568 -10.80682 -9.97902 -9.13576 -9.00990 -8.66805 -7.95226 -5.24823 -0.29119 0.57059 0.79605 1.16297 1.46488 1.48628 1.53124 1.57050 1.77360 1.91491 2.10321 2.55411 3.23712 3.38455 3.39789 3.60944 3.72954 3.80808 3.97449 4.04207 4.15255 4.24280 4.34765 4.40252 4.45642 4.51562 4.52205 4.68295 4.74854 4.75386 4.82240 4.86220 4.97658 5.02460 5.08203 5.14101 5.21554 5.29321 5.38882 5.45317 5.50172 5.55081 6.24239 6.26166 6.31801 6.81954 7.32139 8.08481 8.29561 9.28469 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027481 B = 0.002270 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.626726 B =12332.380664 C =13104.531503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.114 0.886 4 C 0.088 3.912 5 N -0.617 5.617 6 C 0.597 3.403 7 O -0.572 6.572 8 C -0.002 4.002 9 C -0.085 4.085 10 C -0.253 4.253 11 S 0.127 5.873 12 C -0.165 4.165 13 C -0.127 4.127 14 C 0.072 3.928 15 N -0.531 5.531 16 H 0.432 0.568 17 C 0.118 3.882 18 C -0.093 4.093 19 H 0.065 0.935 20 C 0.165 3.835 21 N -0.749 5.749 22 C -0.242 4.242 23 H 0.081 0.919 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.975 3.025 27 H -0.286 1.286 28 H -0.299 1.299 29 H -0.266 1.266 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.147 0.853 36 H 0.210 0.790 37 H 0.174 0.826 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.371 0.629 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.862 3.962 -31.255 32.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.132 0.868 4 C -0.033 4.033 5 N -0.349 5.349 6 C 0.388 3.612 7 O -0.452 6.452 8 C -0.116 4.116 9 C -0.116 4.116 10 C -0.373 4.373 11 S 0.386 5.614 12 C -0.301 4.301 13 C -0.159 4.159 14 C -0.048 4.048 15 N -0.139 5.139 16 H 0.277 0.723 17 C -0.004 4.004 18 C -0.113 4.113 19 H 0.083 0.917 20 C 0.039 3.961 21 N -0.391 5.391 22 C -0.373 4.373 23 H 0.099 0.901 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.804 3.196 27 H -0.214 1.214 28 H -0.226 1.226 29 H -0.191 1.191 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.165 0.835 36 H 0.227 0.773 37 H 0.191 0.809 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.202 0.798 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.343 2.336 -31.405 32.578 hybrid contribution 0.396 1.182 2.364 2.673 sum -7.946 3.518 -29.041 30.313 Atomic orbital electron populations 1.21854 0.92693 1.01809 1.03469 1.22073 0.97434 1.00128 0.90862 0.86821 1.22760 0.95925 0.86797 0.97862 1.48752 1.53299 1.14933 1.17907 1.16908 0.78800 0.80989 0.84522 1.90878 1.45348 1.41472 1.67470 1.19806 1.10498 0.90267 0.91071 1.20508 1.02725 0.97507 0.90878 1.22930 1.15065 0.98615 1.00676 1.84003 1.65461 1.11715 1.00195 1.25759 1.05238 0.94365 1.04757 1.19215 1.05131 1.03057 0.88533 1.18916 1.05359 0.91772 0.88786 1.42451 1.51541 1.11582 1.08363 0.72277 1.22370 0.97676 0.98789 0.81596 1.22340 0.96210 0.97303 0.95452 0.91653 1.20797 0.96980 0.93033 0.85289 1.42644 1.79326 1.05689 1.11470 1.19660 1.34349 0.91845 0.91481 0.90088 1.25634 1.03681 0.96244 1.01708 1.69845 1.56306 1.06222 1.29984 0.85114 0.77430 0.77600 0.79466 1.21353 1.22606 1.19054 0.93714 0.92223 0.89387 0.87914 0.89066 0.83513 0.77342 0.80854 0.93082 0.90021 0.95009 0.94860 0.79801 0.94146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.90 71.98 0.64 -1.64 16 2 C -0.09 -1.60 3.17 -9.91 -0.03 -1.63 16 3 H 0.11 1.71 7.85 -2.38 -0.02 1.70 16 4 C 0.09 1.48 5.00 86.53 0.43 1.91 16 5 N -0.62 -17.00 3.29 -815.01 -2.68 -19.69 16 6 C 0.60 19.32 7.84 86.38 0.68 20.00 16 7 O -0.57 -23.99 17.06 -4.47 -0.08 -24.07 16 8 C 0.00 -0.05 6.81 40.14 0.27 0.22 16 9 C -0.08 -2.25 10.61 22.68 0.24 -2.01 16 10 C -0.25 -5.53 7.26 22.86 0.17 -5.37 16 11 S 0.13 1.95 23.31 -56.49 -1.32 0.63 16 12 C -0.17 -1.54 11.13 66.64 0.74 -0.80 16 13 C -0.13 -1.39 10.16 21.49 0.22 -1.17 16 14 C 0.07 1.29 7.67 38.40 0.29 1.58 16 15 N -0.53 -9.64 5.54 -177.14 -0.98 -10.62 16 16 H 0.43 5.18 5.40 -92.71 -0.50 4.67 16 17 C 0.12 3.89 6.47 86.61 0.56 4.45 16 18 C -0.09 -2.80 2.60 -9.70 -0.03 -2.83 16 19 H 0.06 2.24 7.86 -2.39 -0.02 2.22 16 20 C 0.17 6.10 5.59 86.38 0.48 6.58 16 21 N -0.75 -37.85 5.52 -343.46 -1.90 -39.75 16 22 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 23 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 24 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 25 N -0.97 -61.36 13.06 21.65 0.28 -61.08 16 26 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 27 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 28 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 29 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.10 1.13 7.92 -2.38 -0.02 1.11 16 34 H 0.09 1.20 5.68 -2.39 -0.01 1.18 16 35 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 36 H 0.21 0.37 8.06 -2.91 -0.02 0.35 16 37 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 38 H 0.05 2.11 7.81 -2.39 -0.02 2.10 16 39 H 0.08 2.61 7.95 -2.39 -0.02 2.60 16 40 H 0.03 1.13 8.00 -2.39 -0.02 1.11 16 41 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.37 20.59 7.67 -92.72 -0.71 19.88 16 43 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -78.05 366.37 1.17 -76.87 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -0.16 Total: 26.58 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 5.98 Total: 2.48 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -5.28 Total: -131.14 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.08 Total: -24.07 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.32 Total: 0.63 kcal Total: -78.05 1.17 -76.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106833899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.484 kcal (2) G-P(sol) polarization free energy of solvation -78.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds