Wall clock time and date at job start Tue Mar 31 2020 17:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46907 * 110.99801 * 2 1 4 4 C 1.46895 * 111.00329 * 123.95293 * 2 1 3 5 5 C 1.52996 * 109.47040 * 79.04690 * 4 2 1 6 6 C 1.52998 * 109.47284 * 173.19267 * 5 4 2 7 7 C 1.47203 * 109.47240 * 293.19250 * 5 4 2 8 8 N 3.69151 * 56.37594 * 167.25818 * 2 1 3 9 9 N 1.46505 * 109.47530 * 53.19146 * 5 4 2 10 10 C 1.34774 * 120.00387 * 179.97438 * 9 5 4 11 11 O 1.21555 * 119.99789 * 0.02562 * 10 9 5 12 12 C 1.47859 * 119.99966 * 180.02562 * 10 9 5 13 13 C 1.39672 * 120.10117 * 359.72154 * 12 10 9 14 14 C 1.38047 * 120.03724 * 179.78567 * 13 12 10 15 15 C 1.38179 * 120.24397 * 0.47503 * 14 13 12 16 16 C 1.39180 * 120.19953 * 359.78409 * 15 14 13 17 17 S 1.76198 * 120.01945 * 179.97438 * 16 15 14 18 18 C 1.76199 * 100.00058 * 265.12230 * 17 16 15 19 19 H 1.08006 * 120.00203 * 5.02162 * 18 17 16 20 20 C 1.38725 * 120.00392 * 185.02157 * 18 17 16 21 21 N 1.31621 * 120.00319 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00336 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47231 * 89.99840 * 22 20 18 24 24 H 1.48497 * 109.47297 * 209.99942 * 22 20 18 25 25 H 1.48498 * 109.46837 * 330.00054 * 22 20 18 26 26 C 1.38877 * 119.96320 * 359.97438 * 16 15 14 27 27 H 1.09003 * 109.47677 * 48.40877 * 1 2 3 28 28 H 1.09001 * 109.47430 * 168.41039 * 1 2 3 29 29 H 1.09000 * 109.47053 * 288.40438 * 1 2 3 30 30 H 1.09002 * 109.47011 * 63.95321 * 3 2 1 31 31 H 1.08994 * 109.46916 * 183.96027 * 3 2 1 32 32 H 1.09002 * 109.46959 * 303.95340 * 3 2 1 33 33 H 1.08998 * 109.46980 * 199.04612 * 4 2 1 34 34 H 1.08997 * 109.47138 * 319.04767 * 4 2 1 35 35 H 1.09005 * 109.47106 * 60.00306 * 6 5 4 36 36 H 1.08999 * 109.47161 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.47494 * 299.99874 * 6 5 4 38 38 H 0.97001 * 119.99180 * 0.02562 * 9 5 4 39 39 H 1.08000 * 119.98062 * 0.02562 * 13 12 10 40 40 H 1.08004 * 119.87521 * 180.21486 * 14 13 12 41 41 H 1.07992 * 119.90093 * 179.76302 * 15 14 13 42 42 H 0.96998 * 120.00521 * 180.02562 * 21 20 18 43 43 H 1.07996 * 120.12630 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 1.9224 -2.2614 0.8230 6 6 2.6234 -3.0504 1.9306 7 6 0.5127 -2.6773 0.7412 8 7 -0.5752 -2.9982 0.6780 9 7 2.5840 -2.5241 -0.4575 10 6 2.6433 -3.7811 -0.9401 11 8 2.1474 -4.6968 -0.3131 12 6 3.3116 -4.0462 -2.2321 13 6 3.8771 -2.9947 -2.9570 14 6 4.5046 -3.2444 -4.1610 15 6 4.5679 -4.5317 -4.6591 16 6 4.0031 -5.5862 -3.9476 17 16 4.0860 -7.2258 -4.5875 18 6 2.5280 -7.3140 -5.4058 19 1 1.8951 -6.4404 -5.4579 20 6 2.1142 -8.5056 -5.9832 21 7 2.8856 -9.5702 -5.9202 22 14 0.4628 -8.5989 -6.8513 23 1 0.6369 -8.2529 -8.2849 24 1 -0.0794 -9.9766 -6.7370 25 1 -0.4819 -7.6413 -6.2222 26 6 3.3742 -5.3454 -2.7331 27 1 -0.3634 0.6822 -0.7686 28 1 -0.3634 -1.0067 -0.2065 29 1 -0.3633 0.3245 0.9751 30 1 1.7043 1.8724 0.9233 31 1 3.0826 1.3433 -0.0710 32 1 1.5897 1.9164 -0.8525 33 1 3.0325 -0.4827 1.3174 34 1 1.4011 -0.5520 2.0258 35 1 2.1310 -2.8551 2.8833 36 1 2.5709 -4.1159 1.7067 37 1 3.6672 -2.7426 1.9912 38 1 2.9801 -1.7934 -0.9575 39 1 3.8268 -1.9864 -2.5735 40 1 4.9440 -2.4298 -4.7177 41 1 5.0569 -4.7202 -5.6034 42 1 2.5964 -10.4033 -6.3243 43 1 2.9354 -6.1617 -2.1787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128796571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:48 Heat of formation + Delta-G solvation = 35.498237 kcal Electronic energy + Delta-G solvation = -25682.831023 eV Core-core repulsion = 22047.980957 eV Total energy + Delta-G solvation = -3634.850065 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.63780 -38.84872 -37.65473 -36.26313 -35.04964 -32.49126 -32.21657 -30.58344 -30.06446 -28.06303 -27.55777 -25.55248 -24.45432 -23.32561 -22.31256 -22.05853 -20.64333 -18.43884 -18.08938 -17.39169 -16.38650 -15.99653 -15.60367 -15.41476 -15.22697 -14.84882 -14.82334 -14.45889 -14.23428 -13.87038 -13.65403 -13.45365 -13.37535 -13.01075 -12.95615 -12.91062 -12.68997 -12.45768 -12.29833 -12.21890 -11.95019 -11.81626 -11.61876 -11.26974 -11.13934 -11.09762 -11.05480 -10.68891 -9.94802 -9.75641 -9.44370 -9.14655 -9.00443 -8.94832 -8.58924 -8.01756 -6.69728 -6.27018 -4.00856 1.15373 1.68243 2.32786 2.65064 2.96073 3.20377 3.23774 3.26111 3.30261 3.35249 3.49041 3.62960 4.10767 4.22869 4.27631 4.52135 4.71029 4.79153 4.86162 4.94647 5.02192 5.09291 5.12546 5.14817 5.16916 5.24134 5.32109 5.42182 5.43230 5.48967 5.58759 5.74635 5.87719 5.94074 6.00615 6.18093 6.27011 6.40437 6.43101 6.59546 6.65260 6.94427 7.19878 7.39227 7.47746 7.59521 8.21361 8.34545 9.19157 10.79714 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.002945 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.466530 B = 9504.392431 C = 9979.539396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.547 5.547 3 C 0.023 3.977 4 C 0.051 3.949 5 C 0.286 3.714 6 C -0.166 4.166 7 C 0.209 3.791 8 N -0.415 5.415 9 N -0.709 5.709 10 C 0.565 3.435 11 O -0.526 6.526 12 C -0.154 4.154 13 C -0.086 4.086 14 C -0.141 4.141 15 C -0.054 4.054 16 C -0.107 4.107 17 S -0.035 6.035 18 C -0.519 4.519 19 H 0.075 0.925 20 C 0.074 3.926 21 N -0.870 5.870 22 Si 0.920 3.080 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.017 4.017 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.413 0.587 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.270 0.730 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.457 23.475 13.510 27.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.271 5.271 3 C -0.125 4.125 4 C -0.079 4.079 5 C 0.195 3.805 6 C -0.225 4.225 7 C -0.110 4.110 8 N -0.091 5.091 9 N -0.365 5.365 10 C 0.354 3.646 11 O -0.402 6.402 12 C -0.159 4.159 13 C -0.105 4.105 14 C -0.161 4.161 15 C -0.075 4.075 16 C -0.218 4.218 17 S 0.200 5.800 18 C -0.667 4.667 19 H 0.094 0.906 20 C -0.135 4.135 21 N -0.506 5.506 22 Si 0.745 3.255 23 H -0.201 1.201 24 H -0.206 1.206 25 H -0.196 1.196 26 C -0.039 4.039 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.252 0.748 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.079 0.921 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.466 21.054 13.439 25.099 hybrid contribution -1.790 1.753 -0.200 2.513 sum 0.676 22.808 13.239 26.380 Atomic orbital electron populations 1.22746 0.86668 1.03813 1.00678 1.61881 1.08703 1.14441 1.42032 1.22460 1.00956 0.88064 1.00994 1.22525 1.02672 0.89835 0.92879 1.17611 0.81104 0.95042 0.86783 1.22276 1.00790 1.03374 0.96048 1.29177 0.94860 0.92867 0.94126 1.81163 1.13149 1.08313 1.06496 1.45839 1.58981 1.09850 1.21856 1.18529 0.78651 0.82082 0.85300 1.90774 1.46183 1.43856 1.59415 1.19763 1.05235 0.95252 0.95613 1.21160 0.96974 0.97337 0.95048 1.21060 1.01557 0.97050 0.96445 1.21967 0.95414 0.91606 0.98519 1.22841 0.99767 1.02744 0.96458 1.83587 1.26617 1.03736 1.66076 1.22841 1.04020 0.99796 1.40033 0.90639 1.24989 0.98153 0.94493 0.95876 1.69980 1.36767 1.01220 1.42610 0.86136 0.82039 0.77739 0.79535 1.20135 1.20636 1.19563 1.21951 0.92810 0.95271 0.93887 0.90891 0.90620 0.95126 0.95316 0.90766 0.90894 0.87794 0.91695 0.90895 0.88782 0.90072 0.74787 0.86228 0.85822 0.85097 0.92062 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.01 60.06 0.54 0.62 16 2 N -0.55 -3.72 4.28 -251.27 -1.07 -4.80 16 3 C 0.02 0.10 9.48 60.07 0.57 0.67 16 4 C 0.05 0.30 4.25 -3.83 -0.02 0.28 16 5 C 0.29 2.71 0.78 -134.61 -0.10 2.60 16 6 C -0.17 -1.39 8.35 37.16 0.31 -1.08 16 7 C 0.21 2.80 9.99 -20.76 -0.21 2.59 16 8 N -0.42 -6.69 17.62 42.15 0.74 -5.94 16 9 N -0.71 -7.58 4.86 -51.16 -0.25 -7.83 16 10 C 0.57 8.67 7.19 -12.32 -0.09 8.58 16 11 O -0.53 -9.90 13.55 5.32 0.07 -9.83 16 12 C -0.15 -2.51 5.87 -105.00 -0.62 -3.13 16 13 C -0.09 -1.13 9.54 -39.12 -0.37 -1.50 16 14 C -0.14 -1.95 10.02 -39.67 -0.40 -2.35 16 15 C -0.05 -0.95 9.79 -39.25 -0.38 -1.33 16 16 C -0.11 -2.28 5.45 -39.00 -0.21 -2.49 16 17 S -0.03 -0.90 21.41 -107.50 -2.30 -3.20 16 18 C -0.52 -14.83 9.46 30.91 0.29 -14.54 16 19 H 0.08 2.15 7.79 -52.48 -0.41 1.74 16 20 C 0.07 2.10 5.49 -17.46 -0.10 2.00 16 21 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 22 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.02 -0.35 9.34 -38.92 -0.36 -0.72 16 27 H 0.07 0.55 7.98 -51.93 -0.41 0.13 16 28 H 0.08 0.86 4.76 -51.93 -0.25 0.61 16 29 H 0.03 0.23 7.89 -51.93 -0.41 -0.18 16 30 H 0.03 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.07 0.23 8.06 -51.93 -0.42 -0.19 16 32 H 0.07 0.32 8.04 -51.93 -0.42 -0.10 16 33 H 0.10 0.34 7.83 -51.93 -0.41 -0.06 16 34 H 0.06 0.34 7.77 -51.93 -0.40 -0.07 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 1.13 6.16 -51.93 -0.32 0.81 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.41 3.44 6.10 -40.82 -0.25 3.19 16 39 H 0.12 1.08 6.40 -52.49 -0.34 0.74 16 40 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 41 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.14 3.05 7.65 -52.49 -0.40 2.65 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -34.91 375.09 -8.28 -43.19 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.68 Total: 0.66 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -1.15 Total: -9.80 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.15 Total: -43.52 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.91 -8.28 -43.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128796571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.688 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds