Wall clock time and date at job start Tue Mar 31 2020 18:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46721 * 2 1 4 4 C 1.52997 * 109.46875 * 239.99865 * 2 1 3 5 5 C 1.53005 * 109.46635 * 174.99953 * 4 2 1 6 6 H 1.09000 * 109.47068 * 55.00166 * 5 4 2 7 7 C 1.52999 * 109.46590 * 174.99552 * 5 4 2 8 8 N 1.46495 * 109.47135 * 294.99370 * 5 4 2 9 9 C 1.34776 * 119.99654 * 154.99838 * 8 5 4 10 10 O 1.21613 * 120.00376 * 0.02562 * 9 8 5 11 11 C 1.47395 * 119.99857 * 180.02562 * 9 8 5 12 12 C 1.38868 * 120.01719 * 0.02562 * 11 9 8 13 13 C 1.38235 * 120.46215 * 180.02562 * 12 11 9 14 14 C 1.37957 * 120.27486 * 359.97438 * 13 12 11 15 15 C 1.39189 * 120.44952 * 0.02562 * 14 13 12 16 16 S 1.76142 * 131.63576 * 179.97438 * 15 14 13 17 17 C 1.70681 * 90.71445 * 180.02562 * 16 15 14 18 18 N 1.28153 * 111.37878 * 359.97438 * 17 16 15 19 19 C 1.33653 * 118.01816 * 0.02562 * 18 17 16 20 20 N 1.46493 * 109.46943 * 119.99280 * 2 1 3 21 21 C 1.36939 * 120.00452 * 274.99952 * 20 2 1 22 22 H 1.07996 * 119.99803 * 0.02562 * 21 20 2 23 23 C 1.38811 * 119.99778 * 180.02562 * 21 20 2 24 24 N 1.31610 * 120.00550 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99678 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47127 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47039 * 119.99898 * 25 23 21 28 28 H 1.48500 * 109.47090 * 240.00151 * 25 23 21 29 29 H 1.09008 * 109.47415 * 300.00826 * 1 2 3 30 30 H 1.09005 * 109.47181 * 60.00053 * 1 2 3 31 31 H 1.09000 * 109.47423 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47623 * 55.00105 * 4 2 1 33 33 H 1.09002 * 109.46857 * 294.99785 * 4 2 1 34 34 H 1.08994 * 109.47874 * 299.99803 * 7 5 4 35 35 H 1.09005 * 109.47339 * 60.00656 * 7 5 4 36 36 H 1.09006 * 109.47069 * 179.97438 * 7 5 4 37 37 H 0.96996 * 120.00062 * 335.00904 * 8 5 4 38 38 H 1.08001 * 119.77303 * 359.97438 * 12 11 9 39 39 H 1.08002 * 119.86599 * 179.70424 * 13 12 11 40 40 H 1.07998 * 119.78093 * 179.97438 * 14 13 12 41 41 H 1.08001 * 124.31341 * 180.02562 * 17 16 15 42 42 H 0.97009 * 119.99694 * 95.00233 * 20 2 1 43 43 H 0.97000 * 120.00309 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 1 3.9954 -0.9922 -0.3867 7 6 4.0851 -1.4384 -2.4923 8 7 3.9479 0.7893 -1.4925 9 6 5.1611 1.2135 -1.0867 10 8 5.9380 0.4319 -0.5725 11 6 5.5463 2.6249 -1.2662 12 6 4.6593 3.5179 -1.8529 13 6 5.0113 4.8434 -2.0262 14 6 6.2495 5.2935 -1.6168 15 6 7.1577 4.4198 -1.0259 16 16 8.7871 4.6690 -0.4050 17 6 8.8935 3.0237 0.0364 18 7 7.8194 2.3903 -0.2592 19 6 6.8272 3.0729 -0.8386 20 7 2.0183 -0.6904 1.1962 21 6 2.1491 -0.0072 2.3758 22 1 1.8919 1.0405 2.4243 23 6 2.6123 -0.6615 3.5090 24 7 2.9262 -1.9382 3.4498 25 14 2.7914 0.2707 5.1179 26 1 2.3763 1.6829 4.9207 27 1 1.9311 -0.3576 6.1525 28 1 4.2085 0.2279 5.5597 29 1 -0.3634 0.5140 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6054 -0.2619 -2.1369 33 1 1.7516 -1.7715 -1.2055 34 1 3.8001 -2.4820 -2.3593 35 1 3.6546 -1.0595 -3.4193 36 1 5.1714 -1.3611 -2.5386 37 1 3.3283 1.4127 -1.9029 38 1 3.6880 3.1743 -2.1768 39 1 4.3158 5.5286 -2.4879 40 1 6.5163 6.3306 -1.7564 41 1 9.7560 2.5739 0.5058 42 1 2.2490 -1.6317 1.1527 43 1 3.2495 -2.3954 4.2419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134361152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:33 Heat of formation + Delta-G solvation = 8.079277 kcal Electronic energy + Delta-G solvation = -26342.136765 eV Core-core repulsion = 22706.097724 eV Total energy + Delta-G solvation = -3636.039041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78307 -40.36904 -38.25855 -37.82678 -36.03283 -34.07585 -33.02098 -31.23647 -30.92993 -30.38301 -27.59450 -26.13376 -25.69595 -25.20674 -23.02048 -22.22702 -21.73350 -21.16622 -19.81653 -19.22499 -18.15985 -17.48561 -17.19257 -16.69619 -16.46282 -16.23673 -15.95569 -15.64557 -15.58711 -15.39214 -14.97768 -14.61378 -14.46140 -14.24579 -13.64732 -13.56199 -13.35610 -13.19325 -13.10071 -12.96262 -12.89870 -12.80714 -12.67668 -12.27407 -12.21883 -12.17638 -11.82624 -11.56401 -11.41490 -11.15311 -10.97562 -10.91851 -10.44388 -9.99410 -9.79658 -9.14055 -8.95389 -7.93997 -5.18670 -0.82922 -0.17649 0.27027 0.62457 1.37506 1.38790 1.40745 1.48222 1.85820 2.21627 2.53601 2.78958 3.05258 3.40900 3.52836 3.81142 3.84147 3.95588 4.02070 4.14146 4.18256 4.20448 4.40999 4.49926 4.54659 4.61784 4.69871 4.79570 4.83394 4.95221 5.00821 5.05360 5.06145 5.11701 5.19996 5.24248 5.35226 5.43261 5.50443 5.61822 5.64995 5.68366 6.29816 6.61472 6.72292 7.35173 7.38483 8.16772 8.35178 9.30270 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010162 B = 0.004029 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.656849 B = 6948.724954 C = 8202.962466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 H 0.043 0.957 4 C -0.116 4.116 5 C 0.148 3.852 6 H 0.041 0.959 7 C -0.150 4.150 8 N -0.698 5.698 9 C 0.541 3.459 10 O -0.565 6.565 11 C -0.117 4.117 12 C -0.058 4.058 13 C -0.098 4.098 14 C -0.042 4.042 15 C -0.213 4.213 16 S 0.152 5.848 17 C 0.058 3.942 18 N -0.501 5.501 19 C 0.092 3.908 20 N -0.733 5.733 21 C -0.222 4.222 22 H 0.070 0.930 23 C -0.080 4.080 24 N -0.969 5.969 25 Si 0.958 3.042 26 H -0.266 1.266 27 H -0.288 1.288 28 H -0.305 1.305 29 H 0.029 0.971 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.411 0.589 38 H 0.169 0.831 39 H 0.191 0.809 40 H 0.172 0.828 41 H 0.227 0.773 42 H 0.369 0.631 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.589 18.657 -19.138 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.061 0.939 4 C -0.155 4.155 5 C 0.043 3.957 6 H 0.059 0.941 7 C -0.208 4.208 8 N -0.352 5.352 9 C 0.329 3.671 10 O -0.443 6.443 11 C -0.123 4.123 12 C -0.079 4.079 13 C -0.119 4.119 14 C -0.064 4.064 15 C -0.332 4.332 16 S 0.407 5.593 17 C -0.245 4.245 18 N -0.213 5.213 19 C -0.031 4.031 20 N -0.373 5.373 21 C -0.355 4.355 22 H 0.088 0.912 23 C -0.272 4.272 24 N -0.621 5.621 25 Si 0.788 3.212 26 H -0.190 1.190 27 H -0.215 1.215 28 H -0.233 1.233 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.049 0.951 37 H 0.249 0.751 38 H 0.186 0.814 39 H 0.208 0.792 40 H 0.190 0.810 41 H 0.243 0.757 42 H 0.201 0.799 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.849 18.457 -18.410 26.717 hybrid contribution -0.332 -0.945 1.389 1.713 sum 5.517 17.512 -17.021 25.037 Atomic orbital electron populations 1.22297 0.97404 1.00900 1.00862 1.20547 0.92818 0.95235 0.85922 0.93928 1.22083 0.92271 1.02374 0.98724 1.20824 0.95878 0.80843 0.98150 0.94054 1.22072 1.00032 1.00320 0.98366 1.45710 1.15711 1.11580 1.62158 1.18521 0.82432 0.88068 0.78089 1.90835 1.52458 1.57220 1.43816 1.19779 0.93543 0.93889 1.05092 1.21668 0.98675 0.93535 0.94041 1.21623 0.96366 0.95137 0.98801 1.21064 0.91782 0.99834 0.93725 1.24311 1.01535 0.97483 1.09896 1.83477 1.07517 1.10709 1.57624 1.28902 0.99664 0.95424 1.00498 1.65959 1.01371 1.39604 1.14401 1.19129 0.94372 0.89743 0.99861 1.42628 1.78198 1.10091 1.06357 1.19535 1.33709 0.93743 0.88471 0.91243 1.25421 1.03659 0.96860 1.01211 1.69800 1.53240 1.10133 1.28914 0.85282 0.76380 0.78507 0.81007 1.19011 1.21525 1.23279 0.95215 0.90095 0.93973 0.86981 0.90525 0.91122 0.89537 0.95053 0.75125 0.81387 0.79155 0.81013 0.75691 0.79926 0.94458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.49 71.98 0.68 -4.33 16 2 C 0.16 6.03 2.84 44.99 0.13 6.16 16 3 H 0.04 1.60 7.56 -2.39 -0.02 1.58 16 4 C -0.12 -3.35 4.29 30.59 0.13 -3.22 16 5 C 0.15 5.04 2.52 44.99 0.11 5.15 16 6 H 0.04 1.98 7.05 -2.39 -0.02 1.97 16 7 C -0.15 -4.27 9.48 71.98 0.68 -3.58 16 8 N -0.70 -21.47 4.40 -445.83 -1.96 -23.43 16 9 C 0.54 21.08 7.72 86.65 0.67 21.75 16 10 O -0.56 -28.81 15.44 -4.07 -0.06 -28.87 16 11 C -0.12 -3.67 5.92 -19.71 -0.12 -3.78 16 12 C -0.06 -1.10 9.49 22.42 0.21 -0.89 16 13 C -0.10 -1.23 10.02 22.20 0.22 -1.01 16 14 C -0.04 -0.63 10.05 22.43 0.23 -0.41 16 15 C -0.21 -5.04 6.55 22.91 0.15 -4.89 16 16 S 0.15 2.89 23.18 -56.49 -1.31 1.58 16 17 C 0.06 1.50 12.12 130.78 1.58 3.08 16 18 N -0.50 -18.49 9.43 -194.19 -1.83 -20.32 16 19 C 0.09 3.05 6.73 40.28 0.27 3.32 16 20 N -0.73 -37.61 4.49 -322.96 -1.45 -39.06 16 21 C -0.22 -12.92 9.93 84.03 0.83 -12.08 16 22 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 23 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 24 N -0.97 -63.37 13.06 21.65 0.28 -63.09 16 25 Si 0.96 49.83 29.55 68.60 2.03 51.86 16 26 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 27 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 28 H -0.30 -16.33 7.11 99.48 0.71 -15.63 16 29 H 0.03 1.07 8.14 -2.38 -0.02 1.06 16 30 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.41 8.72 6.60 -92.71 -0.61 8.11 16 38 H 0.17 1.97 6.34 -2.91 -0.02 1.95 16 39 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 40 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 41 H 0.23 4.15 8.06 -2.91 -0.02 4.13 16 42 H 0.37 20.77 7.80 -92.70 -0.72 20.04 16 43 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -92.15 374.32 1.67 -90.48 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.29 Total: 30.00 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 6.26 Total: 0.85 kcal Atomic # 7 Polarization: -140.94 SS G_CDS: -4.96 Total: -145.90 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.06 Total: -28.87 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.03 Total: 51.86 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.31 Total: 1.58 kcal Total: -92.15 1.67 -90.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134361152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.560 kcal (2) G-P(sol) polarization free energy of solvation -92.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds