Wall clock time and date at job start Tue Mar 31 2020 18:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47588 * 2 1 4 4 C 1.53001 * 109.47317 * 239.99704 * 2 1 3 5 5 C 1.52998 * 109.47065 * 175.00415 * 4 2 1 6 6 H 1.08993 * 109.47254 * 304.99825 * 5 4 2 7 7 C 1.53008 * 109.47097 * 185.00167 * 5 4 2 8 8 N 1.46499 * 109.47247 * 65.00439 * 5 4 2 9 9 C 1.34780 * 119.99513 * 205.00000 * 8 5 4 10 10 O 1.21608 * 120.00494 * 359.97438 * 9 8 5 11 11 C 1.47391 * 119.99468 * 179.97438 * 9 8 5 12 12 C 1.38872 * 120.02046 * 359.97438 * 11 9 8 13 13 C 1.38239 * 120.45931 * 180.02562 * 12 11 9 14 14 C 1.37952 * 120.27598 * 359.95636 * 13 12 11 15 15 C 1.39183 * 120.45403 * 0.03967 * 14 13 12 16 16 S 1.76145 * 131.64012 * 180.02562 * 15 14 13 17 17 C 1.70680 * 90.71322 * 179.97438 * 16 15 14 18 18 N 1.28146 * 111.37623 * 0.02562 * 17 16 15 19 19 C 1.33644 * 118.02409 * 359.97438 * 18 17 16 20 20 N 1.46506 * 109.46769 * 120.00345 * 2 1 3 21 21 C 1.36941 * 119.99309 * 274.99627 * 20 2 1 22 22 H 1.07999 * 120.00328 * 0.02562 * 21 20 2 23 23 C 1.38819 * 119.99511 * 180.02562 * 21 20 2 24 24 N 1.31616 * 120.00294 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99726 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47354 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47079 * 119.99895 * 25 23 21 28 28 H 1.48500 * 109.46993 * 240.00068 * 25 23 21 29 29 H 1.09002 * 109.46634 * 60.00322 * 1 2 3 30 30 H 1.09002 * 109.47264 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47455 * 300.00206 * 1 2 3 32 32 H 1.08999 * 109.46977 * 55.00419 * 4 2 1 33 33 H 1.09003 * 109.47204 * 295.00105 * 4 2 1 34 34 H 1.09006 * 109.46946 * 299.99926 * 7 5 4 35 35 H 1.08997 * 109.46841 * 59.99815 * 7 5 4 36 36 H 1.09001 * 109.47286 * 179.97438 * 7 5 4 37 37 H 0.96992 * 120.00069 * 24.99490 * 8 5 4 38 38 H 1.07999 * 119.77394 * 0.02562 * 12 11 9 39 39 H 1.08002 * 119.86245 * 179.97438 * 13 12 11 40 40 H 1.08000 * 119.77198 * 180.02562 * 14 13 12 41 41 H 1.08001 * 124.30810 * 180.02562 * 17 16 15 42 42 H 0.96999 * 120.00460 * 95.00089 * 20 2 1 43 43 H 0.96997 * 120.00377 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3135 6 1 3.8571 0.4356 -1.2677 7 6 4.0646 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3747 -0.9912 0.2735 10 8 5.9880 -0.0835 -0.2546 11 6 5.9668 -1.7162 1.4120 12 6 5.2667 -2.7525 2.0157 13 6 5.8132 -3.4382 3.0844 14 6 7.0623 -3.1000 3.5623 15 6 7.7857 -2.0656 2.9759 16 16 9.3747 -1.3970 3.3375 17 6 9.2123 -0.2683 2.0676 18 7 8.0897 -0.4022 1.4644 19 6 7.2558 -1.3542 1.8937 20 7 2.0183 -0.6907 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4243 23 6 2.6122 -0.6618 3.5091 24 7 2.9251 -1.9389 3.4501 25 14 2.7899 0.2699 5.1183 26 1 2.3751 1.6821 4.9211 27 1 1.9296 -0.3594 6.1523 28 1 4.2068 0.2279 5.5607 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6055 -0.2618 -2.1369 33 1 1.7517 -1.7716 -1.2055 34 1 3.7723 -2.2743 -2.6698 35 1 3.6265 -0.6888 -3.4656 36 1 5.1509 -1.1479 -2.6700 37 1 3.6647 -2.0585 0.2387 38 1 4.2885 -3.0246 1.6477 39 1 5.2600 -4.2423 3.5469 40 1 7.4816 -3.6414 4.3975 41 1 9.9604 0.4654 1.8059 42 1 2.2490 -1.6319 1.1527 43 1 3.2491 -2.3960 4.2419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134361153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:37 Heat of formation + Delta-G solvation = 23.551001 kcal Electronic energy + Delta-G solvation = -27500.891924 eV Core-core repulsion = 23865.523787 eV Total energy + Delta-G solvation = -3635.368136 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.62370 -40.27369 -38.19817 -37.68412 -35.72703 -34.06234 -32.82626 -31.27876 -30.77047 -30.08486 -27.58957 -25.98943 -25.55474 -25.05987 -22.84953 -22.16299 -21.63502 -21.23516 -19.51559 -19.08366 -18.02812 -17.36560 -17.09098 -16.68389 -16.28169 -16.09058 -15.91490 -15.60854 -15.45097 -15.23060 -14.85555 -14.48159 -14.25562 -14.17035 -13.58553 -13.47444 -13.31190 -13.15531 -12.92719 -12.90528 -12.80408 -12.70831 -12.60088 -12.27975 -12.15477 -12.11711 -11.69608 -11.58773 -11.39680 -11.01822 -10.84620 -10.80528 -10.36023 -9.82069 -9.62331 -9.00904 -8.72907 -7.82544 -5.00588 -0.68363 0.04602 0.35023 0.71886 1.40818 1.46747 1.49413 1.51504 2.00275 2.43763 2.60420 2.98082 3.16828 3.51723 3.65026 3.83534 4.02311 4.05090 4.17296 4.19804 4.30100 4.35351 4.40169 4.58114 4.66204 4.69106 4.80995 4.84738 4.88654 4.93593 5.08685 5.11916 5.15648 5.18604 5.26482 5.37208 5.43674 5.47990 5.63293 5.65520 5.77759 5.83537 6.42870 6.70964 6.81597 7.49221 7.51624 8.19353 8.49277 9.38601 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010812 B = 0.005627 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.082945 B = 4974.739614 C = 6551.720662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.161 3.839 3 H 0.023 0.977 4 C -0.118 4.118 5 C 0.146 3.854 6 H 0.050 0.950 7 C -0.150 4.150 8 N -0.688 5.688 9 C 0.557 3.443 10 O -0.575 6.575 11 C -0.124 4.124 12 C -0.003 4.003 13 C -0.101 4.101 14 C -0.053 4.053 15 C -0.221 4.221 16 S 0.135 5.865 17 C 0.059 3.941 18 N -0.490 5.490 19 C 0.096 3.904 20 N -0.716 5.716 21 C -0.228 4.228 22 H 0.047 0.953 23 C -0.039 4.039 24 N -0.921 5.921 25 Si 0.930 3.070 26 H -0.292 1.292 27 H -0.290 1.290 28 H -0.307 1.307 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.027 0.973 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.033 0.967 37 H 0.403 0.597 38 H 0.145 0.855 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.235 0.765 42 H 0.376 0.624 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.813 -6.209 -4.974 10.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.053 3.947 3 H 0.041 0.959 4 C -0.156 4.156 5 C 0.042 3.958 6 H 0.068 0.932 7 C -0.209 4.209 8 N -0.340 5.340 9 C 0.345 3.655 10 O -0.456 6.456 11 C -0.131 4.131 12 C -0.024 4.024 13 C -0.122 4.122 14 C -0.076 4.076 15 C -0.340 4.340 16 S 0.388 5.612 17 C -0.244 4.244 18 N -0.202 5.202 19 C -0.025 4.025 20 N -0.359 5.359 21 C -0.360 4.360 22 H 0.065 0.935 23 C -0.234 4.234 24 N -0.570 5.570 25 Si 0.764 3.236 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.236 1.236 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.052 0.948 37 H 0.242 0.758 38 H 0.162 0.838 39 H 0.180 0.820 40 H 0.180 0.820 41 H 0.251 0.749 42 H 0.211 0.789 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.896 -5.192 -5.011 10.697 hybrid contribution -0.917 0.417 1.174 1.546 sum 6.979 -4.776 -3.837 9.287 Atomic orbital electron populations 1.22246 0.97428 1.01168 1.00300 1.20483 0.92856 0.94709 0.86679 0.95898 1.22125 0.92444 1.02327 0.98736 1.20932 0.93581 0.95694 0.85589 0.93159 1.22098 1.00330 1.02012 0.96419 1.45900 1.16818 1.37397 1.33923 1.18152 0.81849 0.82813 0.82648 1.90705 1.62878 1.31776 1.60267 1.19680 0.93301 1.00268 0.99838 1.21316 0.96927 0.90831 0.93364 1.21342 0.94335 1.00805 0.95693 1.20834 0.93933 0.93885 0.98907 1.24117 1.01348 1.05457 1.03046 1.83297 1.11953 1.30557 1.35415 1.28928 0.97340 1.02731 0.95423 1.65921 1.03802 1.19791 1.30677 1.19020 0.95330 0.93316 0.94861 1.42434 1.78089 1.09920 1.05477 1.19220 1.34900 0.93182 0.88736 0.93500 1.24780 1.03314 0.96895 0.98414 1.69521 1.51304 1.07789 1.28410 0.85740 0.76099 0.78177 0.83603 1.21792 1.21749 1.23562 0.91407 0.92978 0.95341 0.87326 0.90104 0.91008 0.89494 0.94787 0.75792 0.83776 0.81961 0.82005 0.74890 0.78902 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.85 9.49 71.98 0.68 -4.17 16 2 C 0.16 5.84 2.89 44.99 0.13 5.97 16 3 H 0.02 0.94 8.08 -2.39 -0.02 0.92 16 4 C -0.12 -3.28 4.43 30.59 0.14 -3.15 16 5 C 0.15 4.83 2.57 44.99 0.12 4.94 16 6 H 0.05 1.99 7.58 -2.39 -0.02 1.97 16 7 C -0.15 -4.01 9.48 71.98 0.68 -3.33 16 8 N -0.69 -26.03 3.75 -445.83 -1.67 -27.70 16 9 C 0.56 25.17 7.72 86.65 0.67 25.84 16 10 O -0.58 -29.59 15.44 -4.06 -0.06 -29.65 16 11 C -0.12 -5.32 5.92 -19.71 -0.12 -5.43 16 12 C 0.00 -0.10 7.80 22.42 0.17 0.07 16 13 C -0.10 -3.14 10.02 22.20 0.22 -2.92 16 14 C -0.05 -1.57 10.05 22.43 0.23 -1.34 16 15 C -0.22 -7.53 6.55 22.91 0.15 -7.38 16 16 S 0.13 3.47 23.18 -56.49 -1.31 2.16 16 17 C 0.06 1.75 12.12 130.78 1.58 3.33 16 18 N -0.49 -20.10 9.43 -194.19 -1.83 -21.93 16 19 C 0.10 4.03 6.73 40.28 0.27 4.31 16 20 N -0.72 -31.50 3.84 -322.92 -1.24 -32.75 16 21 C -0.23 -11.89 9.93 84.03 0.83 -11.05 16 22 H 0.05 2.59 7.83 -2.91 -0.02 2.56 16 23 C -0.04 -2.03 5.50 84.86 0.47 -1.56 16 24 N -0.92 -45.34 10.73 21.65 0.23 -45.11 16 25 Si 0.93 45.49 29.55 68.60 2.03 47.52 16 26 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 28 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.40 14.63 4.50 -92.71 -0.42 14.22 16 38 H 0.14 5.33 5.79 -2.91 -0.02 5.31 16 39 H 0.16 4.12 8.06 -2.91 -0.02 4.09 16 40 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.24 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.38 16.40 5.70 -92.71 -0.53 15.88 16 43 H 0.25 12.26 8.31 -92.71 -0.77 11.49 16 Total: -1.00 -70.13 365.55 2.48 -67.65 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: 0.10 Total: 35.69 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 6.23 Total: 4.12 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -4.51 Total: -127.49 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.06 Total: -29.65 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.31 Total: 2.16 kcal Total: -70.13 2.48 -67.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134361153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.205 kcal (2) G-P(sol) polarization free energy of solvation -70.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds