Wall clock time and date at job start Tue Mar 31 2020 17:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 111.00081 * 2 1 4 4 C 1.46897 * 110.99721 * 123.95397 * 2 1 3 5 5 C 1.53006 * 109.46912 * 164.38296 * 4 2 1 6 6 C 1.53000 * 109.46885 * 306.80254 * 5 4 2 7 7 C 1.47196 * 109.47109 * 186.79955 * 5 4 2 8 8 N 4.80341 * 126.64353 * 133.97007 * 2 1 3 9 9 N 1.46494 * 109.47006 * 66.80383 * 5 4 2 10 10 C 1.34783 * 120.00183 * 186.72412 * 9 5 4 11 11 O 1.21549 * 119.99513 * 0.02562 * 10 9 5 12 12 C 1.47861 * 120.00311 * 179.97438 * 10 9 5 13 13 C 1.39671 * 120.10026 * 0.02562 * 12 10 9 14 14 C 1.38034 * 120.04000 * 180.02562 * 13 12 10 15 15 C 1.38178 * 120.24350 * 359.67755 * 14 13 12 16 16 C 1.39186 * 120.20143 * 0.60042 * 15 14 13 17 17 S 1.76198 * 120.02309 * 179.69636 * 16 15 14 18 18 C 1.76204 * 99.99772 * 264.93644 * 17 16 15 19 19 H 1.07993 * 120.00397 * 5.03602 * 18 17 16 20 20 C 1.38736 * 119.99562 * 185.02882 * 18 17 16 21 21 N 1.31620 * 119.99597 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00039 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46772 * 90.00063 * 22 20 18 24 24 H 1.48499 * 109.47094 * 209.99626 * 22 20 18 25 25 H 1.48501 * 109.47333 * 330.00145 * 22 20 18 26 26 C 1.38879 * 119.95181 * 359.42755 * 16 15 14 27 27 H 1.08994 * 109.47199 * 300.88581 * 1 2 3 28 28 H 1.09003 * 109.46574 * 60.87903 * 1 2 3 29 29 H 1.08996 * 109.46895 * 180.87957 * 1 2 3 30 30 H 1.08996 * 109.47213 * 199.64738 * 3 2 1 31 31 H 1.09002 * 109.47146 * 319.64985 * 3 2 1 32 32 H 1.09003 * 109.47109 * 79.64853 * 3 2 1 33 33 H 1.08994 * 109.47318 * 44.38679 * 4 2 1 34 34 H 1.08993 * 109.47314 * 284.38024 * 4 2 1 35 35 H 1.09005 * 109.46670 * 186.90854 * 6 5 4 36 36 H 1.08996 * 109.47208 * 306.90424 * 6 5 4 37 37 H 1.08993 * 109.47205 * 66.91107 * 6 5 4 38 38 H 0.96999 * 120.00359 * 6.71932 * 9 5 4 39 39 H 1.08002 * 119.98051 * 359.97438 * 13 12 10 40 40 H 1.08007 * 119.88023 * 179.97438 * 14 13 12 41 41 H 1.08000 * 119.90286 * 180.31810 * 15 14 13 42 42 H 0.97005 * 119.99891 * 179.97438 * 21 20 18 43 43 H 1.08007 * 120.11858 * 180.29790 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4752 -1.0760 0.9027 6 6 3.6451 -1.7482 -0.4612 7 6 3.9610 -1.9789 1.9588 8 7 4.3359 -2.6758 2.7738 9 7 4.2458 0.1696 0.9326 10 6 5.5555 0.1596 0.6146 11 8 6.0971 -0.8828 0.3025 12 6 6.3331 1.4169 0.6443 13 6 5.7127 2.6160 1.0021 14 6 6.4397 3.7890 1.0289 15 6 7.7839 3.7822 0.7090 16 6 8.4111 2.5940 0.3454 17 16 10.1236 2.5921 -0.0694 18 6 10.0139 2.7359 -1.8221 19 1 9.0524 2.8763 -2.2934 20 6 11.1630 2.6691 -2.5967 21 7 11.0812 2.7770 -3.9060 22 14 12.8260 2.4258 -1.7817 23 1 13.1151 0.9734 -1.6707 24 1 13.8788 3.0788 -2.6004 25 1 12.8062 3.0315 -0.4259 26 6 7.6874 1.4090 0.3152 27 1 -0.3633 0.5275 0.8819 28 1 -0.3632 0.5001 -0.8978 29 1 -0.3633 -1.0275 0.0158 30 1 3.0292 1.3638 -0.3455 31 1 1.3945 1.9913 -0.6654 32 1 1.9533 1.7768 1.0110 33 1 1.4400 -1.6986 1.2358 34 1 1.8873 -0.1809 2.0508 35 1 4.6772 -2.0794 -0.5769 36 1 2.9781 -2.6076 -0.5283 37 1 3.4014 -1.0365 -1.2499 38 1 3.8134 1.0015 1.1813 39 1 4.6633 2.6255 1.2572 40 1 5.9573 4.7149 1.3056 41 1 8.3487 4.7023 0.7367 42 1 11.8846 2.7306 -4.4476 43 1 8.1725 0.4847 0.0380 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128796570.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:44 Heat of formation + Delta-G solvation = 41.997312 kcal Electronic energy + Delta-G solvation = -25790.952328 eV Core-core repulsion = 22156.384083 eV Total energy + Delta-G solvation = -3634.568244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.85614 -38.87899 -37.73179 -36.59149 -34.78840 -32.51455 -32.35282 -30.74469 -30.23377 -28.05405 -27.55153 -25.69625 -24.76889 -23.46736 -22.49984 -21.89531 -20.69732 -18.53581 -18.23695 -17.40664 -16.39795 -16.02201 -15.76564 -15.48765 -15.34881 -14.98954 -14.84403 -14.65089 -14.47633 -13.94012 -13.64872 -13.51782 -13.38429 -12.99837 -12.94574 -12.86799 -12.58049 -12.36860 -12.26080 -12.21884 -11.99545 -11.95975 -11.83239 -11.55666 -11.34870 -11.21627 -11.10985 -10.67316 -9.94692 -9.77965 -9.55627 -9.25643 -9.09607 -8.89665 -8.72938 -8.20713 -7.15873 -6.34433 -4.10253 1.00601 1.52727 2.20745 2.51624 2.81089 2.87911 3.12215 3.26537 3.28164 3.37733 3.48337 3.83090 4.00838 4.16101 4.24913 4.48577 4.62389 4.70969 4.81014 4.86758 4.91307 4.95272 5.04223 5.05323 5.10184 5.11868 5.18857 5.44374 5.48306 5.55232 5.59860 5.71371 5.79780 5.84439 6.06052 6.10682 6.26948 6.38590 6.41865 6.45667 6.49865 6.76836 7.03132 7.21803 7.32813 7.89685 8.08170 8.42857 9.09480 10.74899 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017013 B = 0.002873 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.441962 B = 9744.815397 C =10050.296000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.536 5.536 3 C 0.000 4.000 4 C 0.055 3.945 5 C 0.285 3.715 6 C -0.151 4.151 7 C 0.202 3.798 8 N -0.411 5.411 9 N -0.726 5.726 10 C 0.566 3.434 11 O -0.516 6.516 12 C -0.153 4.153 13 C -0.087 4.087 14 C -0.138 4.138 15 C -0.050 4.050 16 C -0.084 4.084 17 S -0.112 6.112 18 C -0.509 4.509 19 H 0.092 0.908 20 C 0.096 3.904 21 N -0.875 5.875 22 Si 0.857 3.143 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.239 1.239 26 C -0.014 4.014 27 H 0.028 0.972 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.406 0.594 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.134 0.866 42 H 0.272 0.728 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.748 -0.794 9.545 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.260 5.260 3 C -0.148 4.148 4 C -0.074 4.074 5 C 0.195 3.805 6 C -0.210 4.210 7 C -0.119 4.119 8 N -0.086 5.086 9 N -0.385 5.385 10 C 0.355 3.645 11 O -0.391 6.391 12 C -0.158 4.158 13 C -0.106 4.106 14 C -0.158 4.158 15 C -0.071 4.071 16 C -0.194 4.194 17 S 0.122 5.878 18 C -0.656 4.656 19 H 0.110 0.890 20 C -0.113 4.113 21 N -0.511 5.511 22 Si 0.681 3.319 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.163 1.163 26 C -0.036 4.036 27 H 0.046 0.954 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.246 0.754 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.152 0.848 42 H 0.082 0.918 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.542 -2.888 10.577 23.285 hybrid contribution -0.967 1.094 -0.105 1.464 sum -21.509 -1.794 10.472 23.990 Atomic orbital electron populations 1.22446 0.86260 1.02497 1.01186 1.61844 1.08356 1.14114 1.41642 1.22901 1.02791 0.88514 1.00561 1.22371 0.91948 1.00520 0.92608 1.17574 0.90000 0.81854 0.91121 1.22158 1.04735 1.01199 0.92861 1.29348 0.94053 0.94560 0.93930 1.81159 1.07126 1.09553 1.10774 1.46444 1.10227 1.09844 1.71954 1.18477 0.81008 0.89115 0.75870 1.90769 1.69665 1.32560 1.46129 1.19742 0.95087 0.92488 1.08434 1.21133 0.98724 0.92232 0.98496 1.21040 0.94483 0.97744 1.02485 1.21921 0.93952 0.97885 0.93314 1.22216 1.01162 0.94250 1.01801 1.83120 0.97692 1.96188 1.10778 1.22232 0.98619 1.57745 0.87016 0.89020 1.24734 0.98943 0.93363 0.94286 1.69922 1.29935 1.47351 1.03876 0.86748 0.83667 0.80048 0.81394 1.19013 1.19775 1.16349 1.21911 0.91521 0.98822 0.91323 0.95375 0.90688 0.91031 0.89626 0.90613 0.94958 0.88090 0.92899 0.89417 0.91261 0.89257 0.75392 0.86571 0.85530 0.84830 0.91782 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.49 60.07 0.57 0.67 16 2 N -0.54 -3.17 4.07 -251.27 -1.02 -4.19 16 3 C 0.00 0.00 8.21 60.06 0.49 0.50 16 4 C 0.06 0.34 4.18 -3.82 -0.02 0.33 16 5 C 0.28 2.74 0.74 -134.61 -0.10 2.64 16 6 C -0.15 -1.55 7.73 37.16 0.29 -1.27 16 7 C 0.20 2.55 13.19 -20.76 -0.27 2.28 16 8 N -0.41 -6.23 18.54 42.15 0.78 -5.45 16 9 N -0.73 -7.44 3.52 -51.16 -0.18 -7.62 16 10 C 0.57 8.32 7.20 -12.32 -0.09 8.23 16 11 O -0.52 -9.39 13.50 5.32 0.07 -9.31 16 12 C -0.15 -2.36 5.87 -105.00 -0.62 -2.97 16 13 C -0.09 -1.05 9.54 -39.12 -0.37 -1.42 16 14 C -0.14 -1.77 10.02 -39.68 -0.40 -2.16 16 15 C -0.05 -0.82 9.79 -39.25 -0.38 -1.21 16 16 C -0.08 -1.68 5.45 -38.99 -0.21 -1.89 16 17 S -0.11 -2.67 19.38 -107.50 -2.08 -4.75 16 18 C -0.51 -14.38 10.01 30.92 0.31 -14.07 16 19 H 0.09 2.80 8.02 -52.49 -0.42 2.38 16 20 C 0.10 2.73 5.50 -17.46 -0.10 2.64 16 21 N -0.87 -26.00 13.97 55.49 0.78 -25.22 16 22 Si 0.86 20.89 27.74 -169.99 -4.71 16.17 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.24 -5.64 6.74 56.52 0.38 -5.26 16 26 C -0.01 -0.27 9.34 -38.92 -0.36 -0.64 16 27 H 0.03 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 29 H 0.07 0.26 7.98 -51.93 -0.41 -0.16 16 30 H 0.09 0.59 6.02 -51.93 -0.31 0.27 16 31 H 0.08 0.36 7.90 -51.93 -0.41 -0.05 16 32 H 0.03 0.13 7.39 -51.93 -0.38 -0.25 16 33 H 0.10 0.51 7.88 -51.93 -0.41 0.10 16 34 H 0.05 0.28 7.82 -51.93 -0.41 -0.13 16 35 H 0.09 1.19 5.98 -51.93 -0.31 0.88 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.90 7.69 -51.93 -0.40 0.50 16 38 H 0.41 3.05 3.77 -40.82 -0.15 2.90 16 39 H 0.12 0.90 6.40 -52.49 -0.34 0.57 16 40 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 41 H 0.13 2.09 8.06 -52.49 -0.42 1.66 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.14 2.95 7.65 -52.48 -0.40 2.55 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -33.95 371.21 -7.66 -41.61 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.63 Total: 1.52 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.26 Total: -8.35 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.35 Total: -42.48 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.71 Total: 16.17 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.08 Total: -4.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.95 -7.66 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128796570.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.612 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds