Wall clock time and date at job start Tue Mar 31 2020 18:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47031 * 2 1 4 4 C 1.53001 * 109.47107 * 120.00631 * 2 1 3 5 5 C 1.52999 * 109.47189 * 185.00022 * 4 2 1 6 6 H 1.09004 * 109.47108 * 304.99795 * 5 4 2 7 7 C 1.52999 * 109.47267 * 184.99837 * 5 4 2 8 8 N 1.46501 * 109.46938 * 64.99359 * 5 4 2 9 9 C 1.34782 * 119.99773 * 204.99884 * 8 5 4 10 10 O 1.21608 * 119.99968 * 0.02562 * 9 8 5 11 11 C 1.47389 * 119.99888 * 180.02562 * 9 8 5 12 12 C 1.38876 * 120.01728 * 359.97438 * 11 9 8 13 13 C 1.38239 * 120.46118 * 179.72388 * 12 11 9 14 14 C 1.37963 * 120.27519 * 0.25586 * 13 12 11 15 15 C 1.39189 * 120.44703 * 0.02562 * 14 13 12 16 16 S 1.76143 * 131.63210 * 179.97438 * 15 14 13 17 17 C 1.70689 * 90.71370 * 180.02562 * 16 15 14 18 18 N 1.28160 * 111.37129 * 359.97438 * 17 16 15 19 19 C 1.33642 * 118.02455 * 0.02562 * 18 17 16 20 20 N 1.46506 * 109.46773 * 240.00248 * 2 1 3 21 21 C 1.36935 * 119.99753 * 85.00321 * 20 2 1 22 22 H 1.07997 * 120.00283 * 359.97438 * 21 20 2 23 23 C 1.38813 * 119.99763 * 179.97438 * 21 20 2 24 24 N 1.31621 * 120.00235 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99954 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46824 * 90.00747 * 25 23 21 27 27 H 1.48504 * 109.47383 * 210.00435 * 25 23 21 28 28 H 1.48501 * 109.47478 * 330.00605 * 25 23 21 29 29 H 1.09006 * 109.47362 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47067 * 299.99568 * 1 2 3 31 31 H 1.09005 * 109.47526 * 60.00026 * 1 2 3 32 32 H 1.08994 * 109.47394 * 64.99952 * 4 2 1 33 33 H 1.09007 * 109.46797 * 304.99730 * 4 2 1 34 34 H 1.09002 * 109.46806 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.47060 * 299.99526 * 7 5 4 36 36 H 1.08998 * 109.47216 * 59.99944 * 7 5 4 37 37 H 0.96997 * 120.00640 * 25.00451 * 8 5 4 38 38 H 1.08002 * 119.77320 * 0.02562 * 12 11 9 39 39 H 1.07998 * 119.86664 * 180.28249 * 13 12 11 40 40 H 1.07993 * 119.77289 * 179.97438 * 14 13 12 41 41 H 1.07989 * 124.31460 * 179.97438 * 17 16 15 42 42 H 0.96998 * 120.00122 * 264.99261 * 20 2 1 43 43 H 0.96999 * 120.00290 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9924 0.3867 7 6 4.0851 -1.4385 2.4924 8 7 3.9479 0.7892 1.4924 9 6 5.1612 1.2134 1.0867 10 8 5.9377 0.4318 0.5718 11 6 5.5468 2.6245 1.2670 12 6 4.6601 3.5174 1.8545 13 6 5.0145 4.8416 2.0333 14 6 6.2529 5.2915 1.6244 15 6 7.1585 4.4192 1.0276 16 16 8.7870 4.6689 0.4045 17 6 8.8896 3.0258 -0.0463 18 7 7.8152 2.3926 0.2492 19 6 6.8256 3.0738 0.8344 20 7 2.0182 -0.6906 -1.1963 21 6 2.1490 -0.0074 -2.3758 22 1 1.8919 1.0404 -2.4243 23 6 2.6121 -0.6616 -3.5091 24 7 2.9251 -1.9387 -3.4501 25 14 2.7899 0.2702 -5.1183 26 1 4.1519 0.8561 -5.2032 27 1 2.5800 -0.6614 -6.2556 28 1 1.7792 1.3568 -5.1755 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7516 -1.7716 1.2055 33 1 1.6053 -0.2619 2.1370 34 1 5.1714 -1.3612 2.5385 35 1 3.6546 -1.0596 3.4193 36 1 3.8001 -2.4821 2.3593 37 1 3.3285 1.4127 1.9028 38 1 3.6888 3.1739 2.1783 39 1 4.3192 5.5267 2.4954 40 1 6.5211 6.3277 1.7677 41 1 9.7500 2.5771 -0.5200 42 1 2.2490 -1.6317 -1.1528 43 1 3.2484 -2.3959 -4.2421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134361154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:44 Heat of formation + Delta-G solvation = 35.334793 kcal Electronic energy + Delta-G solvation = -26341.213755 eV Core-core repulsion = 22706.356602 eV Total energy + Delta-G solvation = -3634.857153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.78372 -39.10171 -37.00346 -36.63840 -34.36377 -32.34431 -31.68872 -30.06749 -30.00772 -28.53606 -26.27919 -25.20414 -24.27215 -23.53757 -21.93433 -21.20927 -20.37050 -19.65487 -18.74795 -17.31523 -16.98132 -16.51088 -16.01867 -15.41010 -15.23122 -15.11792 -14.68713 -14.28898 -13.97083 -13.85163 -13.64641 -13.46579 -12.95869 -12.79516 -12.65051 -12.29258 -12.12907 -12.03587 -11.90025 -11.68636 -11.55905 -11.39255 -10.98681 -10.77175 -10.56943 -10.36859 -10.22702 -10.17331 -9.84350 -9.74674 -9.55908 -9.32797 -8.94573 -8.81684 -8.63284 -8.27184 -6.85572 -5.66728 -2.94341 0.09080 0.67698 1.08298 1.53090 2.26029 2.98912 3.41578 3.49887 3.54513 3.56003 3.85494 3.90096 4.39887 4.62588 4.68019 4.77965 4.95292 5.00537 5.16177 5.26674 5.44474 5.50824 5.55507 5.68099 5.74713 5.78472 5.90202 5.94189 5.98531 6.01021 6.06026 6.18285 6.33046 6.34725 6.42050 6.49520 6.61956 6.78223 6.87036 6.99190 7.11915 7.57253 7.78202 7.87026 8.51695 8.64520 9.63101 10.20492 10.54544 11.56115 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.004029 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.559404 B = 6947.612222 C = 8204.774164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.130 4.130 5 C 0.145 3.855 6 H 0.106 0.894 7 C -0.160 4.160 8 N -0.714 5.714 9 C 0.549 3.451 10 O -0.496 6.496 11 C -0.068 4.068 12 C -0.075 4.075 13 C -0.108 4.108 14 C -0.052 4.052 15 C -0.189 4.189 16 S 0.081 5.919 17 C 0.073 3.927 18 N -0.432 5.432 19 C 0.129 3.871 20 N -0.720 5.720 21 C -0.233 4.233 22 H 0.066 0.934 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.901 3.099 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.390 0.610 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.205 0.795 42 H 0.383 0.617 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 14.638 16.421 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.041 3.959 6 H 0.124 0.876 7 C -0.219 4.219 8 N -0.366 5.366 9 C 0.334 3.666 10 O -0.370 6.370 11 C -0.074 4.074 12 C -0.096 4.096 13 C -0.130 4.130 14 C -0.075 4.075 15 C -0.308 4.308 16 S 0.335 5.665 17 C -0.232 4.232 18 N -0.142 5.142 19 C 0.006 3.994 20 N -0.362 5.362 21 C -0.365 4.365 22 H 0.084 0.916 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.732 3.268 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.225 0.775 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.152 0.848 41 H 0.222 0.778 42 H 0.217 0.783 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.701 14.349 15.626 22.569 hybrid contribution -0.907 0.148 -0.666 1.135 sum 6.794 14.497 14.960 21.912 Atomic orbital electron populations 1.22461 0.99568 1.00798 0.99707 1.20220 0.91524 0.95532 0.86589 0.93709 1.22171 0.93728 1.02256 0.98767 1.21030 0.95034 0.79843 0.99944 0.87567 1.22181 1.01580 1.00158 0.97963 1.45884 1.16103 1.11728 1.62921 1.17854 0.82537 0.86842 0.79333 1.90884 1.50466 1.55135 1.40505 1.19776 0.91902 0.94912 1.00842 1.21251 0.98700 0.93144 0.96515 1.21051 0.96009 0.95703 1.00236 1.20449 0.92313 0.98621 0.96117 1.23885 0.99693 0.98276 1.08980 1.83907 1.09529 1.13939 1.59129 1.28454 0.99960 0.93521 1.01238 1.65953 0.99579 1.36768 1.11867 1.18794 0.94031 0.88014 0.98512 1.42386 1.77964 1.10546 1.05257 1.19136 1.36374 0.93611 0.87345 0.91594 1.24674 1.02208 0.95915 0.97896 1.69642 1.50968 1.08570 1.28742 0.86286 0.77765 0.78644 0.84096 1.21835 1.21811 1.20922 0.93530 0.94746 0.92942 0.90568 0.92087 0.92518 0.93195 0.91718 0.77505 0.84248 0.84056 0.84838 0.77812 0.78327 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.49 37.16 0.35 -2.54 16 2 C 0.17 3.28 2.84 -67.93 -0.19 3.09 16 3 H 0.04 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -2.01 4.29 -26.73 -0.11 -2.13 16 5 C 0.15 2.44 2.52 -67.93 -0.17 2.27 16 6 H 0.11 2.36 7.05 -51.93 -0.37 1.99 16 7 C -0.16 -2.30 9.48 37.16 0.35 -1.95 16 8 N -0.71 -10.99 4.40 -54.89 -0.24 -11.23 16 9 C 0.55 10.11 7.72 -12.53 -0.10 10.02 16 10 O -0.50 -11.50 15.44 5.27 0.08 -11.41 16 11 C -0.07 -1.05 5.92 -104.39 -0.62 -1.67 16 12 C -0.07 -0.81 9.50 -39.35 -0.37 -1.18 16 13 C -0.11 -0.94 10.02 -39.68 -0.40 -1.34 16 14 C -0.05 -0.50 10.05 -39.33 -0.40 -0.89 16 15 C -0.19 -2.37 6.55 -38.59 -0.25 -2.62 16 16 S 0.08 0.83 23.18 -107.50 -2.49 -1.67 16 17 C 0.07 0.90 12.12 51.23 0.62 1.52 16 18 N -0.43 -7.41 9.43 -12.74 -0.12 -7.53 16 19 C 0.13 2.08 6.73 -84.89 -0.57 1.51 16 20 N -0.72 -18.02 4.49 -53.43 -0.24 -18.26 16 21 C -0.23 -6.63 9.93 -15.06 -0.15 -6.78 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -29.07 13.06 55.49 0.72 -28.35 16 25 Si 0.90 23.53 29.55 -169.99 -5.02 18.50 16 26 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 27 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 28 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.39 4.61 6.60 -40.82 -0.27 4.34 16 38 H 0.14 1.10 6.34 -52.49 -0.33 0.77 16 39 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.21 1.76 8.06 -52.49 -0.42 1.33 16 42 H 0.38 10.29 7.80 -40.82 -0.32 9.97 16 43 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -37.35 374.32 -9.65 -47.00 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.88 Total: 10.41 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -2.10 Total: -3.11 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: 0.12 Total: -65.37 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.41 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.02 Total: 18.50 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.49 Total: -1.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.35 -9.65 -47.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134361154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.336 kcal (2) G-P(sol) polarization free energy of solvation -37.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds