Wall clock time and date at job start Tue Mar 31 2020 18:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46721 * 2 1 4 4 C 1.52997 * 109.46875 * 239.99865 * 2 1 3 5 5 C 1.53005 * 109.46635 * 174.99953 * 4 2 1 6 6 H 1.09000 * 109.47068 * 55.00166 * 5 4 2 7 7 C 1.52999 * 109.46590 * 174.99552 * 5 4 2 8 8 N 1.46495 * 109.47135 * 294.99370 * 5 4 2 9 9 C 1.34776 * 119.99654 * 154.99838 * 8 5 4 10 10 O 1.21613 * 120.00376 * 0.02562 * 9 8 5 11 11 C 1.47395 * 119.99857 * 180.02562 * 9 8 5 12 12 C 1.38868 * 120.01719 * 0.02562 * 11 9 8 13 13 C 1.38235 * 120.46215 * 180.02562 * 12 11 9 14 14 C 1.37957 * 120.27486 * 359.97438 * 13 12 11 15 15 C 1.39189 * 120.44952 * 0.02562 * 14 13 12 16 16 S 1.76142 * 131.63576 * 179.97438 * 15 14 13 17 17 C 1.70681 * 90.71445 * 180.02562 * 16 15 14 18 18 N 1.28153 * 111.37878 * 359.97438 * 17 16 15 19 19 C 1.33653 * 118.01816 * 0.02562 * 18 17 16 20 20 N 1.46493 * 109.46943 * 119.99280 * 2 1 3 21 21 C 1.36939 * 120.00452 * 274.99952 * 20 2 1 22 22 H 1.07996 * 119.99803 * 0.02562 * 21 20 2 23 23 C 1.38811 * 119.99778 * 180.02562 * 21 20 2 24 24 N 1.31610 * 120.00550 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99678 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47127 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47039 * 119.99898 * 25 23 21 28 28 H 1.48500 * 109.47090 * 240.00151 * 25 23 21 29 29 H 1.09008 * 109.47415 * 300.00826 * 1 2 3 30 30 H 1.09005 * 109.47181 * 60.00053 * 1 2 3 31 31 H 1.09000 * 109.47423 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47623 * 55.00105 * 4 2 1 33 33 H 1.09002 * 109.46857 * 294.99785 * 4 2 1 34 34 H 1.08994 * 109.47874 * 299.99803 * 7 5 4 35 35 H 1.09005 * 109.47339 * 60.00656 * 7 5 4 36 36 H 1.09006 * 109.47069 * 179.97438 * 7 5 4 37 37 H 0.96996 * 120.00062 * 335.00904 * 8 5 4 38 38 H 1.08001 * 119.77303 * 359.97438 * 12 11 9 39 39 H 1.08002 * 119.86599 * 179.70424 * 13 12 11 40 40 H 1.07998 * 119.78093 * 179.97438 * 14 13 12 41 41 H 1.08001 * 124.31341 * 180.02562 * 17 16 15 42 42 H 0.97009 * 119.99694 * 95.00233 * 20 2 1 43 43 H 0.97000 * 120.00309 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 1 3.9954 -0.9922 -0.3867 7 6 4.0851 -1.4384 -2.4923 8 7 3.9479 0.7893 -1.4925 9 6 5.1611 1.2135 -1.0867 10 8 5.9380 0.4319 -0.5725 11 6 5.5463 2.6249 -1.2662 12 6 4.6593 3.5179 -1.8529 13 6 5.0113 4.8434 -2.0262 14 6 6.2495 5.2935 -1.6168 15 6 7.1577 4.4198 -1.0259 16 16 8.7871 4.6690 -0.4050 17 6 8.8935 3.0237 0.0364 18 7 7.8194 2.3903 -0.2592 19 6 6.8272 3.0729 -0.8386 20 7 2.0183 -0.6904 1.1962 21 6 2.1491 -0.0072 2.3758 22 1 1.8919 1.0405 2.4243 23 6 2.6123 -0.6615 3.5090 24 7 2.9262 -1.9382 3.4498 25 14 2.7914 0.2707 5.1179 26 1 2.3763 1.6829 4.9207 27 1 1.9311 -0.3576 6.1525 28 1 4.2085 0.2279 5.5597 29 1 -0.3634 0.5140 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6054 -0.2619 -2.1369 33 1 1.7516 -1.7715 -1.2055 34 1 3.8001 -2.4820 -2.3593 35 1 3.6546 -1.0595 -3.4193 36 1 5.1714 -1.3611 -2.5386 37 1 3.3283 1.4127 -1.9029 38 1 3.6880 3.1743 -2.1768 39 1 4.3158 5.5286 -2.4879 40 1 6.5163 6.3306 -1.7564 41 1 9.7560 2.5739 0.5058 42 1 2.2490 -1.6317 1.1527 43 1 3.2495 -2.3954 4.2419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134361152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:34 Heat of formation + Delta-G solvation = 35.218324 kcal Electronic energy + Delta-G solvation = -26340.959928 eV Core-core repulsion = 22706.097724 eV Total energy + Delta-G solvation = -3634.862203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.78467 -39.10294 -37.00522 -36.63980 -34.36597 -32.34628 -31.69081 -30.06859 -30.00896 -28.53839 -26.28007 -25.20459 -24.27293 -23.54183 -21.93543 -21.21078 -20.37166 -19.65664 -18.74918 -17.31667 -16.98309 -16.51153 -16.01992 -15.41074 -15.23281 -15.11878 -14.68943 -14.28852 -13.97116 -13.85632 -13.64411 -13.46664 -12.95984 -12.79607 -12.65533 -12.29319 -12.13025 -12.03783 -11.90119 -11.68719 -11.56011 -11.39328 -10.98761 -10.78976 -10.56763 -10.37235 -10.22815 -10.15414 -9.83171 -9.74829 -9.56607 -9.32920 -8.94686 -8.82376 -8.63416 -8.27274 -6.85737 -5.67092 -2.94663 0.09031 0.67643 1.08197 1.53005 2.25929 2.98811 3.41466 3.49306 3.54297 3.56834 3.85554 3.89793 4.39815 4.62515 4.67752 4.77882 4.95231 5.00434 5.16082 5.26593 5.44390 5.50721 5.55355 5.67992 5.74621 5.78425 5.90098 5.94085 5.98482 6.00950 6.05924 6.18163 6.32927 6.34637 6.41957 6.49373 6.61813 6.78089 6.86864 6.99049 7.11714 7.57075 7.78576 7.86935 8.51325 8.64389 9.62834 10.20242 10.54221 11.55829 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010162 B = 0.004029 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.656849 B = 6948.724954 C = 8202.962466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.130 4.130 5 C 0.145 3.855 6 H 0.106 0.894 7 C -0.160 4.160 8 N -0.714 5.714 9 C 0.549 3.451 10 O -0.496 6.496 11 C -0.068 4.068 12 C -0.075 4.075 13 C -0.108 4.108 14 C -0.052 4.052 15 C -0.189 4.189 16 S 0.081 5.919 17 C 0.073 3.927 18 N -0.432 5.432 19 C 0.129 3.871 20 N -0.720 5.720 21 C -0.233 4.233 22 H 0.067 0.933 23 C -0.011 4.011 24 N -0.930 5.930 25 Si 0.900 3.100 26 H -0.282 1.282 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.390 0.610 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.205 0.795 42 H 0.383 0.617 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 14.668 -16.445 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.041 3.959 6 H 0.124 0.876 7 C -0.219 4.219 8 N -0.366 5.366 9 C 0.334 3.666 10 O -0.370 6.370 11 C -0.074 4.074 12 C -0.096 4.096 13 C -0.130 4.130 14 C -0.075 4.075 15 C -0.308 4.308 16 S 0.335 5.665 17 C -0.232 4.232 18 N -0.142 5.142 19 C 0.006 3.994 20 N -0.362 5.362 21 C -0.364 4.364 22 H 0.085 0.915 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.732 3.268 26 H -0.207 1.207 27 H -0.220 1.220 28 H -0.219 1.219 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.225 0.775 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.152 0.848 41 H 0.222 0.778 42 H 0.217 0.783 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.711 14.390 -15.657 22.620 hybrid contribution -0.914 0.134 0.669 1.141 sum 6.797 14.524 -14.988 21.949 Atomic orbital electron populations 1.22462 0.99568 1.00798 0.99710 1.20219 0.91522 0.95536 0.86590 0.93706 1.22171 0.93729 1.02257 0.98765 1.21029 0.95033 0.79845 0.99944 0.87565 1.22182 1.01583 1.00158 0.97961 1.45880 1.16106 1.11730 1.62911 1.17855 0.82536 0.86840 0.79332 1.90886 1.50435 1.55139 1.40540 1.19774 0.91870 0.94926 1.00855 1.21248 0.98723 0.93141 0.96503 1.21049 0.96029 0.95688 1.00221 1.20448 0.92278 0.98626 0.96152 1.23885 0.99688 0.98235 1.09022 1.83906 1.09428 1.13762 1.59395 1.28454 0.99994 0.93516 1.01225 1.65957 0.99538 1.36820 1.11850 1.18797 0.93987 0.87989 0.98594 1.42395 1.77950 1.10557 1.05264 1.19184 1.36252 0.93645 0.87319 0.91529 1.24673 1.02213 0.95926 0.97905 1.69648 1.51022 1.08620 1.28608 0.86213 0.77333 0.78788 0.84464 1.20739 1.21961 1.21935 0.92943 0.94744 0.93528 0.92084 0.90567 0.91718 0.93195 0.92516 0.77502 0.84249 0.84055 0.84838 0.77810 0.78331 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.49 37.16 0.35 -2.54 16 2 C 0.17 3.28 2.84 -67.94 -0.19 3.09 16 3 H 0.04 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -2.01 4.29 -26.73 -0.11 -2.12 16 5 C 0.15 2.44 2.52 -67.93 -0.17 2.27 16 6 H 0.11 2.36 7.05 -51.93 -0.37 1.99 16 7 C -0.16 -2.30 9.48 37.16 0.35 -1.95 16 8 N -0.71 -10.98 4.40 -54.89 -0.24 -11.22 16 9 C 0.55 10.10 7.72 -12.53 -0.10 10.01 16 10 O -0.50 -11.48 15.44 5.27 0.08 -11.40 16 11 C -0.07 -1.05 5.92 -104.39 -0.62 -1.67 16 12 C -0.07 -0.81 9.49 -39.35 -0.37 -1.18 16 13 C -0.11 -0.94 10.02 -39.69 -0.40 -1.33 16 14 C -0.05 -0.50 10.05 -39.33 -0.40 -0.89 16 15 C -0.19 -2.36 6.55 -38.59 -0.25 -2.61 16 16 S 0.08 0.83 23.18 -107.50 -2.49 -1.67 16 17 C 0.07 0.90 12.12 51.23 0.62 1.52 16 18 N -0.43 -7.39 9.43 -12.74 -0.12 -7.51 16 19 C 0.13 2.08 6.73 -84.89 -0.57 1.50 16 20 N -0.72 -18.02 4.49 -53.43 -0.24 -18.26 16 21 C -0.23 -6.61 9.93 -15.06 -0.15 -6.76 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -29.06 13.06 55.49 0.72 -28.34 16 25 Si 0.90 23.53 29.55 -169.99 -5.02 18.51 16 26 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 28 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 29 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.39 4.61 6.60 -40.82 -0.27 4.34 16 38 H 0.14 1.10 6.34 -52.49 -0.33 0.77 16 39 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.21 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 43 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -37.35 374.32 -9.65 -47.00 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -5.88 Total: 10.35 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -2.10 Total: -3.11 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: 0.12 Total: -65.32 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.02 Total: 18.51 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.49 Total: -1.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.35 -9.65 -47.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134361152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.213 kcal (2) G-P(sol) polarization free energy of solvation -37.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds