Wall clock time and date at job start Tue Mar 31 2020 18:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.29321 * 2 1 4 4 C 1.54005 * 110.33025 * 237.86264 * 2 1 3 5 5 N 1.47484 * 107.08677 * 242.31626 * 4 2 1 6 6 C 1.34778 * 127.03477 * 154.51536 * 5 4 2 7 7 O 1.21732 * 119.99830 * 185.59833 * 6 5 4 8 8 C 1.46415 * 119.99691 * 5.32495 * 6 5 4 9 9 C 1.35776 * 124.95348 * 186.54056 * 8 6 5 10 10 C 1.38878 * 115.18244 * 179.97438 * 9 8 6 11 11 N 1.39743 * 139.91298 * 179.97438 * 10 9 8 12 12 H 0.96999 * 125.63417 * 0.04917 * 11 10 9 13 13 C 1.36212 * 108.73394 * 180.02562 * 11 10 9 14 14 C 1.34510 * 109.29858 * 0.02562 * 13 11 10 15 15 C 1.38245 * 113.39231 * 359.97438 * 10 9 8 16 16 S 1.75613 * 124.96264 * 6.23456 * 8 6 5 17 17 C 1.48117 * 105.93003 * 334.77763 * 5 4 2 18 18 C 1.54598 * 103.42322 * 39.02743 * 17 5 4 19 19 H 1.08995 * 110.58002 * 81.17001 * 18 17 5 20 20 C 1.53001 * 110.98709 * 204.37407 * 18 17 5 21 21 N 1.46501 * 109.46868 * 288.64964 * 20 18 17 22 22 C 1.36939 * 119.99728 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00241 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99958 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99652 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99903 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47413 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46862 * 119.99996 * 26 24 22 29 29 H 1.48500 * 109.47299 * 239.99972 * 26 24 22 30 30 H 1.08999 * 109.47187 * 180.67498 * 1 2 3 31 31 H 1.08991 * 109.47569 * 300.68517 * 1 2 3 32 32 H 1.09006 * 109.46325 * 60.67968 * 1 2 3 33 33 H 1.09003 * 109.91106 * 122.94990 * 4 2 1 34 34 H 1.09003 * 109.91221 * 1.67544 * 4 2 1 35 35 H 1.08002 * 122.41146 * 0.02562 * 9 8 6 36 36 H 1.07997 * 125.35203 * 180.02562 * 13 11 10 37 37 H 1.07995 * 126.07793 * 180.02562 * 14 13 11 38 38 H 1.09002 * 110.66400 * 157.50889 * 17 5 4 39 39 H 1.08998 * 110.66513 * 280.62701 * 17 5 4 40 40 H 1.08997 * 109.47647 * 48.64854 * 20 18 17 41 41 H 1.08998 * 109.47432 * 168.64995 * 20 18 17 42 42 H 0.96999 * 120.00428 * 0.02562 * 21 20 18 43 43 H 0.97001 * 119.99707 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0651 -0.7682 -1.2228 5 7 2.8298 -1.9204 -0.7102 6 6 3.0645 -3.0860 -1.3447 7 8 3.6280 -3.9938 -0.7614 8 6 2.6364 -3.2625 -2.7337 9 6 2.7061 -4.4277 -3.4271 10 6 2.2424 -4.3659 -4.7348 11 7 2.0782 -5.1904 -5.8510 12 1 2.3098 -6.1312 -5.8977 13 6 1.5386 -4.4549 -6.8626 14 6 1.3501 -3.1913 -6.4419 15 6 1.7875 -3.1117 -5.0971 16 16 1.9507 -1.9999 -3.7436 17 6 3.2816 -1.5369 0.6473 18 6 2.0692 -0.7721 1.2263 19 1 1.3208 -1.4692 1.6031 20 6 2.5070 0.1966 2.3267 21 7 2.8999 -0.5619 3.5170 22 6 3.3306 0.0971 4.6375 23 1 3.3810 1.1759 4.6436 24 6 3.7023 -0.6215 5.7655 25 7 3.6414 -1.9363 5.7578 26 14 4.2904 0.2774 7.2937 27 1 4.2672 1.7414 7.0465 28 1 3.3951 -0.0460 8.4334 29 1 5.6759 -0.1488 7.6162 30 1 -0.3633 -1.0276 0.0121 31 1 -0.3634 0.5244 0.8837 32 1 -0.3632 0.5033 -0.8961 33 1 2.7168 -0.1221 -1.8111 34 1 1.2335 -1.1173 -1.8349 35 1 3.0934 -5.3375 -2.9928 36 1 1.2997 -4.8277 -7.8476 37 1 0.9371 -2.3817 -7.0252 38 1 3.4980 -2.4223 1.2451 39 1 4.1540 -0.8858 0.5927 40 1 3.3538 0.7864 1.9759 41 1 1.6799 0.8611 2.5761 42 1 2.8550 -1.5309 3.5114 43 1 3.9015 -2.4385 6.5459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106923065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:21 Heat of formation + Delta-G solvation = 28.037631 kcal Electronic energy + Delta-G solvation = -25528.485849 eV Core-core repulsion = 21893.312268 eV Total energy + Delta-G solvation = -3635.173582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.10037 -41.27766 -39.22187 -36.47607 -36.05918 -34.24701 -33.06479 -31.85373 -31.02765 -29.28183 -27.47909 -27.12693 -25.34544 -24.27596 -22.76917 -22.25095 -21.62098 -21.19661 -19.88139 -19.47453 -19.00953 -17.88606 -17.36106 -16.71785 -16.55394 -16.45778 -15.83711 -15.59180 -15.41823 -15.16441 -15.02431 -14.88756 -14.45661 -14.38550 -14.13317 -13.80169 -13.62866 -13.45811 -13.21793 -12.96201 -12.88687 -12.78234 -12.52252 -12.47719 -12.16302 -11.96347 -11.89389 -11.70397 -11.56105 -11.37539 -11.24424 -10.93966 -10.65196 -9.88159 -9.13128 -8.98886 -8.57214 -7.93556 -5.22944 -0.52910 0.44615 0.98206 1.34975 1.47558 1.48930 1.59032 1.67675 1.75339 2.08157 2.23350 2.56893 3.30750 3.40742 3.49986 3.69136 3.80254 3.95754 4.14282 4.17303 4.19749 4.21930 4.35962 4.49543 4.51833 4.56122 4.59669 4.71160 4.77766 4.80731 4.86849 4.97357 5.01796 5.06305 5.10322 5.19947 5.26344 5.34578 5.50257 5.53746 5.58929 5.81173 6.27958 6.36345 6.61443 6.90189 7.33787 8.10262 8.31813 9.30480 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027294 B = 0.002409 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.633765 B =11620.962058 C =12394.350301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 H 0.112 0.888 4 C 0.091 3.909 5 N -0.616 5.616 6 C 0.600 3.400 7 O -0.584 6.584 8 C -0.271 4.271 9 C -0.026 4.026 10 C -0.010 4.010 11 N -0.549 5.549 12 H 0.433 0.567 13 C 0.089 3.911 14 C -0.198 4.198 15 C -0.210 4.210 16 S 0.210 5.790 17 C 0.119 3.881 18 C -0.092 4.092 19 H 0.066 0.934 20 C 0.166 3.834 21 N -0.749 5.749 22 C -0.239 4.239 23 H 0.082 0.918 24 C -0.082 4.082 25 N -0.973 5.973 26 Si 0.975 3.025 27 H -0.261 1.261 28 H -0.295 1.295 29 H -0.296 1.296 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.226 0.774 37 H 0.167 0.833 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.032 0.968 41 H 0.035 0.965 42 H 0.371 0.629 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 0.076 -32.570 33.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 H 0.131 0.869 4 C -0.032 4.032 5 N -0.347 5.347 6 C 0.391 3.609 7 O -0.466 6.466 8 C -0.391 4.391 9 C -0.063 4.063 10 C -0.122 4.122 11 N -0.151 5.151 12 H 0.273 0.727 13 C -0.046 4.046 14 C -0.227 4.227 15 C -0.333 4.333 16 S 0.474 5.526 17 C -0.004 4.004 18 C -0.112 4.112 19 H 0.085 0.915 20 C 0.039 3.961 21 N -0.391 5.391 22 C -0.371 4.371 23 H 0.100 0.900 24 C -0.274 4.274 25 N -0.625 5.625 26 Si 0.804 3.196 27 H -0.185 1.185 28 H -0.222 1.222 29 H -0.224 1.224 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.158 0.842 36 H 0.242 0.758 37 H 0.185 0.815 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.202 0.798 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.461 1.078 -31.988 33.106 hybrid contribution 1.093 -2.493 1.339 3.033 sum -7.368 -1.415 -30.649 31.554 Atomic orbital electron populations 1.21852 0.92567 1.01920 1.03440 1.22074 0.97613 0.99992 0.90700 0.86946 1.22673 0.96354 0.86883 0.97309 1.48664 1.53272 1.15011 1.17765 1.16892 0.78430 0.80747 0.84878 1.90821 1.46038 1.41595 1.68184 1.23392 1.17486 1.00229 0.97989 1.19311 0.97964 0.98267 0.90789 1.17912 1.11786 0.91634 0.90870 1.42077 1.52395 1.12223 1.08452 0.72671 1.22725 0.96978 0.90577 0.94337 1.20573 1.11331 0.98960 0.91810 1.24116 1.09489 0.97898 1.01750 1.83625 1.62525 1.08152 0.98320 1.22352 0.97700 0.98697 0.81601 1.22339 0.96179 0.97315 0.95386 0.91528 1.20799 0.97031 0.93018 0.85229 1.42660 1.79314 1.05692 1.11448 1.19712 1.34097 0.91875 0.91387 0.90031 1.25640 1.03773 0.96258 1.01730 1.69857 1.56434 1.06229 1.29944 0.85037 0.76836 0.78359 0.79322 1.18524 1.22203 1.22377 0.93574 0.92024 0.89485 0.88525 0.88695 0.84215 0.75769 0.81531 0.93130 0.90193 0.95026 0.94687 0.79814 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.90 71.98 0.64 -2.01 16 2 C -0.08 -1.86 3.17 -9.90 -0.03 -1.89 16 3 H 0.11 2.07 7.85 -2.39 -0.02 2.05 16 4 C 0.09 1.99 5.04 86.53 0.44 2.42 16 5 N -0.62 -19.25 3.29 -815.04 -2.68 -21.94 16 6 C 0.60 21.08 7.84 86.37 0.68 21.76 16 7 O -0.58 -25.70 16.98 -4.45 -0.08 -25.77 16 8 C -0.27 -7.57 6.30 23.83 0.15 -7.42 16 9 C -0.03 -0.67 9.88 21.85 0.22 -0.46 16 10 C -0.01 -0.19 7.67 38.03 0.29 0.10 16 11 N -0.55 -6.32 6.21 -188.38 -1.17 -7.49 16 12 H 0.43 2.42 8.96 -92.71 -0.83 1.59 16 13 C 0.09 0.67 11.85 83.16 0.99 1.66 16 14 C -0.20 -2.48 10.85 22.26 0.24 -2.24 16 15 C -0.21 -4.07 7.31 23.11 0.17 -3.90 16 16 S 0.21 4.21 18.94 -56.49 -1.07 3.14 16 17 C 0.12 4.24 6.47 86.61 0.56 4.80 16 18 C -0.09 -2.99 2.60 -9.70 -0.03 -3.01 16 19 H 0.07 2.41 7.86 -2.39 -0.02 2.39 16 20 C 0.17 6.37 5.58 86.38 0.48 6.86 16 21 N -0.75 -38.73 5.52 -343.44 -1.90 -40.62 16 22 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 23 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 24 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 25 N -0.97 -62.11 13.06 21.65 0.28 -61.83 16 26 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 27 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 28 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 29 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.10 1.72 8.03 -2.39 -0.02 1.70 16 34 H 0.10 1.84 5.21 -11.08 -0.06 1.78 16 35 H 0.14 3.60 8.01 -2.91 -0.02 3.58 16 36 H 0.23 -0.56 8.06 -2.91 -0.02 -0.58 16 37 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.05 2.20 7.81 -2.39 -0.02 2.19 16 39 H 0.08 2.77 7.94 -2.39 -0.02 2.75 16 40 H 0.03 1.18 8.00 -2.39 -0.02 1.16 16 41 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.37 21.01 7.67 -92.71 -0.71 20.30 16 43 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -81.16 365.98 0.98 -80.18 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -0.53 Total: 25.48 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 6.10 Total: -0.39 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -5.47 Total: -131.88 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.08 Total: -25.77 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.07 Total: 3.14 kcal Total: -81.16 0.98 -80.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106923065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.222 kcal (2) G-P(sol) polarization free energy of solvation -81.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds