Wall clock time and date at job start Tue Mar 31 2020 18:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47588 * 2 1 4 4 C 1.53001 * 109.47317 * 239.99704 * 2 1 3 5 5 C 1.52998 * 109.47065 * 175.00415 * 4 2 1 6 6 H 1.08993 * 109.47254 * 304.99825 * 5 4 2 7 7 C 1.53008 * 109.47097 * 185.00167 * 5 4 2 8 8 N 1.46499 * 109.47247 * 65.00439 * 5 4 2 9 9 C 1.34780 * 119.99513 * 205.00000 * 8 5 4 10 10 O 1.21608 * 120.00494 * 359.97438 * 9 8 5 11 11 C 1.47391 * 119.99468 * 179.97438 * 9 8 5 12 12 C 1.38872 * 120.02046 * 359.97438 * 11 9 8 13 13 C 1.38239 * 120.45931 * 180.02562 * 12 11 9 14 14 C 1.37952 * 120.27598 * 359.95636 * 13 12 11 15 15 C 1.39183 * 120.45403 * 0.03967 * 14 13 12 16 16 S 1.76145 * 131.64012 * 180.02562 * 15 14 13 17 17 C 1.70680 * 90.71322 * 179.97438 * 16 15 14 18 18 N 1.28146 * 111.37623 * 0.02562 * 17 16 15 19 19 C 1.33644 * 118.02409 * 359.97438 * 18 17 16 20 20 N 1.46506 * 109.46769 * 120.00345 * 2 1 3 21 21 C 1.36941 * 119.99309 * 274.99627 * 20 2 1 22 22 H 1.07999 * 120.00328 * 0.02562 * 21 20 2 23 23 C 1.38819 * 119.99511 * 180.02562 * 21 20 2 24 24 N 1.31616 * 120.00294 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99726 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47354 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47079 * 119.99895 * 25 23 21 28 28 H 1.48500 * 109.46993 * 240.00068 * 25 23 21 29 29 H 1.09002 * 109.46634 * 60.00322 * 1 2 3 30 30 H 1.09002 * 109.47264 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47455 * 300.00206 * 1 2 3 32 32 H 1.08999 * 109.46977 * 55.00419 * 4 2 1 33 33 H 1.09003 * 109.47204 * 295.00105 * 4 2 1 34 34 H 1.09006 * 109.46946 * 299.99926 * 7 5 4 35 35 H 1.08997 * 109.46841 * 59.99815 * 7 5 4 36 36 H 1.09001 * 109.47286 * 179.97438 * 7 5 4 37 37 H 0.96992 * 120.00069 * 24.99490 * 8 5 4 38 38 H 1.07999 * 119.77394 * 0.02562 * 12 11 9 39 39 H 1.08002 * 119.86245 * 179.97438 * 13 12 11 40 40 H 1.08000 * 119.77198 * 180.02562 * 14 13 12 41 41 H 1.08001 * 124.30810 * 180.02562 * 17 16 15 42 42 H 0.96999 * 120.00460 * 95.00089 * 20 2 1 43 43 H 0.96997 * 120.00377 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3135 6 1 3.8571 0.4356 -1.2677 7 6 4.0646 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3747 -0.9912 0.2735 10 8 5.9880 -0.0835 -0.2546 11 6 5.9668 -1.7162 1.4120 12 6 5.2667 -2.7525 2.0157 13 6 5.8132 -3.4382 3.0844 14 6 7.0623 -3.1000 3.5623 15 6 7.7857 -2.0656 2.9759 16 16 9.3747 -1.3970 3.3375 17 6 9.2123 -0.2683 2.0676 18 7 8.0897 -0.4022 1.4644 19 6 7.2558 -1.3542 1.8937 20 7 2.0183 -0.6907 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4243 23 6 2.6122 -0.6618 3.5091 24 7 2.9251 -1.9389 3.4501 25 14 2.7899 0.2699 5.1183 26 1 2.3751 1.6821 4.9211 27 1 1.9296 -0.3594 6.1523 28 1 4.2068 0.2279 5.5607 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6055 -0.2618 -2.1369 33 1 1.7517 -1.7716 -1.2055 34 1 3.7723 -2.2743 -2.6698 35 1 3.6265 -0.6888 -3.4656 36 1 5.1509 -1.1479 -2.6700 37 1 3.6647 -2.0585 0.2387 38 1 4.2885 -3.0246 1.6477 39 1 5.2600 -4.2423 3.5469 40 1 7.4816 -3.6414 4.3975 41 1 9.9604 0.4654 1.8059 42 1 2.2490 -1.6319 1.1527 43 1 3.2491 -2.3960 4.2419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134361153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:38 Heat of formation + Delta-G solvation = 41.834029 kcal Electronic energy + Delta-G solvation = -27500.099112 eV Core-core repulsion = 23865.523787 eV Total energy + Delta-G solvation = -3634.575325 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.24141 -38.81574 -36.68305 -36.32490 -34.11720 -32.38963 -31.33821 -29.83380 -29.45449 -28.49507 -26.32316 -24.71167 -23.75733 -23.64291 -21.49958 -20.79345 -20.19279 -19.75911 -18.16905 -17.22877 -16.64761 -15.96989 -15.74666 -15.09403 -14.75911 -14.66879 -14.59567 -14.04313 -13.79786 -13.72562 -13.41816 -13.08189 -12.84569 -12.69501 -12.19536 -12.12735 -11.90230 -11.73528 -11.65075 -11.55791 -11.41125 -11.01425 -10.88254 -10.85104 -10.72241 -10.33831 -10.24768 -9.91463 -9.73649 -9.67111 -9.37565 -9.00288 -8.93029 -8.33848 -8.25883 -7.71921 -6.96291 -5.88104 -3.08427 0.62700 1.38915 1.55301 1.97362 2.81845 3.39563 3.46946 3.48770 3.49451 3.85895 4.34442 4.46092 4.55585 4.95281 5.12657 5.33277 5.38407 5.43660 5.48660 5.54639 5.58904 5.63120 5.71312 5.88020 5.96309 5.98848 6.02949 6.12470 6.17571 6.24561 6.38646 6.40245 6.46964 6.56422 6.60065 6.62174 6.81753 6.84786 7.04144 7.09320 7.26000 7.66272 8.00467 8.28535 8.34268 9.05165 9.45283 9.97546 10.33694 11.34615 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010812 B = 0.005627 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.082945 B = 4974.739614 C = 6551.720662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.048 0.952 4 C -0.133 4.133 5 C 0.152 3.848 6 H 0.083 0.917 7 C -0.162 4.162 8 N -0.697 5.697 9 C 0.566 3.434 10 O -0.534 6.534 11 C -0.085 4.085 12 C -0.006 4.006 13 C -0.092 4.092 14 C -0.065 4.065 15 C -0.191 4.191 16 S 0.054 5.946 17 C 0.058 3.942 18 N -0.431 5.431 19 C 0.124 3.876 20 N -0.714 5.714 21 C -0.216 4.216 22 H 0.067 0.933 23 C -0.010 4.010 24 N -0.926 5.926 25 Si 0.898 3.102 26 H -0.284 1.284 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.401 0.599 38 H 0.149 0.851 39 H 0.137 0.863 40 H 0.125 0.875 41 H 0.198 0.802 42 H 0.376 0.624 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.406 -4.687 -5.015 9.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 H 0.066 0.934 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.101 0.899 7 C -0.220 4.220 8 N -0.351 5.351 9 C 0.353 3.647 10 O -0.411 6.411 11 C -0.092 4.092 12 C -0.028 4.028 13 C -0.113 4.113 14 C -0.088 4.088 15 C -0.310 4.310 16 S 0.306 5.694 17 C -0.247 4.247 18 N -0.141 5.141 19 C 0.003 3.997 20 N -0.357 5.357 21 C -0.347 4.347 22 H 0.085 0.915 23 C -0.205 4.205 24 N -0.575 5.575 25 Si 0.730 3.270 26 H -0.209 1.209 27 H -0.221 1.221 28 H -0.220 1.220 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.239 0.761 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.143 0.857 41 H 0.215 0.785 42 H 0.211 0.789 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.503 -3.645 -5.040 9.746 hybrid contribution -0.949 -0.089 1.146 1.491 sum 6.554 -3.734 -3.894 8.489 Atomic orbital electron populations 1.22405 0.99207 1.00711 0.99942 1.20305 0.91677 0.95815 0.86361 0.93362 1.22209 0.94092 1.01540 0.99338 1.20773 0.92316 0.97355 0.84899 0.89924 1.22208 1.01870 1.00714 0.97246 1.45881 1.17722 1.37738 1.33785 1.17791 0.81292 0.83142 0.82439 1.90757 1.61682 1.29910 1.58796 1.19502 0.92058 0.98752 0.98934 1.21284 0.97261 0.91296 0.92970 1.21023 0.93705 1.00317 0.96241 1.20368 0.94527 0.94982 0.98939 1.23631 0.99066 1.04964 1.03309 1.83665 1.15300 1.32811 1.37596 1.28199 0.98106 1.02516 0.95922 1.65893 1.01969 1.18104 1.28152 1.18730 0.94950 0.92403 0.93655 1.42465 1.77714 1.10071 1.05445 1.19283 1.34505 0.93801 0.87122 0.91465 1.24468 1.02515 0.96069 0.97485 1.69498 1.51201 1.08297 1.28526 0.86231 0.77262 0.79010 0.84496 1.20903 1.22061 1.22046 0.94557 0.93592 0.92901 0.90796 0.91768 0.92866 0.92213 0.92363 0.76105 0.83335 0.84547 0.85705 0.78528 0.78863 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.49 37.16 0.35 -2.36 16 2 C 0.17 3.06 2.89 -67.93 -0.20 2.87 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.97 4.43 -26.73 -0.12 -2.09 16 5 C 0.15 2.49 2.57 -67.93 -0.17 2.31 16 6 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 7 C -0.16 -2.25 9.48 37.16 0.35 -1.89 16 8 N -0.70 -12.82 3.75 -54.89 -0.21 -13.03 16 9 C 0.57 12.16 7.72 -12.53 -0.10 12.07 16 10 O -0.53 -12.92 15.44 5.27 0.08 -12.84 16 11 C -0.09 -1.77 5.92 -104.38 -0.62 -2.39 16 12 C -0.01 -0.11 7.80 -39.35 -0.31 -0.42 16 13 C -0.09 -1.49 10.02 -39.69 -0.40 -1.89 16 14 C -0.06 -1.03 10.05 -39.34 -0.40 -1.42 16 15 C -0.19 -3.37 6.55 -38.60 -0.25 -3.62 16 16 S 0.05 0.77 23.18 -107.50 -2.49 -1.72 16 17 C 0.06 0.88 12.12 51.22 0.62 1.50 16 18 N -0.43 -8.68 9.43 -12.74 -0.12 -8.80 16 19 C 0.12 2.55 6.73 -84.89 -0.57 1.98 16 20 N -0.71 -15.51 3.84 -53.42 -0.21 -15.72 16 21 C -0.22 -5.49 9.93 -15.05 -0.15 -5.64 16 22 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -22.84 10.73 55.49 0.60 -22.24 16 25 Si 0.90 21.91 29.55 -169.99 -5.02 16.88 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.40 7.15 4.50 -40.82 -0.18 6.97 16 38 H 0.15 2.71 5.79 -52.49 -0.30 2.41 16 39 H 0.14 1.89 8.06 -52.49 -0.42 1.46 16 40 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.20 2.17 8.06 -52.49 -0.42 1.75 16 42 H 0.38 8.19 5.70 -40.82 -0.23 7.95 16 43 H 0.25 6.23 8.31 -40.82 -0.34 5.89 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -30.43 365.55 -9.64 -40.07 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -5.73 Total: 13.23 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.05 Total: -1.34 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.06 Total: -59.79 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.49 Total: -1.72 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.43 -9.64 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134361153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.907 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds