Wall clock time and date at job start Tue Mar 31 2020 17:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 111.00081 * 2 1 4 4 C 1.46897 * 110.99721 * 123.95397 * 2 1 3 5 5 C 1.53006 * 109.46912 * 164.38296 * 4 2 1 6 6 C 1.53000 * 109.46885 * 306.80254 * 5 4 2 7 7 C 1.47196 * 109.47109 * 186.79955 * 5 4 2 8 8 N 4.80341 * 126.64353 * 133.97007 * 2 1 3 9 9 N 1.46494 * 109.47006 * 66.80383 * 5 4 2 10 10 C 1.34783 * 120.00183 * 186.72412 * 9 5 4 11 11 O 1.21549 * 119.99513 * 0.02562 * 10 9 5 12 12 C 1.47861 * 120.00311 * 179.97438 * 10 9 5 13 13 C 1.39671 * 120.10026 * 0.02562 * 12 10 9 14 14 C 1.38034 * 120.04000 * 180.02562 * 13 12 10 15 15 C 1.38178 * 120.24350 * 359.67755 * 14 13 12 16 16 C 1.39186 * 120.20143 * 0.60042 * 15 14 13 17 17 S 1.76198 * 120.02309 * 179.69636 * 16 15 14 18 18 C 1.76204 * 99.99772 * 264.93644 * 17 16 15 19 19 H 1.07993 * 120.00397 * 5.03602 * 18 17 16 20 20 C 1.38736 * 119.99562 * 185.02882 * 18 17 16 21 21 N 1.31620 * 119.99597 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00039 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46772 * 90.00063 * 22 20 18 24 24 H 1.48499 * 109.47094 * 209.99626 * 22 20 18 25 25 H 1.48501 * 109.47333 * 330.00145 * 22 20 18 26 26 C 1.38879 * 119.95181 * 359.42755 * 16 15 14 27 27 H 1.08994 * 109.47199 * 300.88581 * 1 2 3 28 28 H 1.09003 * 109.46574 * 60.87903 * 1 2 3 29 29 H 1.08996 * 109.46895 * 180.87957 * 1 2 3 30 30 H 1.08996 * 109.47213 * 199.64738 * 3 2 1 31 31 H 1.09002 * 109.47146 * 319.64985 * 3 2 1 32 32 H 1.09003 * 109.47109 * 79.64853 * 3 2 1 33 33 H 1.08994 * 109.47318 * 44.38679 * 4 2 1 34 34 H 1.08993 * 109.47314 * 284.38024 * 4 2 1 35 35 H 1.09005 * 109.46670 * 186.90854 * 6 5 4 36 36 H 1.08996 * 109.47208 * 306.90424 * 6 5 4 37 37 H 1.08993 * 109.47205 * 66.91107 * 6 5 4 38 38 H 0.96999 * 120.00359 * 6.71932 * 9 5 4 39 39 H 1.08002 * 119.98051 * 359.97438 * 13 12 10 40 40 H 1.08007 * 119.88023 * 179.97438 * 14 13 12 41 41 H 1.08000 * 119.90286 * 180.31810 * 15 14 13 42 42 H 0.97005 * 119.99891 * 179.97438 * 21 20 18 43 43 H 1.08007 * 120.11858 * 180.29790 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4752 -1.0760 0.9027 6 6 3.6451 -1.7482 -0.4612 7 6 3.9610 -1.9789 1.9588 8 7 4.3359 -2.6758 2.7738 9 7 4.2458 0.1696 0.9326 10 6 5.5555 0.1596 0.6146 11 8 6.0971 -0.8828 0.3025 12 6 6.3331 1.4169 0.6443 13 6 5.7127 2.6160 1.0021 14 6 6.4397 3.7890 1.0289 15 6 7.7839 3.7822 0.7090 16 6 8.4111 2.5940 0.3454 17 16 10.1236 2.5921 -0.0694 18 6 10.0139 2.7359 -1.8221 19 1 9.0524 2.8763 -2.2934 20 6 11.1630 2.6691 -2.5967 21 7 11.0812 2.7770 -3.9060 22 14 12.8260 2.4258 -1.7817 23 1 13.1151 0.9734 -1.6707 24 1 13.8788 3.0788 -2.6004 25 1 12.8062 3.0315 -0.4259 26 6 7.6874 1.4090 0.3152 27 1 -0.3633 0.5275 0.8819 28 1 -0.3632 0.5001 -0.8978 29 1 -0.3633 -1.0275 0.0158 30 1 3.0292 1.3638 -0.3455 31 1 1.3945 1.9913 -0.6654 32 1 1.9533 1.7768 1.0110 33 1 1.4400 -1.6986 1.2358 34 1 1.8873 -0.1809 2.0508 35 1 4.6772 -2.0794 -0.5769 36 1 2.9781 -2.6076 -0.5283 37 1 3.4014 -1.0365 -1.2499 38 1 3.8134 1.0015 1.1813 39 1 4.6633 2.6255 1.2572 40 1 5.9573 4.7149 1.3056 41 1 8.3487 4.7023 0.7367 42 1 11.8846 2.7306 -4.4476 43 1 8.1725 0.4847 0.0380 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128796570.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:43 Heat of formation + Delta-G solvation = 18.600638 kcal Electronic energy + Delta-G solvation = -25791.966884 eV Core-core repulsion = 22156.384083 eV Total energy + Delta-G solvation = -3635.582800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.87132 -39.89694 -38.75060 -37.52080 -35.70417 -34.71303 -33.39428 -32.00020 -31.33179 -28.40357 -28.17542 -27.91289 -25.67975 -24.48103 -23.70533 -22.54644 -21.80435 -20.08475 -19.29367 -18.95967 -17.28156 -17.13698 -17.09495 -16.68698 -16.30556 -16.05036 -15.92881 -15.59875 -15.51724 -15.18603 -14.96913 -14.71890 -14.43631 -14.32222 -13.99915 -13.80318 -13.62913 -13.34401 -13.30260 -13.09287 -13.05331 -12.87690 -12.76805 -12.66901 -12.60900 -12.38908 -12.29440 -12.14555 -11.85675 -11.22666 -11.07172 -10.87277 -10.56369 -9.97407 -9.75973 -9.25984 -9.14472 -8.53613 -6.27504 -0.23845 0.20730 1.05395 1.22522 1.30851 1.43275 1.55178 1.63125 1.71333 2.16382 2.21176 2.47731 2.62949 2.84722 2.96890 3.23351 3.46147 3.61979 3.85460 3.91515 3.98204 4.25366 4.32199 4.38993 4.44712 4.54116 4.61595 4.64548 4.68118 4.78743 4.86473 4.89494 4.92487 5.13810 5.16692 5.19838 5.21374 5.29269 5.38536 5.44313 5.69442 5.82074 6.00606 6.09018 6.10970 6.26548 6.35295 6.89205 6.99770 8.59825 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017013 B = 0.002873 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.441962 B = 9744.815397 C =10050.296000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C -0.006 4.006 4 C 0.063 3.937 5 C 0.285 3.715 6 C -0.147 4.147 7 C 0.220 3.780 8 N -0.459 5.459 9 N -0.701 5.701 10 C 0.565 3.435 11 O -0.560 6.560 12 C -0.158 4.158 13 C -0.058 4.058 14 C -0.119 4.119 15 C -0.057 4.057 16 C -0.118 4.118 17 S -0.121 6.121 18 C -0.521 4.521 19 H 0.048 0.952 20 C 0.042 3.958 21 N -0.918 5.918 22 Si 0.919 3.081 23 H -0.265 1.265 24 H -0.257 1.257 25 H -0.227 1.227 26 C -0.042 4.042 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.422 0.578 39 H 0.175 0.825 40 H 0.180 0.820 41 H 0.140 0.860 42 H 0.278 0.722 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.036 0.957 11.684 28.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.274 5.274 3 C -0.154 4.154 4 C -0.067 4.067 5 C 0.195 3.805 6 C -0.206 4.206 7 C -0.100 4.100 8 N -0.135 5.135 9 N -0.360 5.360 10 C 0.354 3.646 11 O -0.438 6.438 12 C -0.163 4.163 13 C -0.077 4.077 14 C -0.138 4.138 15 C -0.078 4.078 16 C -0.229 4.229 17 S 0.113 5.887 18 C -0.668 4.668 19 H 0.067 0.933 20 C -0.163 4.163 21 N -0.556 5.556 22 Si 0.740 3.260 23 H -0.190 1.190 24 H -0.181 1.181 25 H -0.150 1.150 26 C -0.064 4.064 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.266 0.734 39 H 0.192 0.808 40 H 0.198 0.802 41 H 0.158 0.842 42 H 0.087 0.913 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.885 -1.104 12.736 27.091 hybrid contribution -0.219 0.556 -0.771 0.976 sum -24.104 -0.547 11.965 26.916 Atomic orbital electron populations 1.22467 0.84925 1.03097 1.01747 1.61781 1.09509 1.14506 1.41561 1.22945 1.01911 0.88519 1.02013 1.22368 0.88832 1.01898 0.93582 1.17905 0.92087 0.80859 0.89675 1.22087 1.02832 1.02177 0.93458 1.29900 0.92718 0.93955 0.93428 1.81172 1.08705 1.11032 1.12633 1.46236 1.08547 1.11046 1.70192 1.18472 0.82254 0.88206 0.75671 1.90773 1.70908 1.33946 1.48203 1.19868 0.93630 0.94513 1.08246 1.21737 1.01111 0.90166 0.94659 1.21578 0.92492 1.00002 0.99723 1.22108 0.96019 0.96528 0.93150 1.22062 0.98945 0.96317 1.05569 1.82690 1.02689 1.96411 1.06878 1.22358 0.96977 1.57272 0.90188 0.93319 1.25686 1.02835 0.92941 0.94854 1.70025 1.31363 1.48719 1.05458 0.85809 0.78986 0.80057 0.81139 1.18955 1.18129 1.15040 1.21634 0.93652 0.97316 0.93762 0.94351 0.90543 0.90523 0.91244 0.89919 0.92771 0.86584 0.90903 0.93158 0.89241 0.88873 0.73376 0.80810 0.80242 0.84196 0.91282 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.49 127.69 1.21 1.32 16 2 N -0.55 -4.38 4.07 -948.87 -3.86 -8.24 16 3 C -0.01 -0.04 8.21 127.69 1.05 1.01 16 4 C 0.06 0.54 4.18 86.31 0.36 0.90 16 5 C 0.29 4.89 0.74 1.80 0.00 4.89 16 6 C -0.15 -2.91 7.73 71.98 0.56 -2.35 16 7 C 0.22 5.34 13.19 89.44 1.18 6.52 16 8 N -0.46 -13.85 18.54 20.00 0.37 -13.48 16 9 N -0.70 -12.58 3.52 -434.04 -1.53 -14.10 16 10 C 0.57 16.33 7.20 86.79 0.63 16.95 16 11 O -0.56 -21.34 13.50 -3.87 -0.05 -21.39 16 12 C -0.16 -4.72 5.87 -20.11 -0.12 -4.84 16 13 C -0.06 -1.15 9.54 22.57 0.22 -0.94 16 14 C -0.12 -2.49 10.02 22.21 0.22 -2.27 16 15 C -0.06 -1.82 9.79 22.48 0.22 -1.60 16 16 C -0.12 -4.89 5.45 22.65 0.12 -4.76 16 17 S -0.12 -5.99 19.38 -56.49 -1.09 -7.08 16 18 C -0.52 -31.08 10.01 67.94 0.68 -30.40 16 19 H 0.05 3.20 8.02 -2.91 -0.02 3.18 16 20 C 0.04 2.49 5.50 84.84 0.47 2.95 16 21 N -0.92 -56.82 13.97 21.64 0.30 -56.51 16 22 Si 0.92 44.22 27.74 68.60 1.90 46.12 16 23 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.23 -10.38 6.74 99.48 0.67 -9.71 16 26 C -0.04 -1.68 9.34 22.70 0.21 -1.47 16 27 H 0.04 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.08 0.34 8.09 -2.39 -0.02 0.32 16 29 H 0.08 0.28 7.98 -2.39 -0.02 0.26 16 30 H 0.07 0.67 6.02 -2.39 -0.01 0.66 16 31 H 0.08 0.45 7.90 -2.39 -0.02 0.43 16 32 H 0.05 0.12 7.39 -2.39 -0.02 0.10 16 33 H 0.12 0.72 7.88 -2.39 -0.02 0.70 16 34 H 0.07 0.39 7.82 -2.39 -0.02 0.37 16 35 H 0.05 1.41 5.98 -2.38 -0.01 1.40 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.78 7.69 -2.39 -0.02 1.76 16 38 H 0.42 4.40 3.77 -92.71 -0.35 4.05 16 39 H 0.17 1.43 6.40 -2.91 -0.02 1.41 16 40 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 42 H 0.28 15.81 8.31 -92.70 -0.77 15.03 16 43 H 0.10 4.87 7.65 -2.91 -0.02 4.85 16 Total: -1.00 -82.84 371.21 3.70 -79.14 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.65 Total: 9.63 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 7.01 Total: -14.08 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -4.71 Total: -92.34 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.05 Total: -21.39 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.90 Total: 46.12 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -1.09 Total: -7.08 kcal Total: -82.84 3.70 -79.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128796570.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.737 kcal (2) G-P(sol) polarization free energy of solvation -82.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds