Wall clock time and date at job start Tue Mar 31 2020 17:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46907 * 110.99801 * 2 1 4 4 C 1.46895 * 111.00329 * 123.95293 * 2 1 3 5 5 C 1.52996 * 109.47040 * 79.04690 * 4 2 1 6 6 C 1.52998 * 109.47284 * 173.19267 * 5 4 2 7 7 C 1.47203 * 109.47240 * 293.19250 * 5 4 2 8 8 N 3.69151 * 56.37594 * 167.25818 * 2 1 3 9 9 N 1.46505 * 109.47530 * 53.19146 * 5 4 2 10 10 C 1.34774 * 120.00387 * 179.97438 * 9 5 4 11 11 O 1.21555 * 119.99789 * 0.02562 * 10 9 5 12 12 C 1.47859 * 119.99966 * 180.02562 * 10 9 5 13 13 C 1.39672 * 120.10117 * 359.72154 * 12 10 9 14 14 C 1.38047 * 120.03724 * 179.78567 * 13 12 10 15 15 C 1.38179 * 120.24397 * 0.47503 * 14 13 12 16 16 C 1.39180 * 120.19953 * 359.78409 * 15 14 13 17 17 S 1.76198 * 120.01945 * 179.97438 * 16 15 14 18 18 C 1.76199 * 100.00058 * 265.12230 * 17 16 15 19 19 H 1.08006 * 120.00203 * 5.02162 * 18 17 16 20 20 C 1.38725 * 120.00392 * 185.02157 * 18 17 16 21 21 N 1.31621 * 120.00319 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00336 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47231 * 89.99840 * 22 20 18 24 24 H 1.48497 * 109.47297 * 209.99942 * 22 20 18 25 25 H 1.48498 * 109.46837 * 330.00054 * 22 20 18 26 26 C 1.38877 * 119.96320 * 359.97438 * 16 15 14 27 27 H 1.09003 * 109.47677 * 48.40877 * 1 2 3 28 28 H 1.09001 * 109.47430 * 168.41039 * 1 2 3 29 29 H 1.09000 * 109.47053 * 288.40438 * 1 2 3 30 30 H 1.09002 * 109.47011 * 63.95321 * 3 2 1 31 31 H 1.08994 * 109.46916 * 183.96027 * 3 2 1 32 32 H 1.09002 * 109.46959 * 303.95340 * 3 2 1 33 33 H 1.08998 * 109.46980 * 199.04612 * 4 2 1 34 34 H 1.08997 * 109.47138 * 319.04767 * 4 2 1 35 35 H 1.09005 * 109.47106 * 60.00306 * 6 5 4 36 36 H 1.08999 * 109.47161 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.47494 * 299.99874 * 6 5 4 38 38 H 0.97001 * 119.99180 * 0.02562 * 9 5 4 39 39 H 1.08000 * 119.98062 * 0.02562 * 13 12 10 40 40 H 1.08004 * 119.87521 * 180.21486 * 14 13 12 41 41 H 1.07992 * 119.90093 * 179.76302 * 15 14 13 42 42 H 0.96998 * 120.00521 * 180.02562 * 21 20 18 43 43 H 1.07996 * 120.12630 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 1.9224 -2.2614 0.8230 6 6 2.6234 -3.0504 1.9306 7 6 0.5127 -2.6773 0.7412 8 7 -0.5752 -2.9982 0.6780 9 7 2.5840 -2.5241 -0.4575 10 6 2.6433 -3.7811 -0.9401 11 8 2.1474 -4.6968 -0.3131 12 6 3.3116 -4.0462 -2.2321 13 6 3.8771 -2.9947 -2.9570 14 6 4.5046 -3.2444 -4.1610 15 6 4.5679 -4.5317 -4.6591 16 6 4.0031 -5.5862 -3.9476 17 16 4.0860 -7.2258 -4.5875 18 6 2.5280 -7.3140 -5.4058 19 1 1.8951 -6.4404 -5.4579 20 6 2.1142 -8.5056 -5.9832 21 7 2.8856 -9.5702 -5.9202 22 14 0.4628 -8.5989 -6.8513 23 1 0.6369 -8.2529 -8.2849 24 1 -0.0794 -9.9766 -6.7370 25 1 -0.4819 -7.6413 -6.2222 26 6 3.3742 -5.3454 -2.7331 27 1 -0.3634 0.6822 -0.7686 28 1 -0.3634 -1.0067 -0.2065 29 1 -0.3633 0.3245 0.9751 30 1 1.7043 1.8724 0.9233 31 1 3.0826 1.3433 -0.0710 32 1 1.5897 1.9164 -0.8525 33 1 3.0325 -0.4827 1.3174 34 1 1.4011 -0.5520 2.0258 35 1 2.1310 -2.8551 2.8833 36 1 2.5709 -4.1159 1.7067 37 1 3.6672 -2.7426 1.9912 38 1 2.9801 -1.7934 -0.9575 39 1 3.8268 -1.9864 -2.5735 40 1 4.9440 -2.4298 -4.7177 41 1 5.0569 -4.7202 -5.6034 42 1 2.5964 -10.4033 -6.3243 43 1 2.9354 -6.1617 -2.1787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128796571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:47 Heat of formation + Delta-G solvation = 10.262253 kcal Electronic energy + Delta-G solvation = -25683.925337 eV Core-core repulsion = 22047.980957 eV Total energy + Delta-G solvation = -3635.944380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.68544 -39.87514 -38.76921 -37.16868 -36.01662 -34.67285 -33.29744 -31.91415 -31.21141 -28.50579 -28.10181 -27.76030 -25.44981 -24.33401 -23.54585 -22.70654 -21.83378 -20.03818 -19.22838 -18.90103 -17.19303 -17.08131 -16.95492 -16.63592 -16.28515 -16.06784 -15.98947 -15.62733 -15.42668 -15.08369 -14.79466 -14.59419 -14.43707 -14.32103 -13.87128 -13.67583 -13.58168 -13.32354 -13.29500 -13.12506 -13.07559 -12.99041 -12.82543 -12.60442 -12.48005 -12.41347 -12.34986 -11.97503 -11.75343 -11.25885 -11.03347 -10.71503 -10.48955 -9.90432 -9.67871 -9.41771 -8.80521 -8.41210 -6.20380 -0.15733 0.29178 1.26989 1.31660 1.34211 1.42795 1.64967 1.66873 1.80542 2.20272 2.27835 2.71651 2.86074 2.89146 2.91504 3.40762 3.61579 3.65595 3.97229 4.00453 4.08954 4.23172 4.28203 4.39935 4.45497 4.52286 4.64119 4.66742 4.71960 4.74723 4.80767 4.84241 4.95134 4.95863 5.20639 5.21536 5.26924 5.32163 5.35079 5.38811 5.54295 5.90419 5.91243 6.01540 6.13677 6.40119 6.50759 6.99378 7.12318 8.65755 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.002945 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.466530 B = 9504.392431 C = 9979.539396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.556 5.556 3 C 0.024 3.976 4 C 0.056 3.944 5 C 0.280 3.720 6 C -0.164 4.164 7 C 0.225 3.775 8 N -0.476 5.476 9 N -0.683 5.683 10 C 0.564 3.436 11 O -0.570 6.570 12 C -0.156 4.156 13 C -0.057 4.057 14 C -0.120 4.120 15 C -0.062 4.062 16 C -0.131 4.131 17 S -0.094 6.094 18 C -0.537 4.537 19 H 0.064 0.936 20 C 0.021 3.979 21 N -0.905 5.905 22 Si 0.988 3.012 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.273 1.273 26 C -0.046 4.046 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.146 0.854 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.114 0.886 38 H 0.429 0.571 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.134 0.866 42 H 0.274 0.726 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.598 28.497 13.880 32.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.280 5.280 3 C -0.123 4.123 4 C -0.073 4.073 5 C 0.190 3.810 6 C -0.223 4.223 7 C -0.094 4.094 8 N -0.153 5.153 9 N -0.339 5.339 10 C 0.352 3.648 11 O -0.450 6.450 12 C -0.161 4.161 13 C -0.075 4.075 14 C -0.139 4.139 15 C -0.083 4.083 16 C -0.242 4.242 17 S 0.141 5.859 18 C -0.684 4.684 19 H 0.082 0.918 20 C -0.184 4.184 21 N -0.541 5.541 22 Si 0.810 3.190 23 H -0.184 1.184 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.068 4.068 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.163 0.837 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.271 0.729 39 H 0.196 0.804 40 H 0.195 0.805 41 H 0.152 0.848 42 H 0.083 0.917 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.634 26.134 13.809 29.781 hybrid contribution -2.082 0.377 -0.210 2.126 sum 1.552 26.511 13.600 29.836 Atomic orbital electron populations 1.22633 0.88229 1.01769 1.01083 1.61843 1.07433 1.16191 1.42530 1.22531 1.02126 0.86371 1.01321 1.22643 1.05340 0.86447 0.92907 1.18199 0.78607 0.98012 0.86220 1.22289 1.02932 1.00642 0.96428 1.30076 0.95611 0.91234 0.92484 1.81157 1.15350 1.10497 1.08261 1.45604 1.57666 1.08386 1.22260 1.18473 0.78314 0.83120 0.84847 1.90777 1.48070 1.45684 1.60444 1.19900 1.05343 0.94392 0.96478 1.21760 0.93403 0.98681 0.93698 1.21574 0.99707 0.96273 0.96365 1.22080 0.95189 0.92468 0.98594 1.22476 1.03477 1.00531 0.97724 1.83428 1.26149 1.09608 1.66748 1.23057 1.04866 0.99810 1.40664 0.91758 1.25958 1.01987 0.93977 0.96498 1.70096 1.38652 1.01801 1.43567 0.85100 0.77043 0.77939 0.78875 1.18361 1.19628 1.19821 1.21607 0.94576 0.96487 0.94099 0.90437 0.93981 0.94715 0.94652 0.88533 0.91087 0.83667 0.90482 0.88849 0.92861 0.86782 0.72901 0.80426 0.80502 0.84797 0.91670 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.01 127.69 1.15 1.32 16 2 N -0.56 -5.20 4.28 -948.87 -4.06 -9.26 16 3 C 0.02 0.09 9.48 127.69 1.21 1.30 16 4 C 0.06 0.40 4.25 86.30 0.37 0.76 16 5 C 0.28 4.56 0.78 1.80 0.00 4.57 16 6 C -0.16 -2.37 8.35 71.98 0.60 -1.77 16 7 C 0.22 5.94 9.99 89.44 0.89 6.83 16 8 N -0.48 -15.86 17.62 20.01 0.35 -15.51 16 9 N -0.68 -12.43 4.86 -434.04 -2.11 -14.54 16 10 C 0.56 16.85 7.19 86.79 0.62 17.47 16 11 O -0.57 -22.44 13.55 -3.89 -0.05 -22.49 16 12 C -0.16 -4.93 5.87 -20.11 -0.12 -5.05 16 13 C -0.06 -1.22 9.54 22.57 0.22 -1.00 16 14 C -0.12 -2.75 10.02 22.21 0.22 -2.52 16 15 C -0.06 -2.13 9.79 22.48 0.22 -1.91 16 16 C -0.13 -5.79 5.45 22.65 0.12 -5.67 16 17 S -0.09 -5.21 21.41 -56.49 -1.21 -6.42 16 18 C -0.54 -32.27 9.46 67.94 0.64 -31.63 16 19 H 0.06 3.85 7.79 -2.91 -0.02 3.83 16 20 C 0.02 1.24 5.49 84.84 0.47 1.71 16 21 N -0.90 -55.51 13.22 21.63 0.29 -55.23 16 22 Si 0.99 46.04 29.55 68.60 2.03 48.07 16 23 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 26 C -0.05 -1.95 9.34 22.70 0.21 -1.74 16 27 H 0.08 1.01 7.98 -2.39 -0.02 0.99 16 28 H 0.04 0.92 4.76 -2.39 -0.01 0.91 16 29 H 0.03 0.46 7.89 -2.39 -0.02 0.44 16 30 H 0.03 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.10 -0.03 8.06 -2.39 -0.02 -0.05 16 32 H 0.07 0.32 8.04 -2.39 -0.02 0.30 16 33 H 0.15 -0.08 7.83 -2.39 -0.02 -0.09 16 34 H 0.08 0.45 7.77 -2.39 -0.02 0.43 16 35 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.05 1.27 6.16 -2.39 -0.01 1.26 16 37 H 0.11 0.89 8.14 -2.39 -0.02 0.88 16 38 H 0.43 4.77 6.10 -92.71 -0.57 4.20 16 39 H 0.18 1.78 6.40 -2.91 -0.02 1.76 16 40 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 42 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.10 4.86 7.65 -2.91 -0.02 4.84 16 Total: -1.00 -87.02 375.09 2.55 -84.48 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.48 Total: 8.23 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 6.83 Total: -17.32 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -5.53 Total: -94.54 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.05 Total: -22.49 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -1.21 Total: -6.42 kcal Total: -87.02 2.55 -84.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128796571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.738 kcal (2) G-P(sol) polarization free energy of solvation -87.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds