Wall clock time and date at job start Tue Mar 31 2020 18:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.29321 * 2 1 4 4 C 1.54005 * 110.33025 * 237.86264 * 2 1 3 5 5 N 1.47484 * 107.08677 * 242.31626 * 4 2 1 6 6 C 1.34778 * 127.03477 * 154.51536 * 5 4 2 7 7 O 1.21732 * 119.99830 * 185.59833 * 6 5 4 8 8 C 1.46415 * 119.99691 * 5.32495 * 6 5 4 9 9 C 1.35776 * 124.95348 * 186.54056 * 8 6 5 10 10 C 1.38878 * 115.18244 * 179.97438 * 9 8 6 11 11 N 1.39743 * 139.91298 * 179.97438 * 10 9 8 12 12 H 0.96999 * 125.63417 * 0.04917 * 11 10 9 13 13 C 1.36212 * 108.73394 * 180.02562 * 11 10 9 14 14 C 1.34510 * 109.29858 * 0.02562 * 13 11 10 15 15 C 1.38245 * 113.39231 * 359.97438 * 10 9 8 16 16 S 1.75613 * 124.96264 * 6.23456 * 8 6 5 17 17 C 1.48117 * 105.93003 * 334.77763 * 5 4 2 18 18 C 1.54598 * 103.42322 * 39.02743 * 17 5 4 19 19 H 1.08995 * 110.58002 * 81.17001 * 18 17 5 20 20 C 1.53001 * 110.98709 * 204.37407 * 18 17 5 21 21 N 1.46501 * 109.46868 * 288.64964 * 20 18 17 22 22 C 1.36939 * 119.99728 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00241 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99958 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99652 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99903 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47413 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46862 * 119.99996 * 26 24 22 29 29 H 1.48500 * 109.47299 * 239.99972 * 26 24 22 30 30 H 1.08999 * 109.47187 * 180.67498 * 1 2 3 31 31 H 1.08991 * 109.47569 * 300.68517 * 1 2 3 32 32 H 1.09006 * 109.46325 * 60.67968 * 1 2 3 33 33 H 1.09003 * 109.91106 * 122.94990 * 4 2 1 34 34 H 1.09003 * 109.91221 * 1.67544 * 4 2 1 35 35 H 1.08002 * 122.41146 * 0.02562 * 9 8 6 36 36 H 1.07997 * 125.35203 * 180.02562 * 13 11 10 37 37 H 1.07995 * 126.07793 * 180.02562 * 14 13 11 38 38 H 1.09002 * 110.66400 * 157.50889 * 17 5 4 39 39 H 1.08998 * 110.66513 * 280.62701 * 17 5 4 40 40 H 1.08997 * 109.47647 * 48.64854 * 20 18 17 41 41 H 1.08998 * 109.47432 * 168.64995 * 20 18 17 42 42 H 0.96999 * 120.00428 * 0.02562 * 21 20 18 43 43 H 0.97001 * 119.99707 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0651 -0.7682 -1.2228 5 7 2.8298 -1.9204 -0.7102 6 6 3.0645 -3.0860 -1.3447 7 8 3.6280 -3.9938 -0.7614 8 6 2.6364 -3.2625 -2.7337 9 6 2.7061 -4.4277 -3.4271 10 6 2.2424 -4.3659 -4.7348 11 7 2.0782 -5.1904 -5.8510 12 1 2.3098 -6.1312 -5.8977 13 6 1.5386 -4.4549 -6.8626 14 6 1.3501 -3.1913 -6.4419 15 6 1.7875 -3.1117 -5.0971 16 16 1.9507 -1.9999 -3.7436 17 6 3.2816 -1.5369 0.6473 18 6 2.0692 -0.7721 1.2263 19 1 1.3208 -1.4692 1.6031 20 6 2.5070 0.1966 2.3267 21 7 2.8999 -0.5619 3.5170 22 6 3.3306 0.0971 4.6375 23 1 3.3810 1.1759 4.6436 24 6 3.7023 -0.6215 5.7655 25 7 3.6414 -1.9363 5.7578 26 14 4.2904 0.2774 7.2937 27 1 4.2672 1.7414 7.0465 28 1 3.3951 -0.0460 8.4334 29 1 5.6759 -0.1488 7.6162 30 1 -0.3633 -1.0276 0.0121 31 1 -0.3634 0.5244 0.8837 32 1 -0.3632 0.5033 -0.8961 33 1 2.7168 -0.1221 -1.8111 34 1 1.2335 -1.1173 -1.8349 35 1 3.0934 -5.3375 -2.9928 36 1 1.2997 -4.8277 -7.8476 37 1 0.9371 -2.3817 -7.0252 38 1 3.4980 -2.4223 1.2451 39 1 4.1540 -0.8858 0.5927 40 1 3.3538 0.7864 1.9759 41 1 1.6799 0.8611 2.5761 42 1 2.8550 -1.5309 3.5114 43 1 3.9015 -2.4385 6.5459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106923065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:22 Heat of formation + Delta-G solvation = 51.848293 kcal Electronic energy + Delta-G solvation = -25527.453341 eV Core-core repulsion = 21893.312268 eV Total energy + Delta-G solvation = -3634.141074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42891 -40.06076 -37.95893 -35.18558 -34.65211 -32.83322 -31.42845 -31.18546 -29.57736 -28.20543 -26.50629 -25.63665 -23.88938 -22.92940 -21.72549 -21.16178 -20.90256 -19.93567 -18.78092 -18.65962 -17.14072 -16.78943 -16.06279 -15.66357 -15.52973 -14.97706 -14.62825 -14.47937 -14.29329 -13.97971 -13.78649 -13.55719 -13.31174 -13.13957 -12.92856 -12.89604 -12.38114 -12.31421 -12.07929 -11.86709 -11.62688 -11.39077 -11.12486 -10.88057 -10.83353 -10.52582 -10.43605 -10.33005 -10.00363 -9.93009 -9.91751 -9.64310 -8.85859 -8.65444 -8.35966 -7.84790 -6.89466 -5.72690 -3.02040 0.37014 1.27717 1.80971 2.18143 2.38522 2.62728 3.05360 3.21088 3.46118 3.51256 3.53911 4.35863 4.56663 4.60261 4.60844 4.69978 4.83864 4.89137 5.01951 5.20830 5.28678 5.42442 5.50669 5.53907 5.56177 5.60931 5.67346 5.74105 5.81388 5.82898 5.99699 6.09174 6.15078 6.21329 6.22883 6.23653 6.42590 6.45761 6.50291 6.73847 6.86676 7.09507 7.55440 7.73338 8.14199 8.45449 9.56730 10.14145 10.48349 11.49992 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027294 B = 0.002409 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.633765 B =11620.962058 C =12394.350301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.090 0.910 4 C 0.092 3.908 5 N -0.616 5.616 6 C 0.606 3.394 7 O -0.528 6.528 8 C -0.229 4.229 9 C -0.034 4.034 10 C 0.023 3.977 11 N -0.558 5.558 12 H 0.419 0.581 13 C 0.055 3.945 14 C -0.173 4.173 15 C -0.204 4.204 16 S 0.178 5.822 17 C 0.117 3.883 18 C -0.102 4.102 19 H 0.085 0.915 20 C 0.165 3.835 21 N -0.733 5.733 22 C -0.240 4.240 23 H 0.071 0.929 24 C -0.014 4.014 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.149 0.851 36 H 0.177 0.823 37 H 0.146 0.854 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.384 0.616 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.131 -1.833 -28.914 29.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.109 0.891 4 C -0.033 4.033 5 N -0.349 5.349 6 C 0.394 3.606 7 O -0.406 6.406 8 C -0.349 4.349 9 C -0.070 4.070 10 C -0.090 4.090 11 N -0.159 5.159 12 H 0.257 0.743 13 C -0.078 4.078 14 C -0.202 4.202 15 C -0.325 4.325 16 S 0.442 5.558 17 C -0.005 4.005 18 C -0.122 4.122 19 H 0.103 0.897 20 C 0.037 3.963 21 N -0.377 5.377 22 C -0.371 4.371 23 H 0.089 0.911 24 C -0.210 4.210 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.166 0.834 36 H 0.194 0.806 37 H 0.164 0.836 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.218 0.782 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.039 -0.898 -28.302 29.178 hybrid contribution 0.716 -1.850 0.459 2.036 sum -6.323 -2.748 -27.844 28.684 Atomic orbital electron populations 1.21851 0.93990 1.02127 1.02054 1.22057 0.96495 0.99678 0.93234 0.89128 1.22423 0.95786 0.87925 0.97134 1.48634 1.53334 1.14305 1.18607 1.16393 0.79240 0.81228 0.83738 1.90873 1.43371 1.39803 1.66588 1.23705 1.14130 0.98178 0.98934 1.19226 0.99064 0.98823 0.89853 1.17999 1.10044 0.90419 0.90581 1.41920 1.53188 1.11508 1.09298 0.74349 1.21869 1.00943 0.91554 0.93480 1.20131 1.10154 0.97174 0.92752 1.23681 1.10083 0.98078 1.00664 1.84064 1.63138 1.09533 0.99039 1.22557 0.96950 1.00320 0.80642 1.22530 0.97101 0.97908 0.94658 0.89664 1.20623 0.96631 0.92694 0.86312 1.42388 1.79263 1.05969 1.10130 1.19249 1.35866 0.91265 0.90707 0.91113 1.24761 1.02437 0.95495 0.98338 1.69677 1.54386 1.04529 1.29363 0.86124 0.78080 0.78601 0.83415 1.20574 1.21924 1.21890 0.92552 0.91680 0.92579 0.90868 0.90127 0.83362 0.80609 0.83632 0.88977 0.90384 0.96019 0.95800 0.78184 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.90 37.16 0.33 -1.18 16 2 C -0.09 -1.13 3.17 -89.24 -0.28 -1.41 16 3 H 0.09 0.99 7.85 -51.93 -0.41 0.58 16 4 C 0.09 1.07 5.04 -2.98 -0.02 1.05 16 5 N -0.62 -9.26 3.29 -171.61 -0.57 -9.83 16 6 C 0.61 9.95 7.84 -12.97 -0.10 9.85 16 7 O -0.53 -10.58 16.98 5.16 0.09 -10.49 16 8 C -0.23 -3.09 6.30 -37.17 -0.23 -3.33 16 9 C -0.03 -0.41 9.88 -40.23 -0.40 -0.81 16 10 C 0.02 0.25 7.67 -84.01 -0.64 -0.40 16 11 N -0.56 -4.02 6.21 -10.89 -0.07 -4.09 16 12 H 0.42 1.75 8.96 -40.82 -0.37 1.39 16 13 C 0.06 0.34 11.85 -16.92 -0.20 0.14 16 14 C -0.17 -1.41 10.85 -39.60 -0.43 -1.84 16 15 C -0.20 -2.19 7.31 -38.28 -0.28 -2.47 16 16 S 0.18 1.91 18.94 -107.50 -2.04 -0.12 16 17 C 0.12 1.96 6.47 -2.31 -0.01 1.94 16 18 C -0.10 -1.62 2.60 -88.93 -0.23 -1.86 16 19 H 0.09 1.47 7.86 -51.93 -0.41 1.06 16 20 C 0.17 3.19 5.58 -4.04 -0.02 3.17 16 21 N -0.73 -18.46 5.52 -59.91 -0.33 -18.79 16 22 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 26 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.75 8.03 -51.93 -0.42 0.33 16 34 H 0.08 0.86 5.21 -38.26 -0.20 0.66 16 35 H 0.15 1.74 8.01 -52.49 -0.42 1.32 16 36 H 0.18 0.36 8.06 -52.49 -0.42 -0.06 16 37 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.09 1.81 7.81 -51.93 -0.41 1.40 16 39 H 0.08 1.29 7.94 -51.93 -0.41 0.88 16 40 H 0.02 0.42 8.00 -51.93 -0.42 0.00 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.38 10.33 7.67 -40.82 -0.31 10.01 16 43 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -35.16 365.98 -10.31 -45.47 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.85 Total: 7.16 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.77 Total: -4.51 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.24 Total: -60.62 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.04 Total: -0.12 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.16 -10.31 -45.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106923065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.318 kcal (2) G-P(sol) polarization free energy of solvation -35.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds